Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000466.1

Orthogroup ID

OG0001107

Physical Location & Seq

Genomic Coordinates Forward (+)

54675 .. 59314

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000466.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

atggctgaagaaggtgaatcatattcctatgaaaacagaaagaatactcctatcttgattttctttaaggatctcagatatgtttttaagttggacaaacttggtttagaaatagcgtcgattgcattgcctgcagcacttgctttgacagctgatccaatcgcatctctaatcgacacagcattcattggacaaataggttcagtggagcttgctgctgtaggagtatcaattgctttgttcaatcaagtatcaagaatcgcaatatttccacttgttagtgtcacaacctcttttgttgctgaagaagacactattggtagagcgagacctgaagaaaatgagaacagtcacctggaaacatgttcaccaacgaatggggaaactaaacagttgttaccagaaactgatactggtaagaatacatacaactcaaaaccggttgatgtaagcttcgatatagttgcaaccggtcataaaaaaaggtatatcccatcagcatcatcagcaatggttattggcggcattcttggatttattcaagccatattcctcatatctggagcaaaacctctattgaacttcatgggagtcagctctgattccccaatgctcaagccagcacaacagtacttgatgttgaggtcgctcggtgctcctgcggttcttctttcactggctatgcaaggagtcttccgtgggttcaaggatacaaaaactcctttatttgccactgtggtcggagatgcaacaaatataattttagatccaatatttatattcgtttttcatctcggtgtgaatggtgcagctattgcccatgttatatctcagtatttaatgtcagtcatcctgttttggagattaatagctcatgttgatctcttacccccaagtgttgaacatctccaatttggtcgatttcttaaaaatggttttctattattgatgagggtcattgcggttacattctgcgtgaccctggctgcatcattggctgcacgccagggaccaacatccatggctgcatttcaggtctgcttgcaagtttggttggcaacatctcttctagctgacggactggctgttgcaggacagttaggattggttttggggttggtgcttgcattcatgctcggagtggggttgcagtatggagcaaggttatttacaaaagatgtcactgtcctgcatcttattggcataggcataccatttgttgctgccactcaacccatcaatgccttggcatttgtttttgacggcgtcaactttggaggctctgattttgcctatgcagcattttctatggcaagtcttctgccctctttcttgcactataatttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006842 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0022857 GO:0034220 GO:0035674 GO:0042221 GO:0042493 GO:0042891 GO:0042895 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

449

Amino Acids

48.13

Weight (kDa)

6.07

Isoelectric Point (pI)

25.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51340 AT1G51340 AT1G51340 AT1G51340 AT1G51340
fragaria_vesca	FvH4_3g28870 FvH4_3g28870 FvH4_3g28870 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370
malus_domestica	MD03G1175500.v1.1 MD11G1193400.v1.1
prunus_persica	Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G250300_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1
pyrus_communis	pycom03g13300 pycom11g16890
rosa_chinensis	RchiOBHm_Chr3g0481351 RchiOBHm_Chr5g0052011
rosa_laevigata	RLG00000023404 RLG00000034848
rosa_multiflora	Rmu_sc0005445.1_g000002 Rmu_sc0018231.1_g000001 Rmu_ssc0000466.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027790 Rroxscaffold_6G00400490
rosa_rugosa	Rorug03G0191300 Rorug03G0191400 Rorug05G0275600
rosa_samantha	Rh3AG242200 Rh3BG277400 Rh3CG272400 Rh3DG269200 Rh5AG347400 Rh5BG358300 Rh5CG383800 Rh5DG373800
rosa_wichuraiana	Rw0G002690 Rw3G021650 Rw5G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	377
AciI	CCGC	3 cut(s)	522, 662, 962
AclWI	GGATC	3 cut(s)	78, 149, 761
AcuI	CTGAAG	3 cut(s)	27, 324, 354
AcyI	GRCGYC	1 cut(s)	1266
AfaI	GTAC	1 cut(s)	632
AfiI	CCNNNNNNNGG	1 cut(s)	377
AflIII	ACRYGT	1 cut(s)	362
AgeI	ACCGGT	2 cut(s)	439, 470
AgsI	TTSAA	5 cut(s)	244, 542, 580, 706, 902
AjnI	CCWGG	3 cut(s)	354, 981, 1005
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AluBI	AGCT	7 cut(s)	152, 211, 453, 597, 812, 872, 1073
AluI	AGCT	7 cut(s)	152, 211, 453, 597, 812, 872, 1073
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	322
AlwI	GGATC	3 cut(s)	78, 149, 761
AlwNI	CAGNNNCTG	1 cut(s)	407
ApeKI	GCWGC	8 cut(s)	134, 215, 809, 986, 998, 1025, 1223, 1298
AseI	ATTAAT	1 cut(s)	866
AsiGI	ACCGGT	2 cut(s)	439, 470
AspS9I	GGNCC	1 cut(s)	1010
AsuHPI	GGTGA	3 cut(s)	26, 344, 360
AvaII	GGWCC	1 cut(s)	1010
BbsI	GAAGAC	3 cut(s)	315, 685, 1310
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	8 cut(s)	146, 202, 821, 973, 985, 1012, 1210, 1310
BccI	CCATC	2 cut(s)	502, 1244
BceAI	ACGGC	1 cut(s)	1279
BcgI	CGANNNNNNTGC	4 cut(s)	109, 143, 446, 480
BciT130I	CCWGG	3 cut(s)	356, 983, 1007
BciVI	GTATCC	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	322
BfaI	CTAG	1 cut(s)	1070
BfmI	CTRYAG	2 cut(s)	132, 219
BfuI	GTATCC	1 cut(s)	703
BisI	GCNGC	9 cut(s)	135, 216, 523, 810, 987, 999, 1026, 1224, 1299
BlsI	GCNGC	9 cut(s)	136, 217, 524, 811, 988, 1000, 1027, 1225, 1300
BmcAI	AGTACT	1 cut(s)	632
Bme1390I	CCNGG	3 cut(s)	356, 983, 1007
Bme18I	GGWCC	1 cut(s)	1010
BmgT120I	GGNCC	1 cut(s)	1010
BmiI	GGNNCC	1 cut(s)	1011
BmrFI	CCNGG	3 cut(s)	356, 983, 1007
BmsI	GCATC	5 cut(s)	173, 509, 736, 998, 1201
BpiI	GAAGAC	3 cut(s)	315, 685, 1310
BpmI	CTGGAG	1 cut(s)	582
BpuEI	CTTGAG	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	1266
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	5 cut(s)	697, 981, 1006, 1020, 1245
BsaWI	WCCGGW	2 cut(s)	439, 470
BsaXI	ACNNNNNCTCC	2 cut(s)	703, 733
Bsc4I	CCNNNNNNNGG	1 cut(s)	377
Bse118I	RCCGGY	2 cut(s)	439, 470
Bse1I	ACTGG	3 cut(s)	418, 681, 1086
Bse3DI	GCAATG	3 cut(s)	125, 516, 957
BseBI	CCWGG	3 cut(s)	356, 983, 1007
BseDI	CCNNGG	5 cut(s)	697, 981, 1006, 1020, 1245
BseGI	GGATG	2 cut(s)	849, 1016
BseLI	CCNNNNNNNGG	1 cut(s)	377
BseMI	GCAATG	3 cut(s)	125, 516, 957
BseMII	CTCAG	2 cut(s)	88, 845
BseNI	ACTGG	3 cut(s)	418, 681, 1086
BseXI	GCAGC	8 cut(s)	146, 202, 821, 973, 985, 1012, 1210, 1310
BsgI	GTGCAG	2 cut(s)	828, 984
BshTI	ACCGGT	2 cut(s)	439, 470
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	2 cut(s)	440, 471
BslFI	GGGAC	1 cut(s)	1023
BslI	CCNNNNNNNGG	1 cut(s)	377
BsmAI	GTCTC	1 cut(s)	322
BsmFI	GGGAC	1 cut(s)	1023
BsmI	GAATGC	3 cut(s)	182, 525, 1127
Bso31I	GGTCTC	1 cut(s)	322
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	4 cut(s)	70, 154, 766, 880
Bsp19I	CCATGG	1 cut(s)	1020
BspACI	CCGC	3 cut(s)	522, 662, 962
BspCNI	CTCAG	2 cut(s)	87, 844
BspLI	GGNNCC	1 cut(s)	1011
BspMAI	CTGCAG	1 cut(s)	136
BspPI	GGATC	3 cut(s)	78, 149, 761
BspTNI	GGTCTC	1 cut(s)	322
BsrDI	GCAATG	3 cut(s)	125, 516, 957
BsrFI	RCCGGY	2 cut(s)	439, 470
BsrI	ACTGG	3 cut(s)	418, 681, 1086
BssAI	RCCGGY	2 cut(s)	439, 470
BssECI	CCNNGG	5 cut(s)	697, 981, 1006, 1020, 1245
BssMI	GATC	4 cut(s)	70, 154, 766, 880
BssNI	GRCGYC	1 cut(s)	1266
BssT1I	CCWWGG	2 cut(s)	1020, 1245
Bst2UI	CCWGG	3 cut(s)	356, 983, 1007
Bst4CI	ACNGT	6 cut(s)	350, 393, 630, 736, 1098, 1186
Bst6I	CTCTTC	1 cut(s)	1071
BstACI	GRCGYC	1 cut(s)	1266
BstAPI	GCANNNNNTGC	3 cut(s)	131, 140, 815
BstC8I	GCNNGC	6 cut(s)	132, 213, 621, 1003, 1043, 1125
BstDEI	CTNAG	2 cut(s)	74, 831
BstDSI	CCRYGG	2 cut(s)	697, 1020
BstF5I	GGATG	2 cut(s)	849, 1016
BstKTI	GATC	4 cut(s)	73, 157, 769, 883
BstMAI	GTCTC	1 cut(s)	322
BstMBI	GATC	4 cut(s)	70, 154, 766, 880
BstMWI	GCNNNNNNNGC	8 cut(s)	122, 131, 140, 149, 506, 815, 995, 1298
BstNI	CCWGG	3 cut(s)	356, 983, 1007
BstNSI	RCATGY	1 cut(s)	366
BstSCI	CCNGG	3 cut(s)	354, 981, 1005
BstSFI	CTRYAG	2 cut(s)	132, 219
BstV1I	GCAGC	8 cut(s)	146, 202, 821, 973, 985, 1012, 1210, 1310
BstV2I	GAAGAC	3 cut(s)	315, 685, 1310
BstX2I	RGATCY	2 cut(s)	70, 766
BstYI	RGATCY	2 cut(s)	70, 766
BsuI	GTATCC	1 cut(s)	703
BtgI	CCRYGG	2 cut(s)	697, 1020
BtsCI	GGATG	2 cut(s)	849, 1016
BtsIMutI	CAGTG	4 cut(s)	210, 674, 732, 1182
Cac8I	GCNNGC	6 cut(s)	132, 213, 621, 1003, 1043, 1125
CaiI	CAGNNNCTG	1 cut(s)	407
Cfr10I	RCCGGY	2 cut(s)	439, 470
Cfr13I	GGNCC	1 cut(s)	1010
CseI	GACGC	2 cut(s)	105, 1255
Csp6I	GTAC	1 cut(s)	631
CspAI	ACCGGT	2 cut(s)	439, 470
CviAII	CATG	6 cut(s)	363, 586, 821, 875, 1021, 1132
CviQI	GTAC	1 cut(s)	631
DdeI	CTNAG	2 cut(s)	74, 831
DpnI	GATC	4 cut(s)	72, 156, 768, 882
DpnII	GATC	4 cut(s)	70, 154, 766, 880
Eam1104I	CTCTTC	1 cut(s)	1071
EarI	CTCTTC	1 cut(s)	1071
Eco130I	CCWWGG	2 cut(s)	1020, 1245
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	1010
Eco57I	CTGAAG	3 cut(s)	27, 324, 354
EcoRII	CCWGG	3 cut(s)	354, 981, 1005
EcoT14I	CCWWGG	2 cut(s)	1020, 1245
ErhI	CCWWGG	2 cut(s)	1020, 1245
FaeI	CATG	6 cut(s)	366, 589, 824, 878, 1024, 1135
FaqI	GGGAC	1 cut(s)	1023
FatI	CATG	6 cut(s)	362, 585, 820, 874, 1020, 1131
Fnu4HI	GCNGC	9 cut(s)	135, 216, 523, 810, 987, 999, 1026, 1224, 1299
FokI	GGATG	2 cut(s)	836, 1003
Fsp4HI	GCNGC	9 cut(s)	135, 216, 523, 810, 987, 999, 1026, 1224, 1299
FspBI	CTAG	1 cut(s)	1070
GluI	GCNGC	9 cut(s)	135, 216, 523, 810, 987, 999, 1026, 1224, 1299
GsuI	CTGGAG	1 cut(s)	582
HapII	CCGG	2 cut(s)	440, 471
HgaI	GACGC	2 cut(s)	105, 1255
Hin1I	GRCGYC	1 cut(s)	1266
Hin1II	CATG	6 cut(s)	366, 589, 824, 878, 1024, 1135
HincII	GTYRAC	1 cut(s)	1270
HindII	GTYRAC	1 cut(s)	1270
HindIII	AAGCTT	1 cut(s)	451
HinfI	GANTC	5 cut(s)	17, 258, 591, 602, 690
HpaII	CCGG	2 cut(s)	440, 471
HphI	GGTGA	3 cut(s)	26, 344, 360
Hpy166II	GTNNAC	2 cut(s)	368, 1270
Hpy188I	TCNGA	5 cut(s)	77, 601, 743, 1139, 1285
Hpy188III	TCNNGA	3 cut(s)	55, 255, 561
Hpy8I	GTNNAC	2 cut(s)	368, 1270
Hpy99I	CGWCG	1 cut(s)	121
HpyAV	CCTTC	1 cut(s)	5
HpyCH4III	ACNGT	6 cut(s)	350, 393, 630, 736, 1098, 1186
HpyF10VI	GCNNNNNNNGC	8 cut(s)	122, 131, 140, 149, 506, 815, 995, 1298
HpyF3I	CTNAG	2 cut(s)	74, 831
Hsp92I	GRCGYC	1 cut(s)	1266
Hsp92II	CATG	6 cut(s)	366, 589, 824, 878, 1024, 1135
Kzo9I	GATC	4 cut(s)	70, 154, 766, 880
LmnI	GCTCC	4 cut(s)	208, 563, 661, 1157
Lsp1109I	GCAGC	8 cut(s)	146, 202, 821, 973, 985, 1012, 1210, 1310
LweI	GCATC	5 cut(s)	173, 509, 736, 998, 1201
MaeI	CTAG	1 cut(s)	1070
MaeIII	GTNAC	6 cut(s)	283, 350, 396, 964, 976, 1180
MalI	GATC	4 cut(s)	72, 156, 768, 882
MboI	GATC	4 cut(s)	70, 154, 766, 880
MboII	GAAGA	8 cut(s)	20, 317, 320, 347, 659, 685, 1058, 1310
MfeI	CAATTG	1 cut(s)	231
MflI	RGATCY	2 cut(s)	70, 766
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	4 cut(s)	231, 759, 911, 1342
MlyI	GAGTC	2 cut(s)	600, 699
MmeI	TCCRAC	2 cut(s)	72, 721
MnlI	CCTC	7 cut(s)	301, 563, 582, 636, 945, 1271, 1336
MseI	TTAA	5 cut(s)	66, 87, 839, 866, 927
MslI	CAYNNNNRTG	1 cut(s)	795
MspA1I	CMGCKG	1 cut(s)	152
MspI	CCGG	2 cut(s)	440, 471
MspR9I	CCNGG	3 cut(s)	356, 983, 1007
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	3 cut(s)	182, 525, 1127
MvaI	CCWGG	3 cut(s)	356, 983, 1007
MwoI	GCNNNNNNNGC	8 cut(s)	122, 131, 140, 149, 506, 815, 995, 1298
NcoI	CCATGG	1 cut(s)	1020
NdeII	GATC	4 cut(s)	70, 154, 766, 880
NlaIII	CATG	6 cut(s)	366, 589, 824, 878, 1024, 1135
NlaIV	GGNNCC	1 cut(s)	1011
NmuCI	GTSAC	4 cut(s)	283, 350, 976, 1180
NspI	RCATGY	1 cut(s)	366
PciI	ACATGT	1 cut(s)	362
PctI	GAATGC	3 cut(s)	182, 525, 1127
PfeI	GAWTC	3 cut(s)	17, 258, 602
PflFI	GACNNNGTC	1 cut(s)	1265
PflMI	CCANNNNNTGG	1 cut(s)	377
PinAI	ACCGGT	2 cut(s)	439, 470
PkrI	GCNGC	9 cut(s)	136, 217, 524, 811, 988, 1000, 1027, 1225, 1300
PleI	GAGTC	2 cut(s)	599, 698
PpsI	GAGTC	2 cut(s)	599, 698
PscI	ACATGT	1 cut(s)	362
PshBI	ATTAAT	1 cut(s)	866
Psp6I	CCWGG	3 cut(s)	354, 981, 1005
PspGI	CCWGG	3 cut(s)	354, 981, 1005
PspN4I	GGNNCC	1 cut(s)	1011
PspPI	GGNCC	1 cut(s)	1010
PstI	CTGCAG	1 cut(s)	136
PstNI	CAGNNNCTG	1 cut(s)	407
PsuI	RGATCY	2 cut(s)	70, 766
PsyI	GACNNNGTC	1 cut(s)	1265
PvuII	CAGCTG	1 cut(s)	152
RsaI	GTAC	1 cut(s)	632
RsaNI	GTAC	1 cut(s)	631
RseI	CAYNNNNRTG	1 cut(s)	795
SaqAI	TTAA	5 cut(s)	66, 87, 839, 866, 927
SatI	GCNGC	9 cut(s)	135, 216, 523, 810, 987, 999, 1026, 1224, 1299
Sau3AI	GATC	4 cut(s)	70, 154, 766, 880
Sau96I	GGNCC	1 cut(s)	1010
ScaI	AGTACT	1 cut(s)	632
SchI	GAGTC	2 cut(s)	600, 699
ScrFI	CCNGG	3 cut(s)	356, 983, 1007
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	5 cut(s)	173, 509, 736, 998, 1201
SfcI	CTRYAG	2 cut(s)	132, 219
SinI	GGWCC	1 cut(s)	1010
SmiMI	CAYNNNNRTG	1 cut(s)	795
SmlI	CTYRAG	1 cut(s)	614
SmoI	CTYRAG	1 cut(s)	614
Sse9I	AATT	4 cut(s)	231, 759, 911, 1342
SsiI	CCGC	3 cut(s)	522, 662, 962
SspI	AATATT	2 cut(s)	267, 774
SspMI	CTAG	1 cut(s)	1070
StyD4I	CCNGG	3 cut(s)	354, 981, 1005
StyI	CCWWGG	2 cut(s)	1020, 1245
TaaI	ACNGT	6 cut(s)	350, 393, 630, 736, 1098, 1186
TaqI	TCGA	4 cut(s)	119, 174, 456, 919
TasI	AATT	4 cut(s)	231, 759, 911, 1342
TatI	WGTACW	1 cut(s)	630
TauI	GCSGC	1 cut(s)	525
TfiI	GAWTC	3 cut(s)	17, 258, 602
Tru1I	TTAA	5 cut(s)	66, 87, 839, 866, 927
Tru9I	TTAA	5 cut(s)	66, 87, 839, 866, 927
TscAI	CASTG	4 cut(s)	210, 681, 739, 1189
TseFI	GTSAC	4 cut(s)	283, 350, 976, 1180
TseI	GCWGC	8 cut(s)	134, 215, 809, 986, 998, 1025, 1223, 1298
Tsp45I	GTSAC	4 cut(s)	283, 350, 976, 1180
TspDTI	ATGAA	5 cut(s)	45, 175, 574, 779, 1120
TspGWI	ACGGA	2 cut(s)	686, 1092
TspRI	CASTG	4 cut(s)	210, 681, 739, 1189
Tth111I	GACNNNGTC	1 cut(s)	1265
Van91I	CCANNNNNTGG	1 cut(s)	377
VpaK11BI	GGWCC	1 cut(s)	1010
VspI	ATTAAT	1 cut(s)	866
XceI	RCATGY	1 cut(s)	366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1243
XspI	CTAG	1 cut(s)	1070
ZrmI	AGTACT	1 cut(s)	632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.