Rorug03G0191400

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001107
Physical Location & Seq
Reverse (-)
16818154 .. 16818899
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0191400.1

Sequence Viewer

Length: 552 bp
ATGTTCAAGGTACAGGACTACTATGTAGTCGAGAAACCTCTCTTGCGAGAGTTGAGTTTGCAGTACCACCACCAGTCAATAGTGATAACGTCCCTAAGGGCAATCTCGAGAGAGAAAAGGTTACATTGTTTGACCGGTACAGAAGATTGGAAGGTGGGTGACCTCATTGATCCGGTACAAAAAGAATGGATTCAGCCTGTTATTGAAGACCTATTTACGAAGACGGAAAAAGATATAATCCTAGGTATCCCTCTGAGTCTGAGACTGGCTGGGGATAGAATGGTCTGGCACTATGACAAGAAGGGTGTGTTTAATGTTAAGAGTGGGTACTATGTAGCTCGTACGCTGGAGACACATACAAGTTCTGCTTCGTCTTCAGCCGAAGCGGGGAGTGAGGCCAATAGAGTATGGAGGGTTGTGTGGGGAGCACGGATTCCGCCCAAAATGAAGACGTTTATATGGAGACTGTTGAGAGGTATTTTGCCTACAAAGGATGCTTTGCGTAAGAGGACCAAGTTCGCAGCCTGGAACATGGGTACAGCTTTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

183

Amino Acids

21.14

Weight (kDa)

9.71

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 121 - 171 4.1e-08 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 386, 437
AclWI GGATC 1 cut(s) 164
AcuI CTGAAG 1 cut(s) 360
AfaI GTAC 7 cut(s) 12, 65, 139, 177, 329, 343, 538
AfiI CCNNNNNNNGG 1 cut(s) 387
AgeI ACCGGT 1 cut(s) 134
AgsI TTSAA 2 cut(s) 7, 206
AjnI CCWGG 1 cut(s) 524
AluBI AGCT 2 cut(s) 338, 542
AluI AGCT 2 cut(s) 338, 542
Alw21I GWGCWC 1 cut(s) 430
Alw26I GTCTC 3 cut(s) 256, 344, 457
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 106
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 1 cut(s) 521
AsiGI ACCGGT 1 cut(s) 134
Asp700I GAANNNNTTC 1 cut(s) 189
AspA2I CCTAGG 1 cut(s) 241
AspS9I GGNCC 1 cut(s) 510
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 106
AvaII GGWCC 1 cut(s) 510
AvrII CCTAGG 1 cut(s) 241
AxyI CCTNAGG 1 cut(s) 95
BbsI GAAGAC 4 cut(s) 213, 227, 366, 455
Bbv12I GWGCWC 1 cut(s) 430
BbvI GCAGC 1 cut(s) 533
BciT130I CCWGG 1 cut(s) 526
BciVI GTATCC 1 cut(s) 257
BcoDI GTCTC 3 cut(s) 256, 344, 457
BfaI CTAG 1 cut(s) 242
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 1 cut(s) 522
BlnI CCTAGG 1 cut(s) 241
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 1 cut(s) 526
Bme18I GGWCC 1 cut(s) 510
BmeT110I CYCGRG 1 cut(s) 106
BmgT120I GGNCC 1 cut(s) 510
BmrFI CCNGG 1 cut(s) 526
BmsI GCATC 1 cut(s) 484
BpiI GAAGAC 4 cut(s) 213, 227, 366, 455
BpmI CTGGAG 1 cut(s) 368
BsaJI CCNNGG 1 cut(s) 241
BsaWI WCCGGW 2 cut(s) 134, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 387
Bse118I RCCGGY 1 cut(s) 134
Bse1I ACTGG 2 cut(s) 73, 270
Bse21I CCTNAGG 1 cut(s) 95
BseBI CCWGG 1 cut(s) 526
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 499
BseLI CCNNNNNNNGG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 245, 251
BseNI ACTGG 2 cut(s) 73, 270
BseXI GCAGC 1 cut(s) 533
BseYI CCCAGC 1 cut(s) 269
BshFI GGCC 1 cut(s) 398
BshTI ACCGGT 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 430
BsiHKCI CYCGRG 1 cut(s) 106
BsiSI CCGG 2 cut(s) 135, 173
BsiWI CGTACG 1 cut(s) 341
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 1 cut(s) 387
BsmAI GTCTC 3 cut(s) 256, 344, 457
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 106
Bsp1286I GDGCHC 1 cut(s) 430
Bsp143I GATC 1 cut(s) 169
BspACI CCGC 2 cut(s) 386, 437
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 2 cut(s) 246, 252
BspPI GGATC 1 cut(s) 164
BsrFI RCCGGY 1 cut(s) 134
BsrI ACTGG 2 cut(s) 73, 270
BssAI RCCGGY 1 cut(s) 134
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 169
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 468
BstDEI CTNAG 3 cut(s) 95, 254, 260
BstEII GGTNACC 1 cut(s) 158
BstF5I GGATG 1 cut(s) 499
BstKTI GATC 1 cut(s) 172
BstMAI GTCTC 3 cut(s) 256, 344, 457
BstMBI GATC 1 cut(s) 169
BstNI CCWGG 1 cut(s) 526
BstPI GGTNACC 1 cut(s) 158
BstSCI CCNGG 1 cut(s) 524
BstV1I GCAGC 1 cut(s) 533
BstV2I GAAGAC 4 cut(s) 213, 227, 366, 455
Bsu36I CCTNAGG 1 cut(s) 95
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 1 cut(s) 499
Cfr10I RCCGGY 1 cut(s) 134
Cfr13I GGNCC 1 cut(s) 510
Csp6I GTAC 7 cut(s) 11, 64, 138, 176, 328, 342, 537
CspAI ACCGGT 1 cut(s) 134
CviAII CATG 1 cut(s) 532
CviJI RGCY 7 cut(s) 196, 269, 338, 380, 398, 524, 542
CviKI_1 RGCY 7 cut(s) 196, 269, 338, 380, 398, 524, 542
CviQI GTAC 7 cut(s) 11, 64, 138, 176, 328, 342, 537
DdeI CTNAG 3 cut(s) 95, 254, 260
DpnI GATC 1 cut(s) 171
DpnII GATC 1 cut(s) 169
EciI GGCGGA 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 241
Eco47I GGWCC 1 cut(s) 510
Eco57I CTGAAG 1 cut(s) 360
Eco81I CCTNAGG 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 106
Eco91I GGTNACC 1 cut(s) 158
EcoO65I GGTNACC 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 524
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 1 cut(s) 535
FaiI YATR 9 cut(s) 24, 236, 294, 333, 357, 409, 458, 460, 533
FalI AAGNNNNNCTT 2 cut(s) 352, 384
FaqI GGGAC 1 cut(s) 76
FatI CATG 1 cut(s) 531
FauI CCCGC 1 cut(s) 379
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 1 cut(s) 506
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 522
GsaI CCCAGC 1 cut(s) 273
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 1 cut(s) 398
HapII CCGG 2 cut(s) 135, 173
Hin1II CATG 1 cut(s) 535
HinfI GANTC 3 cut(s) 190, 256, 433
HpaII CCGG 2 cut(s) 135, 173
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 2 cut(s) 255, 261
Hpy188III TCNNGA 3 cut(s) 31, 106, 108
HpyAV CCTTC 2 cut(s) 145, 295
HpyCH4III ACNGT 1 cut(s) 468
HpyCH4IV ACGT 2 cut(s) 89, 452
HpyCH4V TGCA 1 cut(s) 61
HpyF3I CTNAG 3 cut(s) 95, 254, 260
HpySE526I ACGT 2 cut(s) 89, 452
Hsp92II CATG 1 cut(s) 535
Kzo9I GATC 1 cut(s) 169
LmnI GCTCC 1 cut(s) 425
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 1 cut(s) 484
MaeI CTAG 1 cut(s) 242
MaeII ACGT 2 cut(s) 89, 452
MaeIII GTNAC 2 cut(s) 120, 158
MalI GATC 1 cut(s) 171
MboI GATC 1 cut(s) 169
MboII GAAGA 5 cut(s) 155, 218, 232, 366, 460
MhlI GDGCHC 1 cut(s) 430
MlyI GAGTC 1 cut(s) 265
MnlI CCTC 7 cut(s) 48, 173, 261, 388, 405, 467, 501
MroXI GAANNNNTTC 1 cut(s) 189
MseI TTAA 2 cut(s) 312, 318
MspI CCGG 2 cut(s) 135, 173
MspR9I CCNGG 1 cut(s) 526
MvaI CCWGG 1 cut(s) 526
NdeII GATC 1 cut(s) 169
NlaIII CATG 1 cut(s) 535
NmuCI GTSAC 1 cut(s) 158
PaeR7I CTCGAG 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 189
PfeI GAWTC 2 cut(s) 190, 433
Pfl23II CGTACG 1 cut(s) 341
PinAI ACCGGT 1 cut(s) 134
PkrI GCNGC 1 cut(s) 523
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
Psp6I CCWGG 1 cut(s) 524
PspEI GGTNACC 1 cut(s) 158
PspFI CCCAGC 1 cut(s) 269
PspGI CCWGG 1 cut(s) 524
PspLI CGTACG 1 cut(s) 341
PspPI GGNCC 1 cut(s) 510
RsaI GTAC 7 cut(s) 12, 65, 139, 177, 329, 343, 538
RsaNI GTAC 7 cut(s) 11, 64, 138, 176, 328, 342, 537
SaqAI TTAA 2 cut(s) 312, 318
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 1 cut(s) 169
Sau96I GGNCC 1 cut(s) 510
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 526
SduI GDGCHC 1 cut(s) 430
SfaNI GCATC 1 cut(s) 484
Sfr274I CTCGAG 1 cut(s) 106
SinI GGWCC 1 cut(s) 510
SlaI CTCGAG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
SsiI CCGC 2 cut(s) 386, 437
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 524
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 468
TaiI ACGT 2 cut(s) 92, 455
TaqI TCGA 2 cut(s) 30, 107
TfiI GAWTC 2 cut(s) 190, 433
Tru1I TTAA 2 cut(s) 312, 318
Tru9I TTAA 2 cut(s) 312, 318
TseFI GTSAC 1 cut(s) 158
TseI GCWGC 1 cut(s) 521
Tsp45I GTSAC 1 cut(s) 158
TspDTI ATGAA 1 cut(s) 461
TspGWI ACGGA 2 cut(s) 239, 445
VpaK11BI GGWCC 1 cut(s) 510
XhoI CTCGAG 1 cut(s) 106
XmaJI CCTAGG 1 cut(s) 241
XmnI GAANNNNTTC 1 cut(s) 189
XspI CTAG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.