FvH4_3g28870

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
21855395 .. 21861652
6258 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g28870.t3

Sequence Viewer

Length: 1545 bp
ATGGCTGAAGAAAATGAAGGATCATATATGAATGAAAACAATAAGACTACCTTCATTTTCTTTAAGGATATCAGATATGTTTTTAACTTGGACGAATTGGGTTTAGAAATAGCGACAATTGCATTGCCTGCAGCACTAGCATTGACAGCTGATCCAATTGCATCCTTAATCGACACAGCATTCATTGGACAACTAGGTTCAGTGGAGCTTGCTGCAGTAGGAGTATCAATTGCTTTGTTCAATCAAGTATCAAGAATCGCAATATTTCCACTTGTTAGTGTCACAACCTCTTTTGTTGCTGAAGAAGACGCCATTGGAAGAGTAAGACTTGAATCAAATGAGAATATTCACCTGGAGTCAGATTCACCAACAAATGGAGAAACTAAACAGTTGCTACCAGAAACTGATACTGGTAAGAATGCATACAACTCAAAGTTGGTTAATGTAAGCTTCGATACGGTCACAACCGGTCAGAAAAAAAGGTATATCCCATCAGCATCATCAGCAATGGTCATTGGTGGCATTCTTGGATTTATTCAAGCCATATTCCTCATATCTGGAGCAAAACCTCTATTGAGCTTTATGGGAGTCGGTTCAGATTCCCCAATGCTAAAGCCAGCACAACAGTACTTGATGTTGAGGTCGCTCGGTGCTCCTGCAGTTCTTCTTTCATTGGCTATGCAAGGAGTCTTCCGTGGGTTCAAGGATACAAAAACTCCTTTACATGCCACTGTGGCAGGAGATGCAACAAATATAATTTTAGACCCAATTTTTATATTTGTCTTTCGTTTTGGTGTGAACGGCGCAGCTATAGCTCATGTTATATCTCAGTACTTAATGTGCATCATCCTCTTTTTGAGATTAATGGCTCAAGTTGATCTCATACCCCCAAGTGCTAAACATCTCCAATTTGGTCGATTTCTTAAAAATGGGTTTCTATTATTAATGAGGGTTATTGCGGTTACATTCTGTGTGACTCTGGCTGCATCATTGTCTGCACGCCAGGGACCGATAGCCATGGCTGCATTTCAGGTCTGCTTGCAAGTTTGGTTGGCAACATCTCTTTTGGCTGATGGACTAGCTGTTGCAGGACAGGCAATACTTGCAAGTGCATTTGCAAAGAACGACCATGACAAAGCTGCAGTTACTGCTGCCCGAGTATTACAGTTAGGATTGGCTTTGGGGTTGATACTCGCATTCCTGCTCGGAGTGGGGTTGCAGTATGGAGCAAGGTTATTTACAAAAGATGTCAATGTCCTGCATCTTATTAGCATAGGAATACCTTTTGTTGCTGCCACTCAACCTATCAATGCATTGGCATTTGTTTTTGACGGCGTCAACTTTGGAGCCTCTGATTTTGCATATGCAGCACTTTCTATGGTTTTGGTGGCTATTGTCAGCATCATATTCCTGTTTATTCTCTCCTACACAAGTGGATTCATTGGCATCTGGGTTGCACTAACCATCTATATGAGTTTGCGTTCATTTGCTGGATTCTGGAGGATAGGGACAGGAACAGGACCATGGCAATTCCTCAGGACCTAA

Protein Analysis

515

Amino Acids

55.07

Weight (kDa)

7.01

Isoelectric Point (pI)

26.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 158 - 257 2.1e-10 MatE
MatE PF01554 317 - 472 4.3e-12 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 374
AciI CCGC 1 cut(s) 959
AclWI GGATC 2 cut(s) 28, 146
AcuI CTGAAG 2 cut(s) 27, 321
AcyI GRCGYC 2 cut(s) 309, 1335
AfaI GTAC 2 cut(s) 629, 833
AfiI CCNNNNNNNGG 1 cut(s) 374
AgeI ACCGGT 1 cut(s) 467
AgsI TTSAA 4 cut(s) 241, 332, 539, 703
AjnI CCWGG 2 cut(s) 351, 1002
AjuI GAANNNNNNNTTGG 2 cut(s) 297, 329
AluBI AGCT 8 cut(s) 149, 208, 450, 579, 809, 815, 1082, 1139
AluI AGCT 8 cut(s) 149, 208, 450, 579, 809, 815, 1082, 1139
Alw21I GWGCWC 1 cut(s) 655
AlwI GGATC 2 cut(s) 28, 146
AlwNI CAGNNNCTG 2 cut(s) 404, 1148
Ama87I CYCGRG 1 cut(s) 1155
ApeKI GCWGC 9 cut(s) 131, 212, 806, 983, 1022, 1139, 1151, 1292, 1367
AseI ATTAAT 2 cut(s) 863, 944
AsiGI ACCGGT 1 cut(s) 467
AspLEI GCGC 1 cut(s) 806
AspS9I GGNCC 3 cut(s) 1007, 1520, 1539
AsuHPI GGTGA 2 cut(s) 341, 357
AvaI CYCGRG 1 cut(s) 1155
AvaII GGWCC 3 cut(s) 1007, 1520, 1539
AxyI CCTNAGG 1 cut(s) 1535
BbsI GAAGAC 2 cut(s) 312, 682
Bbv12I GWGCWC 1 cut(s) 655
BbvI GCAGC 9 cut(s) 143, 199, 818, 970, 1009, 1126, 1138, 1279, 1379
BccI CCATC 3 cut(s) 499, 1067, 1472
BceAI ACGGC 2 cut(s) 817, 1348
BciT130I CCWGG 2 cut(s) 353, 1004
BciVI GTATCC 1 cut(s) 700
BfaI CTAG 3 cut(s) 137, 194, 1079
BfmI CTRYAG 5 cut(s) 129, 213, 657, 810, 1140
BfuI GTATCC 1 cut(s) 700
BglI GCCNNNNNGGC 1 cut(s) 734
BisI GCNGC 9 cut(s) 132, 213, 807, 984, 1023, 1140, 1152, 1293, 1368
BlsI GCNGC 9 cut(s) 133, 214, 808, 985, 1024, 1141, 1153, 1294, 1369
BmcAI AGTACT 2 cut(s) 629, 833
Bme1390I CCNGG 2 cut(s) 353, 1004
Bme18I GGWCC 3 cut(s) 1007, 1520, 1539
BmeT110I CYCGRG 1 cut(s) 1155
BmgT120I GGNCC 3 cut(s) 1007, 1520, 1539
BmiI GGNNCC 2 cut(s) 1008, 1348
BmrFI CCNGG 2 cut(s) 353, 1004
BmsI GCATC 8 cut(s) 170, 506, 733, 852, 995, 1270, 1410, 1455
BpiI GAAGAC 2 cut(s) 312, 682
BpmI CTGGAG 3 cut(s) 374, 579, 1519
BpuEI CTTGAG 1 cut(s) 855
BsaHI GRCGYC 2 cut(s) 309, 1335
BsaJI CCNNGG 4 cut(s) 694, 1003, 1017, 1523
BsaWI WCCGGW 1 cut(s) 467
BsaXI ACNNNNNCTCC 2 cut(s) 700, 730
Bsc4I CCNNNNNNNGG 1 cut(s) 374
Bse118I RCCGGY 1 cut(s) 467
Bse1I ACTGG 1 cut(s) 415
Bse21I CCTNAGG 1 cut(s) 1535
Bse3DI GCAATG 2 cut(s) 122, 513
BseBI CCWGG 2 cut(s) 353, 1004
BseDI CCNNGG 4 cut(s) 694, 1003, 1017, 1523
BseGI GGATG 2 cut(s) 161, 846
BseLI CCNNNNNNNGG 1 cut(s) 374
BseMI GCAATG 2 cut(s) 122, 513
BseMII CTCAG 1 cut(s) 842
BseNI ACTGG 1 cut(s) 415
BseXI GCAGC 9 cut(s) 143, 199, 818, 970, 1009, 1126, 1138, 1279, 1379
BsgI GTGCAG 1 cut(s) 981
BshTI ACCGGT 1 cut(s) 467
BsiHKAI GWGCWC 1 cut(s) 655
BsiHKCI CYCGRG 1 cut(s) 1155
BsiSI CCGG 1 cut(s) 468
BslFI GGGAC 2 cut(s) 1020, 1522
BslI CCNNNNNNNGG 1 cut(s) 374
BsmFI GGGAC 2 cut(s) 1020, 1522
BsmI GAATGC 4 cut(s) 179, 424, 522, 1196
BsoBI CYCGRG 1 cut(s) 1155
Bsp1286I GDGCHC 1 cut(s) 655
Bsp143I GATC 3 cut(s) 20, 151, 877
Bsp19I CCATGG 2 cut(s) 1017, 1523
BspACI CCGC 1 cut(s) 959
BspCNI CTCAG 1 cut(s) 841
BspLI GGNNCC 2 cut(s) 1008, 1348
BspMAI CTGCAG 4 cut(s) 133, 217, 661, 1144
BspPI GGATC 2 cut(s) 28, 146
BsrDI GCAATG 2 cut(s) 122, 513
BsrFI RCCGGY 1 cut(s) 467
BsrI ACTGG 1 cut(s) 415
BssAI RCCGGY 1 cut(s) 467
BssECI CCNNGG 4 cut(s) 694, 1003, 1017, 1523
BssMI GATC 3 cut(s) 20, 151, 877
BssNI GRCGYC 2 cut(s) 309, 1335
BssT1I CCWWGG 2 cut(s) 1017, 1523
Bst2UI CCWGG 2 cut(s) 353, 1004
Bst4CI ACNGT 5 cut(s) 390, 460, 627, 733, 1167
Bst6I CTCTTC 1 cut(s) 313
BstACI GRCGYC 2 cut(s) 309, 1335
BstAPI GCANNNNNTGC 4 cut(s) 128, 743, 1103, 1148
BstC8I GCNNGC 5 cut(s) 129, 210, 618, 1000, 1040
BstDEI CTNAG 2 cut(s) 828, 1535
BstDSI CCRYGG 3 cut(s) 694, 1017, 1523
BstF5I GGATG 2 cut(s) 161, 846
BstHHI GCGC 1 cut(s) 806
BstKTI GATC 3 cut(s) 23, 154, 880
BstMBI GATC 3 cut(s) 20, 151, 877
BstNI CCWGG 2 cut(s) 353, 1004
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 2 cut(s) 351, 1002
BstSFI CTRYAG 5 cut(s) 129, 213, 657, 810, 1140
BstV1I GCAGC 9 cut(s) 143, 199, 818, 970, 1009, 1126, 1138, 1279, 1379
BstV2I GAAGAC 2 cut(s) 312, 682
Bsu36I CCTNAGG 1 cut(s) 1535
BsuI GTATCC 1 cut(s) 700
BtgI CCRYGG 3 cut(s) 694, 1017, 1523
BtsCI GGATG 2 cut(s) 161, 846
BtsIMutI CAGTG 2 cut(s) 207, 729
Cac8I GCNNGC 5 cut(s) 129, 210, 618, 1000, 1040
CaiI CAGNNNCTG 2 cut(s) 404, 1148
CfoI GCGC 1 cut(s) 806
Cfr10I RCCGGY 1 cut(s) 467
Cfr13I GGNCC 3 cut(s) 1007, 1520, 1539
CseI GACGC 2 cut(s) 317, 1324
Csp6I GTAC 2 cut(s) 628, 832
CspAI ACCGGT 1 cut(s) 467
CviAII CATG 5 cut(s) 725, 818, 1018, 1130, 1524
CviQI GTAC 2 cut(s) 628, 832
DdeI CTNAG 2 cut(s) 828, 1535
DpnI GATC 3 cut(s) 22, 153, 879
DpnII GATC 3 cut(s) 20, 151, 877
Eam1104I CTCTTC 1 cut(s) 313
EarI CTCTTC 1 cut(s) 313
Eco130I CCWWGG 2 cut(s) 1017, 1523
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 3 cut(s) 1007, 1520, 1539
Eco57I CTGAAG 2 cut(s) 27, 321
Eco81I CCTNAGG 1 cut(s) 1535
Eco88I CYCGRG 1 cut(s) 1155
EcoO109I RGGNCCY 1 cut(s) 1539
EcoRII CCWGG 2 cut(s) 351, 1002
EcoRV GATATC 1 cut(s) 70
EcoT14I CCWWGG 2 cut(s) 1017, 1523
EcoT22I ATGCAT 2 cut(s) 424, 1315
ErhI CCWWGG 2 cut(s) 1017, 1523
FaeI CATG 5 cut(s) 728, 821, 1021, 1133, 1527
FalI AAGNNNNNCTT 2 cut(s) 35, 67
FaqI GGGAC 2 cut(s) 1020, 1522
FatI CATG 5 cut(s) 724, 817, 1017, 1129, 1523
FauNDI CATATG 1 cut(s) 1363
Fnu4HI GCNGC 9 cut(s) 132, 213, 807, 984, 1023, 1140, 1152, 1293, 1368
FokI GGATG 2 cut(s) 148, 833
Fsp4HI GCNGC 9 cut(s) 132, 213, 807, 984, 1023, 1140, 1152, 1293, 1368
FspBI CTAG 3 cut(s) 137, 194, 1079
GlaI GCGC 1 cut(s) 805
GluI GCNGC 9 cut(s) 132, 213, 807, 984, 1023, 1140, 1152, 1293, 1368
GsuI CTGGAG 3 cut(s) 374, 579, 1519
HapII CCGG 1 cut(s) 468
HgaI GACGC 2 cut(s) 317, 1324
HhaI GCGC 1 cut(s) 806
Hin1I GRCGYC 2 cut(s) 309, 1335
Hin1II CATG 5 cut(s) 728, 821, 1021, 1133, 1527
Hin6I GCGC 1 cut(s) 804
HinP1I GCGC 1 cut(s) 804
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 1 cut(s) 448
HpaII CCGG 1 cut(s) 468
HphI GGTGA 2 cut(s) 341, 357
Hpy166II GTNNAC 2 cut(s) 799, 1339
Hpy188I TCNGA 6 cut(s) 74, 361, 474, 598, 1208, 1354
Hpy188III TCNNGA 4 cut(s) 252, 558, 1498, 1537
Hpy8I GTNNAC 2 cut(s) 799, 1339
HpyAV CCTTC 2 cut(s) 11, 61
HpyCH4III ACNGT 5 cut(s) 390, 460, 627, 733, 1167
HpyF3I CTNAG 2 cut(s) 828, 1535
Hsp92I GRCGYC 2 cut(s) 309, 1335
Hsp92II CATG 5 cut(s) 728, 821, 1021, 1133, 1527
HspAI GCGC 1 cut(s) 804
Kzo9I GATC 3 cut(s) 20, 151, 877
LmnI GCTCC 5 cut(s) 205, 560, 658, 1226, 1346
Lsp1109I GCAGC 9 cut(s) 143, 199, 818, 970, 1009, 1126, 1138, 1279, 1379
LweI GCATC 8 cut(s) 170, 506, 733, 852, 995, 1270, 1410, 1455
MaeI CTAG 3 cut(s) 137, 194, 1079
MaeIII GTNAC 5 cut(s) 280, 460, 961, 973, 1144
MalI GATC 3 cut(s) 22, 153, 879
MboI GATC 3 cut(s) 20, 151, 877
MboII GAAGA 6 cut(s) 20, 314, 317, 330, 656, 682
MfeI CAATTG 3 cut(s) 117, 156, 228
MhlI GDGCHC 1 cut(s) 655
MluCI AATT 8 cut(s) 95, 117, 156, 228, 756, 768, 908, 1529
MlyI GAGTC 4 cut(s) 365, 597, 696, 970
MnlI CCTC 9 cut(s) 298, 560, 579, 633, 860, 942, 1360, 1494, 1544
Mph1103I ATGCAT 2 cut(s) 424, 1315
MseI TTAA 8 cut(s) 63, 84, 167, 441, 836, 863, 924, 944
MslI CAYNNNNRTG 1 cut(s) 1469
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 1 cut(s) 468
MspR9I CCNGG 2 cut(s) 353, 1004
MunI CAATTG 3 cut(s) 117, 156, 228
Mva1269I GAATGC 4 cut(s) 179, 424, 522, 1196
MvaI CCWGG 2 cut(s) 353, 1004
NcoI CCATGG 2 cut(s) 1017, 1523
NdeI CATATG 1 cut(s) 1363
NdeII GATC 3 cut(s) 20, 151, 877
NlaIII CATG 5 cut(s) 728, 821, 1021, 1133, 1527
NlaIV GGNNCC 2 cut(s) 1008, 1348
NmuCI GTSAC 3 cut(s) 280, 460, 973
NsiI ATGCAT 2 cut(s) 424, 1315
NspI RCATGY 1 cut(s) 728
PctI GAATGC 4 cut(s) 179, 424, 522, 1196
PfeI GAWTC 6 cut(s) 255, 332, 362, 599, 1437, 1494
PflFI GACNNNGTC 1 cut(s) 1334
PflMI CCANNNNNTGG 1 cut(s) 374
PinAI ACCGGT 1 cut(s) 467
PkrI GCNGC 9 cut(s) 133, 214, 808, 985, 1024, 1141, 1153, 1294, 1369
PleI GAGTC 4 cut(s) 364, 596, 695, 970
PpsI GAGTC 4 cut(s) 364, 596, 695, 970
PpuMI RGGWCCY 1 cut(s) 1539
PshBI ATTAAT 2 cut(s) 863, 944
Psp5II RGGWCCY 1 cut(s) 1539
Psp6I CCWGG 2 cut(s) 351, 1002
PspGI CCWGG 2 cut(s) 351, 1002
PspN4I GGNNCC 2 cut(s) 1008, 1348
PspPI GGNCC 3 cut(s) 1007, 1520, 1539
PspPPI RGGWCCY 1 cut(s) 1539
PstI CTGCAG 4 cut(s) 133, 217, 661, 1144
PstNI CAGNNNCTG 2 cut(s) 404, 1148
PsyI GACNNNGTC 1 cut(s) 1334
PvuII CAGCTG 1 cut(s) 149
RsaI GTAC 2 cut(s) 629, 833
RsaNI GTAC 2 cut(s) 628, 832
RseI CAYNNNNRTG 1 cut(s) 1469
SaqAI TTAA 8 cut(s) 63, 84, 167, 441, 836, 863, 924, 944
SatI GCNGC 9 cut(s) 132, 213, 807, 984, 1023, 1140, 1152, 1293, 1368
Sau3AI GATC 3 cut(s) 20, 151, 877
Sau96I GGNCC 3 cut(s) 1007, 1520, 1539
ScaI AGTACT 2 cut(s) 629, 833
SchI GAGTC 4 cut(s) 365, 597, 696, 970
ScrFI CCNGG 2 cut(s) 353, 1004
SduI GDGCHC 1 cut(s) 655
SfaNI GCATC 8 cut(s) 170, 506, 733, 852, 995, 1270, 1410, 1455
SfcI CTRYAG 5 cut(s) 129, 213, 657, 810, 1140
SinI GGWCC 3 cut(s) 1007, 1520, 1539
SmiMI CAYNNNNRTG 1 cut(s) 1469
SmlI CTYRAG 1 cut(s) 870
SmoI CTYRAG 1 cut(s) 870
Sse9I AATT 8 cut(s) 95, 117, 156, 228, 756, 768, 908, 1529
SsiI CCGC 1 cut(s) 959
SspI AATATT 2 cut(s) 264, 346
SspMI CTAG 3 cut(s) 137, 194, 1079
StyD4I CCNGG 2 cut(s) 351, 1002
StyI CCWWGG 2 cut(s) 1017, 1523
TaaI ACNGT 5 cut(s) 390, 460, 627, 733, 1167
TaqI TCGA 3 cut(s) 171, 453, 916
TaqII GACCGA 1 cut(s) 1024
TasI AATT 8 cut(s) 95, 117, 156, 228, 756, 768, 908, 1529
TatI WGTACW 2 cut(s) 627, 831
TfiI GAWTC 6 cut(s) 255, 332, 362, 599, 1437, 1494
Tru1I TTAA 8 cut(s) 63, 84, 167, 441, 836, 863, 924, 944
Tru9I TTAA 8 cut(s) 63, 84, 167, 441, 836, 863, 924, 944
TscAI CASTG 2 cut(s) 207, 736
TseFI GTSAC 3 cut(s) 280, 460, 973
TseI GCWGC 9 cut(s) 131, 212, 806, 983, 1022, 1139, 1151, 1292, 1367
Tsp45I GTSAC 3 cut(s) 280, 460, 973
TspDTI ATGAA 8 cut(s) 30, 43, 44, 48, 172, 660, 1429, 1473
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 2 cut(s) 207, 736
Tth111I GACNNNGTC 1 cut(s) 1334
Van91I CCANNNNNTGG 1 cut(s) 374
VpaK11BI GGWCC 3 cut(s) 1007, 1520, 1539
VspI ATTAAT 2 cut(s) 863, 944
XceI RCATGY 1 cut(s) 728
XspI CTAG 3 cut(s) 137, 194, 1079
ZrmI AGTACT 2 cut(s) 629, 833
Zsp2I ATGCAT 2 cut(s) 424, 1315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.