Prupe.7G066100_v2.0.a1

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001107
Physical Location & Seq
Reverse (-)
10448921 .. 10455714
6794 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G066100.2

Sequence Viewer

Length: 1485 bp
ATGGGCAATATGCCCCTCTTTGTTTTCTTCAAGGACATAAGAAATGTTTTCAAAGCAGATGAGCTAGGCCTGGAAATAGTGCATATAGCCCTTCCTACACTGTTGGCGTTATTGGCAGACCCTGTTGCTTCTCTAGTTGACACAGCATTCGTTGGCCATATAGGTCCAGTGGAGCTCGCGGCTGTTGGAATTTCTATTGCTGTTTTCAATCAAGTATCTAAGATAGCAATTTTTCCGCTTGTCAGTATTACAACCTCTTTTGTTGCTGAAGAAGATGCTACTGAAGAACTGAGGGCAAATGAACAAGTTCATGAAAACGTTGAAAATGGTACTCCCATTAGCATGGAAATGGAGATGGAAGAACTCGTACCACTAGTTGGCAAGTCATCATCTACGGAAATGGTCAAACTTGAGTGTGTCCGAAGGCATATTCCATCTGCGTCATCAGCATTGGTGGTTGGCAGCATACTTGGGTTTATTCAAGCTGTATTCCTAATTTTTGCTGCAAACCCTGTCCTGAATTACATGGGTGTTGATTCTAATTCTCCTATGCTAAAACCAGCAAGACAATACTTGACATTGAGGTCACTTGGTGCTCCAGCTGTTCTTCTCTCTTTGGCTGTGCAAGGGGTTTTTCGTGGTTTTAAAGATACAAAAACTCCTCTATATGCTACAATTGTGGGAGATGTAGCAAACATCATTTTGGACCCAATATTAATGTTCGTATTCCATATGGGTGTTAGAGGTGCGGCCATTGCCCATGTTGTTTCTCAGTACTTAATCTCCCTGATATTGTTGTGGAAATTAAACAAGCAAGTTGATCTCCTAACCTCAGGTGTCAAAGATCTACGATTCGGCCAGTTTCTGAAAAATGGGTTTTTGTTATTGGTGAGGGTGATAGCTGCAACATTCTGTGTTACTCTGGCAGCAGCATTAGCTGCAAGGCAGGGACCGACGACAATGGCTGCATTCCAAGTTTGCTTGCAGATCTGGTTGGCAGCCTCTTTGCTTGCTGACGGGTTGGCTGTGGCTGGACAAGCAATCCTTGCAAGCGCCTTTGCAAGGAAAGATCACAGCAAGGCCGTCGCCACAGCTTCACGTGTATTGCAGTTGGCTTTGGTTCTAGGGCTAATGCTCTCGATCATTCTCATGGTTGTATTACAGTTTGGCTCCAGAATATTTACAAAAGACATCAACGTTTTGCAGCTTATAAGTTTAGGCATCCCGTTTGTTGCAGTGACTCAACCTATTAACGCTTTAGCATTTGTTTTTGATGGAGTCAATTATGGAGCGTCAGATTTTGCATATTCTGCATACTCAATGGTTTTGGTGGCTTTAGTGAGCATATTGTGCCTATTTCTATTATCAAGCCACGGCTTTGTTGGTATCTGGGTTGCTTTATCTGTCTTTATGAGTTTGCGCGCACTGGTTGGATTTTGGAGGATAGGAACGGGAATGGGACCGTGGAGCTTTCTTAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

495

Amino Acids

53.13

Weight (kDa)

6.72

Isoelectric Point (pI)

32.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1211
AasI GACNNNNNNGTC 1 cut(s) 583
AccB7I CCANNNNNTGG 1 cut(s) 377
AccII CGCG 2 cut(s) 179, 1422
AciI CCGC 3 cut(s) 179, 236, 749
AclI AACGTT 2 cut(s) 318, 1197
AcoI YGGCCR 3 cut(s) 154, 750, 856
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 2 cut(s) 288, 303
AcvI CACGTG 1 cut(s) 1100
AdeI CACNNNGTG 1 cut(s) 593
AfaI GTAC 3 cut(s) 331, 369, 776
AfiI CCNNNNNNNGG 2 cut(s) 377, 1062
AflIII ACRYGT 1 cut(s) 1099
AgsI TTSAA 5 cut(s) 31, 52, 208, 323, 482
AhlI ACTAGT 1 cut(s) 373
AjnI CCWGG 1 cut(s) 69
AluBI AGCT 9 cut(s) 64, 175, 485, 602, 902, 938, 1094, 1207, 1470
AluI AGCT 9 cut(s) 64, 175, 485, 602, 902, 938, 1094, 1207, 1470
Alw21I GWGCWC 2 cut(s) 177, 598
AlwNI CAGNNNCTG 2 cut(s) 122, 865
AoxI GGCC 5 cut(s) 67, 154, 750, 856, 1080
ApeKI GCWGC 9 cut(s) 462, 503, 902, 926, 929, 938, 965, 998, 1204
ApoI RAATTY 1 cut(s) 189
ArsI GACNNNNNNTTYG 2 cut(s) 131, 163
AseI ATTAAT 1 cut(s) 716
Asp700I GAANNNNTTC 1 cut(s) 306
AspLEI GCGC 3 cut(s) 1055, 1422, 1424
AspS9I GGNCC 4 cut(s) 164, 706, 950, 1460
AsuHPI GGTGA 2 cut(s) 901, 907
AvaII GGWCC 4 cut(s) 164, 706, 950, 1460
AxyI CCTNAGG 1 cut(s) 832
BalI TGGCCA 1 cut(s) 156
BanII GRGCYC 1 cut(s) 177
BarI GAAGNNNNNNTAC 2 cut(s) 351, 383
BbrPI CACGTG 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 177, 598
BbvI GCAGC 9 cut(s) 474, 490, 889, 925, 938, 941, 952, 1010, 1216
BccI CCATC 3 cut(s) 349, 442, 1268
BceAI ACGGC 2 cut(s) 1067, 1390
BcgI CGANNNNNNTGC 2 cut(s) 1066, 1100
BciT130I CCWGG 1 cut(s) 71
BcuI ACTAGT 1 cut(s) 373
BfaI CTAG 4 cut(s) 65, 134, 374, 1124
BfoI RGCGCY 1 cut(s) 1056
BglII AGATCT 2 cut(s) 844, 987
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 1 cut(s) 71
Bme18I GGWCC 4 cut(s) 164, 706, 950, 1460
BmgT120I GGNCC 4 cut(s) 164, 706, 950, 1460
BmiI GGNNCC 4 cut(s) 708, 951, 1171, 1461
BmrFI CCNGG 1 cut(s) 71
BmsI GCATC 2 cut(s) 265, 1230
BpmI CTGGAG 2 cut(s) 582, 1156
BpuEI CTTGAG 1 cut(s) 431
BsaAI YACGTR 1 cut(s) 1100
BsaJI CCNNGG 2 cut(s) 1372, 1463
BsaXI ACNNNNNCTCC 4 cut(s) 643, 673, 767, 797
Bsc4I CCNNNNNNNGG 2 cut(s) 377, 1062
Bse1I ACTGG 3 cut(s) 167, 859, 1431
Bse21I CCTNAGG 1 cut(s) 832
Bse3DI GCAATG 1 cut(s) 753
BseBI CCWGG 1 cut(s) 71
BseDI CCNNGG 2 cut(s) 1372, 1463
BseGI GGATG 1 cut(s) 1221
BseLI CCNNNNNNNGG 2 cut(s) 377, 1062
BseMI GCAATG 1 cut(s) 753
BseMII CTCAG 3 cut(s) 281, 785, 846
BseNI ACTGG 3 cut(s) 167, 859, 1431
BsePI GCGCGC 1 cut(s) 1420
BseRI GAGGAG 1 cut(s) 651
BseXI GCAGC 9 cut(s) 474, 490, 889, 925, 938, 941, 952, 1010, 1216
Bsh1236I CGCG 2 cut(s) 179, 1422
BshFI GGCC 5 cut(s) 69, 156, 752, 858, 1082
BsiHKAI GWGCWC 2 cut(s) 177, 598
BslFI GGGAC 2 cut(s) 963, 1473
BslI CCNNNNNNNGG 2 cut(s) 377, 1062
BsmFI GGGAC 2 cut(s) 963, 1473
BsmI GAATGC 2 cut(s) 146, 968
BsnI GGCC 5 cut(s) 69, 156, 752, 858, 1082
Bsp1286I GDGCHC 2 cut(s) 177, 598
Bsp143I GATC 5 cut(s) 820, 844, 987, 1069, 1140
BspACI CCGC 3 cut(s) 179, 236, 749
BspANI GGCC 5 cut(s) 69, 156, 752, 858, 1082
BspCNI CTCAG 3 cut(s) 282, 784, 845
BspFNI CGCG 2 cut(s) 179, 1422
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 4 cut(s) 708, 951, 1171, 1461
BsrDI GCAATG 1 cut(s) 753
BsrI ACTGG 3 cut(s) 167, 859, 1431
BssECI CCNNGG 2 cut(s) 1372, 1463
BssHII GCGCGC 1 cut(s) 1420
BssMI GATC 5 cut(s) 820, 844, 987, 1069, 1140
Bst2UI CCWGG 1 cut(s) 71
Bst4CI ACNGT 3 cut(s) 102, 1164, 1464
BstAPI GCANNNNNTGC 4 cut(s) 938, 1046, 1310, 1350
BstBAI YACGTR 1 cut(s) 1100
BstC8I GCNNGC 5 cut(s) 177, 983, 1011, 1051, 1422
BstDEI CTNAG 5 cut(s) 219, 290, 771, 832, 1475
BstDSI CCRYGG 2 cut(s) 1372, 1463
BstENI CCTNNNNNAGG 1 cut(s) 1060
BstF5I GGATG 1 cut(s) 1221
BstFNI CGCG 2 cut(s) 179, 1422
BstH2I RGCGCY 1 cut(s) 1056
BstHHI GCGC 3 cut(s) 1055, 1422, 1424
BstKTI GATC 5 cut(s) 823, 847, 990, 1072, 1143
BstMBI GATC 5 cut(s) 820, 844, 987, 1069, 1140
BstMWI GCNNNNNNNGC 9 cut(s) 113, 446, 755, 935, 938, 1037, 1046, 1310, 1350
BstNI CCWGG 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 69
BstUI CGCG 2 cut(s) 179, 1422
BstV1I GCAGC 9 cut(s) 474, 490, 889, 925, 938, 941, 952, 1010, 1216
BstX2I RGATCY 2 cut(s) 844, 987
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 2 cut(s) 844, 987
Bsu36I CCTNAGG 1 cut(s) 832
BsuRI GGCC 5 cut(s) 69, 156, 752, 858, 1082
BtgI CCRYGG 2 cut(s) 1372, 1463
BtsCI GGATG 1 cut(s) 1221
BtsI GCAGTG 1 cut(s) 1242
BtsIMutI CAGTG 4 cut(s) 98, 174, 1242, 1424
Cac8I GCNNGC 5 cut(s) 177, 983, 1011, 1051, 1422
CaiI CAGNNNCTG 2 cut(s) 122, 865
CciI TCATGA 1 cut(s) 310
CfoI GCGC 3 cut(s) 1055, 1422, 1424
Cfr13I GGNCC 4 cut(s) 164, 706, 950, 1460
CseI GACGC 2 cut(s) 429, 1281
Csp6I GTAC 3 cut(s) 330, 368, 775
CviAII CATG 5 cut(s) 311, 343, 526, 761, 1150
CviQI GTAC 3 cut(s) 330, 368, 775
DdeI CTNAG 5 cut(s) 219, 290, 771, 832, 1475
DpnI GATC 5 cut(s) 822, 846, 989, 1071, 1142
DpnII GATC 5 cut(s) 820, 844, 987, 1069, 1140
DraI TTTAAA 1 cut(s) 646
DraIII CACNNNGTG 1 cut(s) 593
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 3 cut(s) 154, 750, 856
Ecl136II GAGCTC 1 cut(s) 175
Eco147I AGGCCT 1 cut(s) 69
Eco24I GRGCYC 1 cut(s) 177
Eco47I GGWCC 4 cut(s) 164, 706, 950, 1460
Eco53kI GAGCTC 1 cut(s) 175
Eco57I CTGAAG 2 cut(s) 288, 303
Eco72I CACGTG 1 cut(s) 1100
Eco81I CCTNAGG 1 cut(s) 832
EcoICRI GAGCTC 1 cut(s) 175
EcoNI CCTNNNNNAGG 1 cut(s) 1060
EcoRII CCWGG 1 cut(s) 69
EcoT38I GRGCYC 1 cut(s) 177
FaeI CATG 5 cut(s) 314, 346, 529, 764, 1153
FalI AAGNNNNNCTT 2 cut(s) 1029, 1061
FaqI GGGAC 2 cut(s) 963, 1473
FatI CATG 5 cut(s) 310, 342, 525, 760, 1149
FauNDI CATATG 1 cut(s) 732
FokI GGATG 1 cut(s) 1208
FriOI GRGCYC 1 cut(s) 177
FspBI CTAG 4 cut(s) 65, 134, 374, 1124
GlaI GCGC 3 cut(s) 1054, 1421, 1423
GsuI CTGGAG 2 cut(s) 582, 1156
HaeII RGCGCY 1 cut(s) 1056
HaeIII GGCC 5 cut(s) 69, 156, 752, 858, 1082
HgaI GACGC 2 cut(s) 429, 1281
HhaI GCGC 3 cut(s) 1055, 1422, 1424
Hin1II CATG 5 cut(s) 314, 346, 529, 764, 1153
Hin6I GCGC 3 cut(s) 1053, 1420, 1422
HinP1I GCGC 3 cut(s) 1053, 1420, 1422
HincII GTYRAC 1 cut(s) 139
HindII GTYRAC 1 cut(s) 139
HinfI GANTC 4 cut(s) 536, 852, 1240, 1278
HphI GGTGA 2 cut(s) 901, 907
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 3 cut(s) 422, 867, 1297
Hpy188III TCNNGA 4 cut(s) 311, 517, 1138, 1173
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 2 cut(s) 958, 1088
HpyAV CCTTC 2 cut(s) 101, 417
HpyCH4III ACNGT 3 cut(s) 102, 1164, 1464
HpyCH4IV ACGT 3 cut(s) 318, 1099, 1197
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 446, 755, 935, 938, 1037, 1046, 1310, 1350
HpyF3I CTNAG 5 cut(s) 219, 290, 771, 832, 1475
HpySE526I ACGT 3 cut(s) 318, 1099, 1197
Hsp92II CATG 5 cut(s) 314, 346, 529, 764, 1153
HspAI GCGC 3 cut(s) 1053, 1420, 1422
Kzo9I GATC 5 cut(s) 820, 844, 987, 1069, 1140
LmnI GCTCC 5 cut(s) 172, 601, 1175, 1289, 1467
Lsp1109I GCAGC 9 cut(s) 474, 490, 889, 925, 938, 941, 952, 1010, 1216
LweI GCATC 2 cut(s) 265, 1230
MaeI CTAG 4 cut(s) 65, 134, 374, 1124
MaeII ACGT 3 cut(s) 318, 1099, 1197
MaeIII GTNAC 3 cut(s) 585, 916, 1237
MalI GATC 5 cut(s) 822, 846, 989, 1071, 1142
MboI GATC 5 cut(s) 820, 844, 987, 1069, 1140
MboII GAAGA 6 cut(s) 19, 281, 284, 296, 371, 599
MfeI CAATTG 1 cut(s) 675
MflI RGATCY 2 cut(s) 844, 987
MhlI GDGCHC 2 cut(s) 177, 598
MlsI TGGCCA 1 cut(s) 156
MluCI AATT 8 cut(s) 189, 228, 495, 520, 541, 675, 803, 1282
MluNI TGGCCA 1 cut(s) 156
MlyI GAGTC 2 cut(s) 1234, 1287
MmeI TCCRAC 2 cut(s) 166, 1411
Mox20I TGGCCA 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 306
MscI TGGCCA 1 cut(s) 156
MseI TTAA 5 cut(s) 645, 716, 779, 806, 1251
MslI CAYNNNNRTG 4 cut(s) 341, 347, 735, 1148
Msp20I TGGCCA 1 cut(s) 156
MspA1I CMGCKG 1 cut(s) 602
MspR9I CCNGG 1 cut(s) 71
MunI CAATTG 1 cut(s) 675
Mva1269I GAATGC 2 cut(s) 146, 968
MvaI CCWGG 1 cut(s) 71
MvnI CGCG 2 cut(s) 179, 1422
MwoI GCNNNNNNNGC 9 cut(s) 113, 446, 755, 935, 938, 1037, 1046, 1310, 1350
NdeI CATATG 1 cut(s) 732
NdeII GATC 5 cut(s) 820, 844, 987, 1069, 1140
NlaIII CATG 5 cut(s) 314, 346, 529, 764, 1153
NlaIV GGNNCC 4 cut(s) 708, 951, 1171, 1461
NmuCI GTSAC 2 cut(s) 585, 1237
PagI TCATGA 1 cut(s) 310
PauI GCGCGC 1 cut(s) 1420
PceI AGGCCT 1 cut(s) 69
PctI GAATGC 2 cut(s) 146, 968
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 2 cut(s) 536, 852
PflMI CCANNNNNTGG 1 cut(s) 377
PleI GAGTC 2 cut(s) 1234, 1286
PmaCI CACGTG 1 cut(s) 1100
PmlI CACGTG 1 cut(s) 1100
PpsI GAGTC 2 cut(s) 1234, 1286
Ppu21I YACGTR 1 cut(s) 1100
PshBI ATTAAT 1 cut(s) 716
PsiI TTATAA 1 cut(s) 1211
Psp124BI GAGCTC 1 cut(s) 177
Psp1406I AACGTT 2 cut(s) 318, 1197
Psp6I CCWGG 1 cut(s) 69
PspCI CACGTG 1 cut(s) 1100
PspGI CCWGG 1 cut(s) 69
PspN4I GGNNCC 4 cut(s) 708, 951, 1171, 1461
PspPI GGNCC 4 cut(s) 164, 706, 950, 1460
PstNI CAGNNNCTG 2 cut(s) 122, 865
PsuI RGATCY 2 cut(s) 844, 987
PteI GCGCGC 1 cut(s) 1420
PvuII CAGCTG 1 cut(s) 602
RsaI GTAC 3 cut(s) 331, 369, 776
RsaNI GTAC 3 cut(s) 330, 368, 775
RseI CAYNNNNRTG 4 cut(s) 341, 347, 735, 1148
SacI GAGCTC 1 cut(s) 177
SaqAI TTAA 5 cut(s) 645, 716, 779, 806, 1251
Sau3AI GATC 5 cut(s) 820, 844, 987, 1069, 1140
Sau96I GGNCC 4 cut(s) 164, 706, 950, 1460
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 2 cut(s) 1234, 1287
ScrFI CCNGG 1 cut(s) 71
SduI GDGCHC 2 cut(s) 177, 598
SfaNI GCATC 2 cut(s) 265, 1230
SinI GGWCC 4 cut(s) 164, 706, 950, 1460
SmiMI CAYNNNNRTG 4 cut(s) 341, 347, 735, 1148
SmlI CTYRAG 1 cut(s) 410
SmoI CTYRAG 1 cut(s) 410
SpeI ACTAGT 1 cut(s) 373
Sse9I AATT 8 cut(s) 189, 228, 495, 520, 541, 675, 803, 1282
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 3 cut(s) 179, 236, 749
SspI AATATT 2 cut(s) 714, 1179
SspMI CTAG 4 cut(s) 65, 134, 374, 1124
SstI GAGCTC 1 cut(s) 177
StuI AGGCCT 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 69
TaaI ACNGT 3 cut(s) 102, 1164, 1464
TaiI ACGT 3 cut(s) 321, 1102, 1200
TaqI TCGA 1 cut(s) 1139
TaqII GACCGA 1 cut(s) 967
TasI AATT 8 cut(s) 189, 228, 495, 520, 541, 675, 803, 1282
TatI WGTACW 1 cut(s) 774
TauI GCSGC 2 cut(s) 182, 752
TfiI GAWTC 2 cut(s) 536, 852
Tru1I TTAA 5 cut(s) 645, 716, 779, 806, 1251
Tru9I TTAA 5 cut(s) 645, 716, 779, 806, 1251
TscAI CASTG 4 cut(s) 105, 174, 1242, 1431
TseFI GTSAC 2 cut(s) 585, 1237
TseI GCWGC 9 cut(s) 462, 503, 902, 926, 929, 938, 965, 998, 1204
Tsp45I GTSAC 2 cut(s) 585, 1237
TspDTI ATGAA 3 cut(s) 299, 315, 327
TspGWI ACGGA 1 cut(s) 410
TspRI CASTG 4 cut(s) 105, 174, 1242, 1431
Van91I CCANNNNNTGG 1 cut(s) 377
VpaK11BI GGWCC 4 cut(s) 164, 706, 950, 1460
VspI ATTAAT 1 cut(s) 716
XagI CCTNNNNNAGG 1 cut(s) 1060
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 1379
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 4 cut(s) 65, 134, 374, 1124
ZrmI AGTACT 1 cut(s) 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.