FvH4_6g23370

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
17388193 .. 17396484
8292 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g23370.t7

Sequence Viewer

Length: 1491 bp
ATGGCTATACATTGTCTCCTAAATTGTTGCAAGAATATGGGCAACATGCCCCTCTTTGTGTTCTTCAAAGACACAAGGAATGTTTTCAGAGCTGATGAGCTAGGCCTGGAAATAGTACATATTGCTCTTCCTACGCTACTAGCGTTAGTAGCAGACCCTGCTGCTTCTCTAATCGACACAGCATTTGTTGGCCATATAGGTCCTGTGGAGCTTGCAGCTGTGGGAGTTTCTATTGCTGTTTTCAATCAAGTATCAAAAATAGCAATATTTCCACTAGTCAGTATTACAACCTCTTTTGTTGCTGAAGAAGATACTACAGAACCATTAAGTACTCAAGATGAACGACTGGAAAATGCTACTTTCGTCAACAAGGAAATGGAAGTACTCAAACCACTTGTTGAAATGGTCAAACCTGAGCATGTCAGAAGGCGTATTCCATCAGCGTCATCAGCGTTGGTCATTGGCAGCATCCTGGGGGTTATTCAAACTCTATTCCTAATTTTTGCTGCAAACCCCATCCTAAATTACATGGGGGTAGATTCTGGTTCTCCTATGTTAAGACCAGCAAGACAATACCTGACACTACGATCACTTGGTGCTCCTGCAGTTCTTCTCTCTTTGGCAATGCAAGGGGTTTTCCGTGGTTTTAAGGATACAAAAACTCCTTTATATGCTACAATTGTGGGAGATGCAGTAAACATCATTTTGGACCCAATATTAATGTTTGCACTCCATATGGGCATTAGTGGTGCAGCGATAGCCCATGTTTTCTCTCAGTATTTAATCTGTCTGATACTGTTATGGAGATTAAACAGACAAGTCGACCTCCTAACCCCAGGCGTCAAAGATCTACGGATTGGCCAGTTTCTGAAAAATGGGGGTATGTTATTGGTGAGAGTTATAGCTGCAACATTCTGTGTCACCCTTGCAGCATCATTAACTGCACGGCAGGGATCGACATCAATGGCAGCATTTCAAGTTTGCTTGCAGATTTGGCTTGCGGCCTCTTTGCTTGCAGATGGGTTAGCTGTGGCTGGACAAGCAATCCTTGCAAGCGCATTTGCGAGGAAGGATCACAGCAAGGTTGTTGCCACAGCTTCACGTATATTGCAGATGGCTTTGGTTCTAGGGATAATACTCGGAGTCATGCTTACAGTTGTATTGAAGTTTGCGTCAAGATTATTCACCAAAGATATCAATGTTTTGCAGCTTATAAGTTTAGGCATTCCGTTTATTGCAGTGACTCAGCCCGTTAATGCTTTGGCTTTTGTCTTTGACGGATTAAATTATGGAGCATCAGATTTTGCATATTCTGCCTACTCAATGGTTGTGGTGGCTTTAGTGAGCATATTGTGCCTGTTTCTATTATCATCAAGCCATGGCTTTGTTGGTATTTGGGTTGCTTTAACAATCTTTATGAGTTTGCGGACAGTGGTTGGATTTTGGAGGATAGGGACTGGAACAGGACCGTGGGGCTTTCTGAGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

497

Amino Acids

53.43

Weight (kDa)

8.81

Isoelectric Point (pI)

32.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 148 - 239 3e-12 MatE
MatE PF01554 300 - 451 2.6e-12 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1214
AccI GTMKAC 1 cut(s) 822
AciI CCGC 2 cut(s) 1001, 1426
AclWI GGATC 2 cut(s) 961, 1080
AcoI YGGCCR 2 cut(s) 190, 859
AcuI CTGAAG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 840
AdeI CACNNNGTG 1 cut(s) 596
AfaI GTAC 3 cut(s) 117, 331, 384
AgsI TTSAA 6 cut(s) 67, 244, 401, 485, 977, 1165
AhlI ACTAGT 1 cut(s) 274
AjnI CCWGG 3 cut(s) 105, 471, 835
AluBI AGCT 8 cut(s) 92, 100, 211, 218, 905, 1028, 1097, 1210
AluI AGCT 8 cut(s) 92, 100, 211, 218, 905, 1028, 1097, 1210
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 2 cut(s) 961, 1080
AlwNI CAGNNNCTG 2 cut(s) 158, 868
AoxI GGCC 4 cut(s) 103, 190, 859, 1002
ApeKI GCWGC 9 cut(s) 161, 215, 465, 506, 752, 905, 929, 968, 1207
ArsI GACNNNNNNTTYG 2 cut(s) 167, 199
AseI ATTAAT 1 cut(s) 719
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 1058
AspS9I GGNCC 3 cut(s) 200, 709, 1466
AsuHPI GGTGA 3 cut(s) 904, 913, 1177
AvaII GGWCC 3 cut(s) 200, 709, 1466
BalI TGGCCA 2 cut(s) 192, 861
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 9 cut(s) 148, 227, 477, 493, 764, 892, 941, 980, 1219
BccI CCATC 4 cut(s) 445, 524, 1013, 1108
BceAI ACGGC 1 cut(s) 962
BciT130I CCWGG 3 cut(s) 107, 473, 837
BciVI GTATCC 1 cut(s) 646
BcoDI GTCTC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 274
BfaI CTAG 4 cut(s) 101, 140, 275, 1127
BfmI CTRYAG 2 cut(s) 315, 603
BfuI GTATCC 1 cut(s) 646
BglII AGATCT 1 cut(s) 847
BmcAI AGTACT 2 cut(s) 331, 384
Bme1390I CCNGG 3 cut(s) 107, 473, 837
Bme18I GGWCC 3 cut(s) 200, 709, 1466
BmgT120I GGNCC 3 cut(s) 200, 709, 1466
BmiI GGNNCC 1 cut(s) 711
BmrFI CCNGG 3 cut(s) 107, 473, 837
BmsI GCATC 4 cut(s) 477, 679, 941, 1304
Bpu10I CCTNAGC 1 cut(s) 414
BpuEI CTTGAG 1 cut(s) 318
BsaAI YACGTR 1 cut(s) 1103
BsaBI GATNNNNATC 1 cut(s) 958
BsaHI GRCGYC 1 cut(s) 840
BsaJI CCNNGG 5 cut(s) 472, 640, 835, 1378, 1469
BsaXI ACNNNNNCTCC 5 cut(s) 30, 646, 676, 678, 708
Bse1I ACTGG 3 cut(s) 351, 862, 1462
Bse3DI GCAATG 1 cut(s) 630
Bse8I GATNNNNATC 1 cut(s) 958
BseBI CCWGG 3 cut(s) 107, 473, 837
BseDI CCNNGG 5 cut(s) 472, 640, 835, 1378, 1469
BseGI GGATG 2 cut(s) 468, 516
BseJI GATNNNNATC 1 cut(s) 958
BseMI GCAATG 1 cut(s) 630
BseMII CTCAG 4 cut(s) 405, 788, 1259, 1472
BseNI ACTGG 3 cut(s) 351, 862, 1462
BseXI GCAGC 9 cut(s) 148, 227, 477, 493, 764, 892, 941, 980, 1219
BsgI GTGCAG 2 cut(s) 771, 927
BshFI GGCC 4 cut(s) 105, 192, 861, 1004
BsiHKAI GWGCWC 1 cut(s) 601
BslFI GGGAC 1 cut(s) 1468
BsmAI GTCTC 1 cut(s) 20
BsmFI GGGAC 1 cut(s) 1468
BsmI GAATGC 1 cut(s) 1224
BsnI GGCC 4 cut(s) 105, 192, 861, 1004
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 4 cut(s) 587, 847, 953, 1072
Bsp19I CCATGG 1 cut(s) 1378
BspACI CCGC 2 cut(s) 1001, 1426
BspANI GGCC 4 cut(s) 105, 192, 861, 1004
BspCNI CTCAG 4 cut(s) 406, 787, 1258, 1473
BspLI GGNNCC 1 cut(s) 711
BspMAI CTGCAG 1 cut(s) 607
BspPI GGATC 2 cut(s) 961, 1080
BspQI GCTCTTC 1 cut(s) 132
BsrDI GCAATG 1 cut(s) 630
BsrI ACTGG 3 cut(s) 351, 862, 1462
BssECI CCNNGG 5 cut(s) 472, 640, 835, 1378, 1469
BssMI GATC 4 cut(s) 587, 847, 953, 1072
BssNI GRCGYC 1 cut(s) 840
BssT1I CCWWGG 1 cut(s) 1378
Bst2UI CCWGG 3 cut(s) 107, 473, 837
Bst4CI ACNGT 4 cut(s) 798, 1156, 1432, 1470
Bst6I CTCTTC 1 cut(s) 132
BstACI GRCGYC 1 cut(s) 840
BstAPI GCANNNNNTGC 4 cut(s) 158, 1049, 1313, 1353
BstBAI YACGTR 1 cut(s) 1103
BstC8I GCNNGC 5 cut(s) 213, 986, 999, 1014, 1054
BstDEI CTNAG 4 cut(s) 414, 774, 1245, 1481
BstDSI CCRYGG 3 cut(s) 640, 1378, 1469
BstF5I GGATG 2 cut(s) 468, 516
BstHHI GCGC 1 cut(s) 1058
BstKTI GATC 4 cut(s) 590, 850, 956, 1075
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 4 cut(s) 587, 847, 953, 1072
BstMWI GCNNNNNNNGC 9 cut(s) 149, 158, 449, 758, 994, 1040, 1049, 1313, 1353
BstNI CCWGG 3 cut(s) 107, 473, 837
BstNSI RCATGY 2 cut(s) 49, 422
BstSCI CCNGG 3 cut(s) 105, 471, 835
BstSFI CTRYAG 2 cut(s) 315, 603
BstV1I GCAGC 9 cut(s) 148, 227, 477, 493, 764, 892, 941, 980, 1219
BstX2I RGATCY 1 cut(s) 847
BstYI RGATCY 1 cut(s) 847
BsuI GTATCC 1 cut(s) 646
BsuRI GGCC 4 cut(s) 105, 192, 861, 1004
BtgI CCRYGG 3 cut(s) 640, 1378, 1469
BtsCI GGATG 2 cut(s) 468, 516
BtsI GCAGTG 1 cut(s) 1245
BtsIMutI CAGTG 2 cut(s) 1245, 1437
Cac8I GCNNGC 5 cut(s) 213, 986, 999, 1014, 1054
CaiI CAGNNNCTG 2 cut(s) 158, 868
CfoI GCGC 1 cut(s) 1058
Cfr13I GGNCC 3 cut(s) 200, 709, 1466
CseI GACGC 3 cut(s) 432, 829, 1161
Csp6I GTAC 3 cut(s) 116, 330, 383
CspCI CAANNNNNGTGG 2 cut(s) 1311, 1346
CviAII CATG 6 cut(s) 46, 419, 529, 764, 1147, 1379
CviQI GTAC 3 cut(s) 116, 330, 383
DdeI CTNAG 4 cut(s) 414, 774, 1245, 1481
DpnI GATC 4 cut(s) 589, 849, 955, 1074
DpnII GATC 4 cut(s) 587, 847, 953, 1072
DraIII CACNNNGTG 1 cut(s) 596
EaeI YGGCCR 2 cut(s) 190, 859
Eam1104I CTCTTC 1 cut(s) 132
EarI CTCTTC 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 1378
Eco147I AGGCCT 1 cut(s) 105
Eco32I GATATC 1 cut(s) 1195
Eco47I GGWCC 3 cut(s) 200, 709, 1466
Eco57I CTGAAG 1 cut(s) 324
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 3 cut(s) 105, 471, 835
EcoRV GATATC 1 cut(s) 1195
EcoT14I CCWWGG 1 cut(s) 1378
ErhI CCWWGG 1 cut(s) 1378
FaeI CATG 6 cut(s) 49, 422, 532, 767, 1150, 1382
FalI AAGNNNNNCTT 2 cut(s) 1032, 1064
FaqI GGGAC 1 cut(s) 1468
FatI CATG 6 cut(s) 45, 418, 528, 763, 1146, 1378
FauNDI CATATG 1 cut(s) 735
FblI GTMKAC 1 cut(s) 822
FokI GGATG 2 cut(s) 455, 503
FspBI CTAG 4 cut(s) 101, 140, 275, 1127
GlaI GCGC 1 cut(s) 1057
HaeIII GGCC 4 cut(s) 105, 192, 861, 1004
HgaI GACGC 3 cut(s) 432, 829, 1161
HhaI GCGC 1 cut(s) 1058
Hin1I GRCGYC 1 cut(s) 840
Hin1II CATG 6 cut(s) 49, 422, 532, 767, 1150, 1382
Hin6I GCGC 1 cut(s) 1056
HinP1I GCGC 1 cut(s) 1056
HincII GTYRAC 2 cut(s) 367, 823
HindII GTYRAC 2 cut(s) 367, 823
HinfI GANTC 3 cut(s) 539, 1143, 1243
HphI GGTGA 3 cut(s) 904, 913, 1177
Hpy166II GTNNAC 3 cut(s) 367, 697, 823
Hpy188I TCNGA 7 cut(s) 89, 425, 792, 870, 1142, 1300, 1482
Hpy188III TCNNGA 2 cut(s) 335, 1176
Hpy8I GTNNAC 3 cut(s) 367, 697, 823
HpyAV CCTTC 2 cut(s) 420, 1063
HpyCH4III ACNGT 4 cut(s) 798, 1156, 1432, 1470
HpyCH4IV ACGT 1 cut(s) 1102
HpyF10VI GCNNNNNNNGC 9 cut(s) 149, 158, 449, 758, 994, 1040, 1049, 1313, 1353
HpyF3I CTNAG 4 cut(s) 414, 774, 1245, 1481
HpySE526I ACGT 1 cut(s) 1102
Hsp92I GRCGYC 1 cut(s) 840
Hsp92II CATG 6 cut(s) 49, 422, 532, 767, 1150, 1382
HspAI GCGC 1 cut(s) 1056
Kzo9I GATC 4 cut(s) 587, 847, 953, 1072
LguI GCTCTTC 1 cut(s) 132
LmnI GCTCC 3 cut(s) 208, 604, 1292
Lsp1109I GCAGC 9 cut(s) 148, 227, 477, 493, 764, 892, 941, 980, 1219
LweI GCATC 4 cut(s) 477, 679, 941, 1304
MaeI CTAG 4 cut(s) 101, 140, 275, 1127
MaeII ACGT 1 cut(s) 1102
MaeIII GTNAC 2 cut(s) 919, 1240
MalI GATC 4 cut(s) 589, 849, 955, 1074
MboI GATC 4 cut(s) 587, 847, 953, 1072
MboII GAAGA 5 cut(s) 55, 119, 317, 320, 602
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 1 cut(s) 847
MhlI GDGCHC 1 cut(s) 601
MlsI TGGCCA 2 cut(s) 192, 861
MluCI AATT 5 cut(s) 22, 498, 523, 678, 1285
MluNI TGGCCA 2 cut(s) 192, 861
MlyI GAGTC 2 cut(s) 1152, 1237
MmeI TCCRAC 1 cut(s) 1417
MnlI CCTC 7 cut(s) 62, 301, 836, 1015, 1059, 1440, 1476
Mox20I TGGCCA 2 cut(s) 192, 861
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 2 cut(s) 192, 861
Msp20I TGGCCA 2 cut(s) 192, 861
MspA1I CMGCKG 1 cut(s) 218
MspR9I CCNGG 3 cut(s) 107, 473, 837
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 1224
MvaI CCWGG 3 cut(s) 107, 473, 837
MwoI GCNNNNNNNGC 9 cut(s) 149, 158, 449, 758, 994, 1040, 1049, 1313, 1353
NcoI CCATGG 1 cut(s) 1378
NdeI CATATG 1 cut(s) 735
NdeII GATC 4 cut(s) 587, 847, 953, 1072
NlaIII CATG 6 cut(s) 49, 422, 532, 767, 1150, 1382
NlaIV GGNNCC 1 cut(s) 711
NmuCI GTSAC 2 cut(s) 919, 1240
NspI RCATGY 2 cut(s) 49, 422
PceI AGGCCT 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 132
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 1224
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 539
PleI GAGTC 2 cut(s) 1151, 1237
PpsI GAGTC 2 cut(s) 1151, 1237
Ppu21I YACGTR 1 cut(s) 1103
PpuMI RGGWCCY 1 cut(s) 200
PshBI ATTAAT 1 cut(s) 719
PsiI TTATAA 1 cut(s) 1214
Psp5II RGGWCCY 1 cut(s) 200
Psp6I CCWGG 3 cut(s) 105, 471, 835
PspGI CCWGG 3 cut(s) 105, 471, 835
PspN4I GGNNCC 1 cut(s) 711
PspPI GGNCC 3 cut(s) 200, 709, 1466
PspPPI RGGWCCY 1 cut(s) 200
PstI CTGCAG 1 cut(s) 607
PstNI CAGNNNCTG 2 cut(s) 158, 868
PsuI RGATCY 1 cut(s) 847
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 3 cut(s) 117, 331, 384
RsaNI GTAC 3 cut(s) 116, 330, 383
SalI GTCGAC 1 cut(s) 821
SapI GCTCTTC 1 cut(s) 132
Sau3AI GATC 4 cut(s) 587, 847, 953, 1072
Sau96I GGNCC 3 cut(s) 200, 709, 1466
ScaI AGTACT 2 cut(s) 331, 384
SchI GAGTC 2 cut(s) 1152, 1237
ScrFI CCNGG 3 cut(s) 107, 473, 837
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 4 cut(s) 477, 679, 941, 1304
SfcI CTRYAG 2 cut(s) 315, 603
SinI GGWCC 3 cut(s) 200, 709, 1466
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
SpeI ACTAGT 1 cut(s) 274
Sse9I AATT 5 cut(s) 22, 498, 523, 678, 1285
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 2 cut(s) 1001, 1426
SspI AATATT 2 cut(s) 267, 717
SspMI CTAG 4 cut(s) 101, 140, 275, 1127
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 105, 471, 835
StyI CCWWGG 1 cut(s) 1378
TaaI ACNGT 4 cut(s) 798, 1156, 1432, 1470
TaiI ACGT 1 cut(s) 1105
TaqI TCGA 3 cut(s) 174, 822, 956
TasI AATT 5 cut(s) 22, 498, 523, 678, 1285
TatI WGTACW 3 cut(s) 115, 329, 382
TauI GCSGC 1 cut(s) 1004
TfiI GAWTC 1 cut(s) 539
TscAI CASTG 2 cut(s) 1245, 1437
TseFI GTSAC 2 cut(s) 919, 1240
TseI GCWGC 9 cut(s) 161, 215, 465, 506, 752, 905, 929, 968, 1207
Tsp45I GTSAC 2 cut(s) 919, 1240
TspDTI ATGAA 1 cut(s) 354
TspGWI ACGGA 4 cut(s) 629, 868, 1218, 1293
TspRI CASTG 2 cut(s) 1245, 1437
VpaK11BI GGWCC 3 cut(s) 200, 709, 1466
VspI ATTAAT 1 cut(s) 719
XceI RCATGY 2 cut(s) 49, 422
XcmI CCANNNNNNNNNTGG 1 cut(s) 1385
XmiI GTMKAC 1 cut(s) 822
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 4 cut(s) 101, 140, 275, 1127
ZrmI AGTACT 2 cut(s) 331, 384
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.