Rw0G002690

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00084
OG0001107
Physical Location & Seq
Forward (+)
34793 .. 41765
6973 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002690.1

Sequence Viewer

Length: 1518 bp
ATGGCTATATATACTCTCCTAAATTGTTGCAAGAATATGGGCAAGATGCCCCTCCTTGTGTTCTTCAAAGACACAAGGAATGTTTTCAAAGCTGATGAGCTAGGCGTGGAGATAGTACATATTGCACTTCCTACGCTACTAGCGTTAGTAGCAGACCCTGCTGCTTCTCTAATTGACACAGCGTTTGTTGGCCATATAGGTCCAGTGGAGCTCGCAGCTGTGGGAATTTCTATTGCTGTTTTCAATCAAGTATCAAAAATAGCAATTTTCCCACTTGTCAGTATTACAACGTCTTTTGTTGCTGAAGAAGATACTACGGAACCATTAAGTACTAAAGAACAAGTATATGAAGAATTTGAAAATGCTACTTCTGTCAACAAGGAAATGGAAGTACTCAAACCACTTGTCGACTCTACACCATCATCCATTTCCAATGATAGTACAGAAATGGTCAAACTTGAGCATGTCAGAAGGCGTATTCCATCTGCTTCATCAGCATTGGTTATTGGCAGCGTCCTGGGGGTTATTCAAACTCTATTCCTTATTTTTGCGGCAAACCCCATCCTAAATTACATGGGGGTAGATTCTAATTCTCCTATGTTAAGACCAGCGAGACAATACCTGACACTAAGGTCACTTGGTGCTCCTGCAGTTCTTCTCTCTTTGGCCATGCAGGGGGTTTTCCGTGGTTTTAAGGATACAAAAACTCCTTTATATGCTACAATTGTGGGAGATACAGTAAACATCATTTTGGACCCAATATTAATGTTTGTACTCCATATGGGAATTACCGGTGCGGCCATTGCCCATGTTATCTCTCAGTATTTAATCTCCCTGATACTGTTATGGAGATTAAACAAACAAGTTGATCTCCTAACCCCAGGCATCAAAGATCTACGAATTGGCCAGTTTCTGAAAAATGTTATAGCTGCAACATTCTGTGTCACCCTGGCAGCATCATTAGCTGCGAGGCAGGGATCGACATCAATGGCAGCATTTCAAGTTTGCTTGCAGATTTGGCTTGCAGCCTCTTTGCTTGCGGATGGGTTAGCTGTGGCTGGACAAGCAATCCTTGCAAGTGCATTTGCAAGGAAGGATCACAGCAAGGTCGTTGCCACAGCTTCACGTGTATTGCAGATGGCTTTGGTTCTAGGGATAGTGCTCTCAGTCATCCTTACAGTTGTACTAAAGTTTGCGTCAAGATTATTTACCGATGATATCGATGTTTTGCACCTTATAAGTTTAGGCATTCCGTTTATTGCAGTGACTCAGCCCATTAATGCTCTGGCATTTGTTTTTGATGGAGTAAATTATGGAGCATCAGATTTTGCATATTCTGCCTACTCAATGGTGTTGGTGGCTTTAGTGAGCATATTGTGCCTGTTTCTATTATCATCGAGCCATGGCTTTGTTGGTATCTGGGTTGCTTTAACAATCTTCATGAGTTGCGCACAGTGGTTGGATTTTGGAGGTAAGATAGGGACTGGAACTGGACCATGGAGCTTTCTGAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MatE

Protein Analysis

505

Amino Acids

54.27

Weight (kDa)

6.25

Isoelectric Point (pI)

30.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 163 - 254 1.7e-12 MatE
MatE PF01554 311 - 459 4.7e-14 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1238
AasI GACNNNNNNGTC 1 cut(s) 631
Acc16I TGCGCA 1 cut(s) 1450
AccI GTMKAC 1 cut(s) 408
AciI CCGC 3 cut(s) 551, 797, 1040
AclWI GGATC 2 cut(s) 985, 1104
AcoI YGGCCR 4 cut(s) 190, 666, 798, 904
AcsI RAATTY 2 cut(s) 225, 353
AcuI CTGAAG 1 cut(s) 324
AcvI CACGTG 1 cut(s) 1127
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 6 cut(s) 117, 331, 393, 442, 774, 1185
AfiI CCNNNNNNNGG 1 cut(s) 675
AflIII ACRYGT 1 cut(s) 1126
AgeI ACCGGT 1 cut(s) 791
AgsI TTSAA 6 cut(s) 67, 88, 244, 359, 530, 1001
AjnI CCWGG 3 cut(s) 516, 880, 948
AluBI AGCT 9 cut(s) 92, 100, 211, 218, 929, 965, 1052, 1121, 1503
AluI AGCT 9 cut(s) 92, 100, 211, 218, 929, 965, 1052, 1121, 1503
Alw21I GWGCWC 3 cut(s) 213, 646, 1164
Alw26I GTCTC 1 cut(s) 607
AlwI GGATC 2 cut(s) 985, 1104
AlwNI CAGNNNCTG 2 cut(s) 158, 913
AoxI GGCC 4 cut(s) 190, 666, 798, 904
ApeKI GCWGC 8 cut(s) 161, 215, 510, 929, 953, 965, 992, 1025
ApoI RAATTY 2 cut(s) 225, 353
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 390, 422
AseI ATTAAT 2 cut(s) 764, 1278
AsiGI ACCGGT 1 cut(s) 791
Asp700I GAANNNNTTC 1 cut(s) 83
AspLEI GCGC 1 cut(s) 1451
AspS9I GGNCC 3 cut(s) 200, 754, 1493
AsuHPI GGTGA 1 cut(s) 937
AvaII GGWCC 3 cut(s) 200, 754, 1493
BalI TGGCCA 3 cut(s) 192, 668, 906
BanII GRGCYC 1 cut(s) 213
BbrPI CACGTG 1 cut(s) 1127
Bbv12I GWGCWC 3 cut(s) 213, 646, 1164
BbvI GCAGC 8 cut(s) 148, 227, 522, 916, 952, 965, 1004, 1037
BccI CCATC 6 cut(s) 427, 490, 569, 1037, 1132, 1295
BciT130I CCWGG 3 cut(s) 518, 882, 950
BciVI GTATCC 1 cut(s) 691
BcoDI GTCTC 1 cut(s) 607
BfaI CTAG 3 cut(s) 101, 140, 1151
BfmI CTRYAG 1 cut(s) 648
BfuI GTATCC 1 cut(s) 691
BglII AGATCT 1 cut(s) 892
BmcAI AGTACT 2 cut(s) 331, 393
Bme1390I CCNGG 3 cut(s) 518, 882, 950
Bme18I GGWCC 3 cut(s) 200, 754, 1493
BmgT120I GGNCC 3 cut(s) 200, 754, 1493
BmiI GGNNCC 2 cut(s) 321, 756
BmrFI CCNGG 3 cut(s) 518, 882, 950
BmsI GCATC 4 cut(s) 36, 894, 965, 1328
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 1221
BsaAI YACGTR 1 cut(s) 1127
BsaBI GATNNNNATC 1 cut(s) 982
BsaJI CCNNGG 6 cut(s) 517, 685, 880, 948, 1402, 1496
BsaWI WCCGGW 1 cut(s) 791
BsaXI ACNNNNNCTCC 4 cut(s) 691, 721, 723, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 675
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 4 cut(s) 203, 907, 1489, 1495
Bse3DI GCAATG 1 cut(s) 801
Bse8I GATNNNNATC 1 cut(s) 982
BseBI CCWGG 3 cut(s) 518, 882, 950
BseCI ATCGAT 1 cut(s) 1221
BseDI CCNNGG 6 cut(s) 517, 685, 880, 948, 1402, 1496
BseGI GGATG 4 cut(s) 422, 561, 1048, 1170
BseJI GATNNNNATC 1 cut(s) 982
BseLI CCNNNNNNNGG 1 cut(s) 675
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 4 cut(s) 833, 1179, 1283, 1499
BseNI ACTGG 4 cut(s) 203, 907, 1489, 1495
BseXI GCAGC 8 cut(s) 148, 227, 522, 916, 952, 965, 1004, 1037
BshFI GGCC 4 cut(s) 192, 668, 800, 906
BshTI ACCGGT 1 cut(s) 791
BshVI ATCGAT 1 cut(s) 1221
BsiHKAI GWGCWC 3 cut(s) 213, 646, 1164
BsiSI CCGG 1 cut(s) 792
BslFI GGGAC 1 cut(s) 1495
BslI CCNNNNNNNGG 1 cut(s) 675
BsmAI GTCTC 1 cut(s) 607
BsmFI GGGAC 1 cut(s) 1495
BsmI GAATGC 1 cut(s) 1248
BsnI GGCC 4 cut(s) 192, 668, 800, 906
Bsp1286I GDGCHC 3 cut(s) 213, 646, 1164
Bsp143I GATC 4 cut(s) 868, 892, 977, 1096
Bsp19I CCATGG 2 cut(s) 1402, 1496
BspACI CCGC 3 cut(s) 551, 797, 1040
BspANI GGCC 4 cut(s) 192, 668, 800, 906
BspCNI CTCAG 4 cut(s) 832, 1178, 1282, 1500
BspDI ATCGAT 1 cut(s) 1221
BspHI TCATGA 1 cut(s) 1440
BspLI GGNNCC 2 cut(s) 321, 756
BspMAI CTGCAG 1 cut(s) 652
BspPI GGATC 2 cut(s) 985, 1104
BsrDI GCAATG 1 cut(s) 801
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 4 cut(s) 203, 907, 1489, 1495
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 6 cut(s) 517, 685, 880, 948, 1402, 1496
BssMI GATC 4 cut(s) 868, 892, 977, 1096
BssT1I CCWWGG 2 cut(s) 1402, 1496
Bst2UI CCWGG 3 cut(s) 518, 882, 950
Bst4CI ACNGT 4 cut(s) 739, 843, 1180, 1455
BstAPI GCANNNNNTGC 4 cut(s) 158, 1073, 1337, 1377
BstBAI YACGTR 1 cut(s) 1127
BstC8I GCNNGC 4 cut(s) 213, 1010, 1023, 1038
BstDEI CTNAG 5 cut(s) 629, 819, 1165, 1269, 1508
BstDSI CCRYGG 3 cut(s) 685, 1402, 1496
BstF5I GGATG 4 cut(s) 422, 561, 1048, 1170
BstHHI GCGC 1 cut(s) 1451
BstKTI GATC 4 cut(s) 871, 895, 980, 1099
BstMAI GTCTC 1 cut(s) 607
BstMBI GATC 4 cut(s) 868, 892, 977, 1096
BstNI CCWGG 3 cut(s) 518, 882, 950
BstNSI RCATGY 1 cut(s) 467
BstSCI CCNGG 3 cut(s) 516, 880, 948
BstSFI CTRYAG 1 cut(s) 648
BstV1I GCAGC 8 cut(s) 148, 227, 522, 916, 952, 965, 1004, 1037
BstX2I RGATCY 1 cut(s) 892
BstYI RGATCY 1 cut(s) 892
Bsu15I ATCGAT 1 cut(s) 1221
BsuI GTATCC 1 cut(s) 691
BsuRI GGCC 4 cut(s) 192, 668, 800, 906
BsuTUI ATCGAT 1 cut(s) 1221
BtgI CCRYGG 3 cut(s) 685, 1402, 1496
BtsCI GGATG 4 cut(s) 422, 561, 1048, 1170
BtsI GCAGTG 1 cut(s) 1269
BtsIMutI CAGTG 3 cut(s) 210, 1269, 1460
Cac8I GCNNGC 4 cut(s) 213, 1010, 1023, 1038
CaiI CAGNNNCTG 2 cut(s) 158, 913
CciI TCATGA 1 cut(s) 1440
CfoI GCGC 1 cut(s) 1451
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 3 cut(s) 200, 754, 1493
ClaI ATCGAT 1 cut(s) 1221
CseI GACGC 2 cut(s) 502, 1185
Csp6I GTAC 6 cut(s) 116, 330, 392, 441, 773, 1184
CspAI ACCGGT 1 cut(s) 791
CviAII CATG 7 cut(s) 464, 574, 670, 809, 1403, 1441, 1497
CviQI GTAC 6 cut(s) 116, 330, 392, 441, 773, 1184
DdeI CTNAG 5 cut(s) 629, 819, 1165, 1269, 1508
DpnI GATC 4 cut(s) 870, 894, 979, 1098
DpnII GATC 4 cut(s) 868, 892, 977, 1096
DraIII CACNNNGTG 1 cut(s) 641
DrdI GACNNNNNNGTC 1 cut(s) 631
DseDI GACNNNNNNGTC 1 cut(s) 631
EaeI YGGCCR 4 cut(s) 190, 666, 798, 904
Ecl136II GAGCTC 1 cut(s) 211
Eco130I CCWWGG 2 cut(s) 1402, 1496
Eco24I GRGCYC 1 cut(s) 213
Eco32I GATATC 1 cut(s) 1219
Eco47I GGWCC 3 cut(s) 200, 754, 1493
Eco53kI GAGCTC 1 cut(s) 211
Eco57I CTGAAG 1 cut(s) 324
Eco72I CACGTG 1 cut(s) 1127
EcoICRI GAGCTC 1 cut(s) 211
EcoRII CCWGG 3 cut(s) 516, 880, 948
EcoRV GATATC 1 cut(s) 1219
EcoT14I CCWWGG 2 cut(s) 1402, 1496
EcoT38I GRGCYC 1 cut(s) 213
ErhI CCWWGG 2 cut(s) 1402, 1496
FaeI CATG 7 cut(s) 467, 577, 673, 812, 1406, 1444, 1500
FalI AAGNNNNNCTT 2 cut(s) 1056, 1088
FaqI GGGAC 1 cut(s) 1495
FatI CATG 7 cut(s) 463, 573, 669, 808, 1402, 1440, 1496
FauNDI CATATG 1 cut(s) 780
FblI GTMKAC 1 cut(s) 408
FokI GGATG 4 cut(s) 409, 548, 1055, 1157
FriOI GRGCYC 1 cut(s) 213
FspBI CTAG 3 cut(s) 101, 140, 1151
FspI TGCGCA 1 cut(s) 1450
GlaI GCGC 1 cut(s) 1450
HaeIII GGCC 4 cut(s) 192, 668, 800, 906
HapII CCGG 1 cut(s) 792
HgaI GACGC 2 cut(s) 502, 1185
HhaI GCGC 1 cut(s) 1451
Hin1II CATG 7 cut(s) 467, 577, 673, 812, 1406, 1444, 1500
Hin6I GCGC 1 cut(s) 1449
HinP1I GCGC 1 cut(s) 1449
HincII GTYRAC 2 cut(s) 376, 409
HindII GTYRAC 2 cut(s) 376, 409
HinfI GANTC 3 cut(s) 410, 584, 1267
HpaII CCGG 1 cut(s) 792
HphI GGTGA 1 cut(s) 937
Hpy166II GTNNAC 3 cut(s) 376, 409, 742
Hpy188I TCNGA 4 cut(s) 470, 915, 1324, 1509
Hpy188III TCNNGA 2 cut(s) 1200, 1441
Hpy8I GTNNAC 3 cut(s) 376, 409, 742
HpyAV CCTTC 2 cut(s) 465, 1087
HpyCH4III ACNGT 4 cut(s) 739, 843, 1180, 1455
HpyCH4IV ACGT 2 cut(s) 290, 1126
HpyF3I CTNAG 5 cut(s) 629, 819, 1165, 1269, 1508
HpySE526I ACGT 2 cut(s) 290, 1126
Hsp92II CATG 7 cut(s) 467, 577, 673, 812, 1406, 1444, 1500
HspAI GCGC 1 cut(s) 1449
Kzo9I GATC 4 cut(s) 868, 892, 977, 1096
LmnI GCTCC 4 cut(s) 208, 649, 1316, 1500
Lsp1109I GCAGC 8 cut(s) 148, 227, 522, 916, 952, 965, 1004, 1037
LweI GCATC 4 cut(s) 36, 894, 965, 1328
MaeI CTAG 3 cut(s) 101, 140, 1151
MaeII ACGT 2 cut(s) 290, 1126
MaeIII GTNAC 3 cut(s) 633, 943, 1264
MalI GATC 4 cut(s) 870, 894, 979, 1098
MboI GATC 4 cut(s) 868, 892, 977, 1096
MboII GAAGA 6 cut(s) 55, 317, 320, 362, 647, 1429
MfeI CAATTG 1 cut(s) 723
MflI RGATCY 1 cut(s) 892
MhlI GDGCHC 3 cut(s) 213, 646, 1164
MlsI TGGCCA 3 cut(s) 192, 668, 906
MluNI TGGCCA 3 cut(s) 192, 668, 906
MlyI GAGTC 2 cut(s) 404, 1261
MmeI TCCRAC 1 cut(s) 1440
MnlI CCTC 5 cut(s) 62, 963, 1039, 1463, 1503
Mox20I TGGCCA 3 cut(s) 192, 668, 906
MroXI GAANNNNTTC 1 cut(s) 83
MscI TGGCCA 3 cut(s) 192, 668, 906
MseI TTAA 8 cut(s) 326, 602, 693, 764, 827, 854, 1278, 1430
Msp20I TGGCCA 3 cut(s) 192, 668, 906
MspA1I CMGCKG 1 cut(s) 218
MspI CCGG 1 cut(s) 792
MspR9I CCNGG 3 cut(s) 518, 882, 950
MunI CAATTG 1 cut(s) 723
Mva1269I GAATGC 1 cut(s) 1248
MvaI CCWGG 3 cut(s) 518, 882, 950
NcoI CCATGG 2 cut(s) 1402, 1496
NdeI CATATG 1 cut(s) 780
NdeII GATC 4 cut(s) 868, 892, 977, 1096
NlaIII CATG 7 cut(s) 467, 577, 673, 812, 1406, 1444, 1500
NlaIV GGNNCC 2 cut(s) 321, 756
NmuCI GTSAC 3 cut(s) 633, 943, 1264
NsbI TGCGCA 1 cut(s) 1450
NspI RCATGY 1 cut(s) 467
PagI TCATGA 1 cut(s) 1440
PcsI WCGNNNNNNNCGW 1 cut(s) 140
PctI GAATGC 1 cut(s) 1248
PdmI GAANNNNTTC 1 cut(s) 83
PfeI GAWTC 1 cut(s) 584
PinAI ACCGGT 1 cut(s) 791
PleI GAGTC 2 cut(s) 404, 1261
PmaCI CACGTG 1 cut(s) 1127
PmlI CACGTG 1 cut(s) 1127
PpsI GAGTC 2 cut(s) 404, 1261
Ppu21I YACGTR 1 cut(s) 1127
PshBI ATTAAT 2 cut(s) 764, 1278
PsiI TTATAA 1 cut(s) 1238
Psp124BI GAGCTC 1 cut(s) 213
Psp6I CCWGG 3 cut(s) 516, 880, 948
PspCI CACGTG 1 cut(s) 1127
PspGI CCWGG 3 cut(s) 516, 880, 948
PspN4I GGNNCC 2 cut(s) 321, 756
PspPI GGNCC 3 cut(s) 200, 754, 1493
PstI CTGCAG 1 cut(s) 652
PstNI CAGNNNCTG 2 cut(s) 158, 913
PsuI RGATCY 1 cut(s) 892
PvuII CAGCTG 1 cut(s) 218
RsaI GTAC 6 cut(s) 117, 331, 393, 442, 774, 1185
RsaNI GTAC 6 cut(s) 116, 330, 392, 441, 773, 1184
SacI GAGCTC 1 cut(s) 213
SalI GTCGAC 1 cut(s) 407
SaqAI TTAA 8 cut(s) 326, 602, 693, 764, 827, 854, 1278, 1430
Sau3AI GATC 4 cut(s) 868, 892, 977, 1096
Sau96I GGNCC 3 cut(s) 200, 754, 1493
ScaI AGTACT 2 cut(s) 331, 393
SchI GAGTC 2 cut(s) 404, 1261
ScrFI CCNGG 3 cut(s) 518, 882, 950
SduI GDGCHC 3 cut(s) 213, 646, 1164
SfaNI GCATC 4 cut(s) 36, 894, 965, 1328
SfcI CTRYAG 1 cut(s) 648
SinI GGWCC 3 cut(s) 200, 754, 1493
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SsiI CCGC 3 cut(s) 551, 797, 1040
SspI AATATT 1 cut(s) 762
SspMI CTAG 3 cut(s) 101, 140, 1151
SstI GAGCTC 1 cut(s) 213
StyD4I CCNGG 3 cut(s) 516, 880, 948
StyI CCWWGG 2 cut(s) 1402, 1496
TaaI ACNGT 4 cut(s) 739, 843, 1180, 1455
TaiI ACGT 2 cut(s) 293, 1129
TaqI TCGA 4 cut(s) 408, 980, 1221, 1397
TatI WGTACW 6 cut(s) 115, 329, 391, 440, 772, 1183
TauI GCSGC 2 cut(s) 554, 800
TfiI GAWTC 1 cut(s) 584
Tru1I TTAA 8 cut(s) 326, 602, 693, 764, 827, 854, 1278, 1430
Tru9I TTAA 8 cut(s) 326, 602, 693, 764, 827, 854, 1278, 1430
TscAI CASTG 3 cut(s) 210, 1269, 1460
TseFI GTSAC 3 cut(s) 633, 943, 1264
TseI GCWGC 8 cut(s) 161, 215, 510, 929, 953, 965, 992, 1025
Tsp45I GTSAC 3 cut(s) 633, 943, 1264
TspDTI ATGAA 3 cut(s) 363, 480, 1429
TspGWI ACGGA 3 cut(s) 332, 674, 1242
TspRI CASTG 3 cut(s) 210, 1269, 1460
VpaK11BI GGWCC 3 cut(s) 200, 754, 1493
VspI ATTAAT 2 cut(s) 764, 1278
XapI RAATTY 2 cut(s) 225, 353
XceI RCATGY 1 cut(s) 467
XcmI CCANNNNNNNNNTGG 2 cut(s) 1282, 1409
XmiI GTMKAC 1 cut(s) 408
XmnI GAANNNNTTC 1 cut(s) 83
XspI CTAG 3 cut(s) 101, 140, 1151
ZrmI AGTACT 2 cut(s) 331, 393
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.