RH5DG373800

Belongs to the multi antimicrobial extrusion (MATE) (TC 2.A.66.1) family

Basic Information

Type: Sequence Only
Biological Identity
rosa_samantha
Unknown
Physical Location & Seq
Reverse (-)
0 .. 0
1 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG373800.1

Sequence Viewer

Length: 1482 bp
ATGATGGCCAGATATGTTTTTAAGTTGGACAAACTCGGTTTAGAAATAGCGTCGATTGCATTGCCTGCAGCACTGGCTTTGACAGCTGATCCAATCGCATCTCTAATCGACACAGCATTCATTGGACAAATAGGTTCAGTGGAGCTTGCTGCTGTAGGAGTATCAATTGCTTTGTTCAATCAAGTATCAAGAATCGCAATATTTCCACTTGTTAGTGTCACAACCTCTTTTGTTGCTGAAGAAGACACTATTGGTAGAGCGAGACCTGAAGAAAATGAGAACAGTCACCTGGAAACATGTTCACCAACGAATGGGGAAACTAAACAGTTGTTACCAGAAACTGATACTGGTAAGAATGCATACAACTCAAAACCGGTTGATGTAAGCTTCGATATAGTTGCAACCGGTCATAAAAAAAGGTATATCCCATCAGCATCATCAGCAATGGTTATTGGCGGCATTCTTGGATTTATTCAAGCCATATTCCTCATATCTGGAGCAAAACCTCTATTGAACTTCATGGGAGTCAGCTCTGATTCCCCAATGCTCAAGACAGCACAACAGTACTTGATGTTGAGGTCGCTCGGTGCCCCTGCGGTTCTTCTTTCACTGGCTATGCAAGGAGTCTTCCGTGGGTTCAAGGATACAAAAACTCCTTTATTTGCCACTGTGGTCGGAGATGCAACAAATATAATTTTAGATCCAATATTTATATTCGTTTTTCATCTCGGTGTGAATGGTGCAGCTATTGCCCATGTTATATCTCAGTACTTAATGTCAGTCATCCTCTTTTGGAGATTAATAGCTCAAGTTGATCTCTTACCCCCAAGTGTTGAACATCTCCAATTTGGTCGATTTCTTAAAAATGGTTTTCTATTATTGATGAGGGTCATTGCGGTTACATTCTGCGTGACCCTGGCTGCATCATTGGCTGCACGCCAGGGACCAACATCCATGGCTGCATTTCAGGTCTGCTTGCAAGTTTGGTTGGCAACATCTCTTCTAGCTGACGGACTGGCTGTTGCAGGACAGGCAATACTTGCAAGTGCATTTGCAAAGAATGATTATGACAAAGCTGCAGCCGCTGCATCCCGAGTGTTGCAGTTAGGATTGGTTTTGGGGTTGGTGCTTGCATTCATGCTCGGAGTGGGGTTGCAGTATGGAGCAAGGTTATTTACAAAAGATGTCAATGTCCTGCATCTTATTGGCATAGGCATACCATTTGTTGCTGCCACTCAACCCATCAATGCCTTGGCATTTGTTTTTGACGGCGTCAACTTTGGAGGCTCTGATTTTGCCTATGCAGCATTTTCTATGGTTCTGGTGGCTATTATCAGCATCCTATTCCTGTTTATTCTCTCCTACACAAATGGATTCATTGGCATCTGGGTTGCTTTGTCCATCTATATGAGTCTTCGTGCGTTTGCTGGATTTTGGAGGATAGGGACAGGAACAGGACCTTGGCAATTCCTCAGGACCTAA

Protein Analysis

493

Amino Acids

52.63

Weight (kDa)

8.34

Isoelectric Point (pI)

23.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MatE PF01554 137 - 236 1.8e-11 MatE
MatE PF01554 295 - 451 2.6e-11 MatE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 587
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 4 cut(s) 456, 596, 896, 1083
AclWI GGATC 2 cut(s) 83, 695
AcoI YGGCCR 1 cut(s) 6
AcuI CTGAAG 2 cut(s) 258, 288
AcyI GRCGYC 1 cut(s) 1272
AfaI GTAC 2 cut(s) 566, 770
AfiI CCNNNNNNNGG 1 cut(s) 311
AflIII ACRYGT 1 cut(s) 296
AgeI ACCGGT 2 cut(s) 373, 404
AgsI TTSAA 5 cut(s) 178, 476, 514, 640, 836
AjnI CCWGG 3 cut(s) 288, 915, 939
AjuI GAANNNNNNNTTGG 4 cut(s) 234, 266, 1444, 1476
AluBI AGCT 8 cut(s) 86, 145, 387, 531, 746, 806, 1007, 1076
AluI AGCT 8 cut(s) 86, 145, 387, 531, 746, 806, 1007, 1076
Alw26I GTCTC 1 cut(s) 256
AlwI GGATC 2 cut(s) 83, 695
AlwNI CAGNNNCTG 2 cut(s) 341, 1085
Ama87I CYCGRG 1 cut(s) 1092
AoxI GGCC 1 cut(s) 6
AseI ATTAAT 1 cut(s) 800
AsiGI ACCGGT 2 cut(s) 373, 404
AspS9I GGNCC 3 cut(s) 944, 1457, 1476
AsuHPI GGTGA 2 cut(s) 278, 294
AvaI CYCGRG 1 cut(s) 1092
AvaII GGWCC 3 cut(s) 944, 1457, 1476
AxyI CCTNAGG 1 cut(s) 1472
BaeGI GKGCMC 1 cut(s) 592
BalI TGGCCA 1 cut(s) 8
BanI GGYRCC 1 cut(s) 587
BbsI GAAGAC 3 cut(s) 249, 619, 1406
BccI CCATC 3 cut(s) 436, 1250, 1409
BceAI ACGGC 1 cut(s) 1285
BcgI CGANNNNNNTGC 4 cut(s) 43, 77, 380, 414
BciT130I CCWGG 3 cut(s) 290, 917, 941
BciVI GTATCC 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 256
BfaI CTAG 1 cut(s) 1004
BfmI CTRYAG 3 cut(s) 66, 153, 1077
BfuI GTATCC 1 cut(s) 637
BmcAI AGTACT 2 cut(s) 566, 770
Bme1390I CCNGG 3 cut(s) 290, 917, 941
Bme18I GGWCC 3 cut(s) 944, 1457, 1476
BmeT110I CYCGRG 1 cut(s) 1092
BmgT120I GGNCC 3 cut(s) 944, 1457, 1476
BmiI GGNNCC 2 cut(s) 589, 945
BmrFI CCNGG 3 cut(s) 290, 917, 941
BmsI GCATC 8 cut(s) 107, 443, 670, 932, 1097, 1207, 1347, 1392
BpiI GAAGAC 3 cut(s) 249, 619, 1406
BpmI CTGGAG 1 cut(s) 516
BpuEI CTTGAG 2 cut(s) 533, 792
BsaHI GRCGYC 1 cut(s) 1272
BsaI GGTCTC 1 cut(s) 256
BsaJI CCNNGG 6 cut(s) 631, 915, 940, 954, 1251, 1460
BsaWI WCCGGW 2 cut(s) 373, 404
BsaXI ACNNNNNCTCC 2 cut(s) 637, 667
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse118I RCCGGY 2 cut(s) 373, 404
Bse1I ACTGG 4 cut(s) 78, 352, 615, 1020
Bse21I CCTNAGG 1 cut(s) 1472
Bse3DI GCAATG 3 cut(s) 59, 450, 891
BseBI CCWGG 3 cut(s) 290, 917, 941
BseDI CCNNGG 6 cut(s) 631, 915, 940, 954, 1251, 1460
BseGI GGATG 4 cut(s) 783, 950, 1088, 1338
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 3 cut(s) 59, 450, 891
BseMII CTCAG 1 cut(s) 779
BseNI ACTGG 4 cut(s) 78, 352, 615, 1020
BseSI GKGCMC 1 cut(s) 592
BsgI GTGCAG 2 cut(s) 762, 918
BshFI GGCC 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 587
BshTI ACCGGT 2 cut(s) 373, 404
BsiHKCI CYCGRG 1 cut(s) 1092
BsiSI CCGG 2 cut(s) 374, 405
BslFI GGGAC 2 cut(s) 957, 1459
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 1 cut(s) 256
BsmFI GGGAC 2 cut(s) 957, 1459
BsmI GAATGC 4 cut(s) 116, 361, 459, 1133
BsnI GGCC 1 cut(s) 8
Bso31I GGTCTC 1 cut(s) 256
BsoBI CYCGRG 1 cut(s) 1092
Bsp1286I GDGCHC 1 cut(s) 592
Bsp143I GATC 3 cut(s) 88, 700, 814
Bsp19I CCATGG 1 cut(s) 954
BspACI CCGC 4 cut(s) 456, 596, 896, 1083
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 589, 945
BspMAI CTGCAG 2 cut(s) 70, 1081
BspPI GGATC 2 cut(s) 83, 695
BspT107I GGYRCC 1 cut(s) 587
BspTNI GGTCTC 1 cut(s) 256
BsrDI GCAATG 3 cut(s) 59, 450, 891
BsrFI RCCGGY 2 cut(s) 373, 404
BsrI ACTGG 4 cut(s) 78, 352, 615, 1020
BssAI RCCGGY 2 cut(s) 373, 404
BssECI CCNNGG 6 cut(s) 631, 915, 940, 954, 1251, 1460
BssMI GATC 3 cut(s) 88, 700, 814
BssNI GRCGYC 1 cut(s) 1272
BssT1I CCWWGG 3 cut(s) 954, 1251, 1460
Bst2UI CCWGG 3 cut(s) 290, 917, 941
Bst4CI ACNGT 4 cut(s) 284, 327, 564, 670
Bst6I CTCTTC 1 cut(s) 1005
BstACI GRCGYC 1 cut(s) 1272
BstAPI GCANNNNNTGC 4 cut(s) 65, 749, 1040, 1085
BstC8I GCNNGC 5 cut(s) 66, 147, 937, 977, 1131
BstDEI CTNAG 2 cut(s) 765, 1472
BstDSI CCRYGG 2 cut(s) 631, 954
BstF5I GGATG 4 cut(s) 783, 950, 1088, 1338
BstKTI GATC 3 cut(s) 91, 703, 817
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 3 cut(s) 88, 700, 814
BstNI CCWGG 3 cut(s) 290, 917, 941
BstNSI RCATGY 1 cut(s) 300
BstSCI CCNGG 3 cut(s) 288, 915, 939
BstSFI CTRYAG 3 cut(s) 66, 153, 1077
BstSLI GKGCMC 1 cut(s) 592
BstV2I GAAGAC 3 cut(s) 249, 619, 1406
BstX2I RGATCY 1 cut(s) 700
BstYI RGATCY 1 cut(s) 700
Bsu36I CCTNAGG 1 cut(s) 1472
BsuI GTATCC 1 cut(s) 637
BsuRI GGCC 1 cut(s) 8
BtgI CCRYGG 2 cut(s) 631, 954
BtsCI GGATG 4 cut(s) 783, 950, 1088, 1338
BtsIMutI CAGTG 4 cut(s) 71, 144, 608, 666
Cac8I GCNNGC 5 cut(s) 66, 147, 937, 977, 1131
CaiI CAGNNNCTG 2 cut(s) 341, 1085
Cfr10I RCCGGY 2 cut(s) 373, 404
Cfr13I GGNCC 3 cut(s) 944, 1457, 1476
CseI GACGC 2 cut(s) 39, 1261
Csp6I GTAC 2 cut(s) 565, 769
CspAI ACCGGT 2 cut(s) 373, 404
CviAII CATG 5 cut(s) 297, 520, 755, 955, 1138
CviQI GTAC 2 cut(s) 565, 769
DdeI CTNAG 2 cut(s) 765, 1472
DpnI GATC 3 cut(s) 90, 702, 816
DpnII GATC 3 cut(s) 88, 700, 814
EaeI YGGCCR 1 cut(s) 6
Eam1104I CTCTTC 1 cut(s) 1005
EarI CTCTTC 1 cut(s) 1005
Eco130I CCWWGG 3 cut(s) 954, 1251, 1460
Eco31I GGTCTC 1 cut(s) 256
Eco47I GGWCC 3 cut(s) 944, 1457, 1476
Eco57I CTGAAG 2 cut(s) 258, 288
Eco81I CCTNAGG 1 cut(s) 1472
Eco88I CYCGRG 1 cut(s) 1092
EcoO109I RGGNCCY 2 cut(s) 1457, 1476
EcoRII CCWGG 3 cut(s) 288, 915, 939
EcoT14I CCWWGG 3 cut(s) 954, 1251, 1460
EcoT22I ATGCAT 1 cut(s) 361
ErhI CCWWGG 3 cut(s) 954, 1251, 1460
FaeI CATG 5 cut(s) 300, 523, 758, 958, 1141
FaqI GGGAC 2 cut(s) 957, 1459
FatI CATG 5 cut(s) 296, 519, 754, 954, 1137
FokI GGATG 4 cut(s) 770, 937, 1075, 1325
FspBI CTAG 1 cut(s) 1004
GsuI CTGGAG 1 cut(s) 516
HaeIII GGCC 1 cut(s) 8
HapII CCGG 2 cut(s) 374, 405
HgaI GACGC 2 cut(s) 39, 1261
Hin1I GRCGYC 1 cut(s) 1272
Hin1II CATG 5 cut(s) 300, 523, 758, 958, 1141
HincII GTYRAC 1 cut(s) 1276
HindII GTYRAC 1 cut(s) 1276
HindIII AAGCTT 1 cut(s) 385
HinfI GANTC 6 cut(s) 192, 525, 536, 624, 1374, 1411
HpaII CCGG 2 cut(s) 374, 405
HphI GGTGA 2 cut(s) 278, 294
Hpy166II GTNNAC 2 cut(s) 302, 1276
Hpy188I TCNGA 4 cut(s) 535, 677, 1145, 1291
Hpy188III TCNNGA 5 cut(s) 189, 495, 550, 1092, 1474
Hpy8I GTNNAC 2 cut(s) 302, 1276
Hpy99I CGWCG 1 cut(s) 55
HpyCH4III ACNGT 4 cut(s) 284, 327, 564, 670
HpyF3I CTNAG 2 cut(s) 765, 1472
Hsp92I GRCGYC 1 cut(s) 1272
Hsp92II CATG 5 cut(s) 300, 523, 758, 958, 1141
Kzo9I GATC 3 cut(s) 88, 700, 814
LmnI GCTCC 3 cut(s) 142, 497, 1163
LweI GCATC 8 cut(s) 107, 443, 670, 932, 1097, 1207, 1347, 1392
MaeI CTAG 1 cut(s) 1004
MaeIII GTNAC 5 cut(s) 217, 284, 330, 898, 910
MalI GATC 3 cut(s) 90, 702, 816
MboI GATC 3 cut(s) 88, 700, 814
MboII GAAGA 7 cut(s) 251, 254, 281, 593, 619, 992, 1406
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 700
MhlI GDGCHC 1 cut(s) 592
MlsI TGGCCA 1 cut(s) 8
MluCI AATT 4 cut(s) 165, 693, 845, 1466
MluNI TGGCCA 1 cut(s) 8
MlyI GAGTC 3 cut(s) 534, 633, 1420
MmeI TCCRAC 2 cut(s) 6, 655
MnlI CCTC 9 cut(s) 235, 497, 516, 570, 797, 879, 1277, 1431, 1481
Mox20I TGGCCA 1 cut(s) 8
Mph1103I ATGCAT 1 cut(s) 361
MscI TGGCCA 1 cut(s) 8
MseI TTAA 4 cut(s) 21, 773, 800, 861
MslI CAYNNNNRTG 2 cut(s) 729, 1406
Msp20I TGGCCA 1 cut(s) 8
MspA1I CMGCKG 2 cut(s) 86, 1085
MspI CCGG 2 cut(s) 374, 405
MspR9I CCNGG 3 cut(s) 290, 917, 941
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 4 cut(s) 116, 361, 459, 1133
MvaI CCWGG 3 cut(s) 290, 917, 941
NcoI CCATGG 1 cut(s) 954
NdeII GATC 3 cut(s) 88, 700, 814
NlaIII CATG 5 cut(s) 300, 523, 758, 958, 1141
NlaIV GGNNCC 2 cut(s) 589, 945
NmuCI GTSAC 3 cut(s) 217, 284, 910
NsiI ATGCAT 1 cut(s) 361
NspI RCATGY 1 cut(s) 300
PciI ACATGT 1 cut(s) 296
PctI GAATGC 4 cut(s) 116, 361, 459, 1133
PfeI GAWTC 3 cut(s) 192, 536, 1374
PflFI GACNNNGTC 1 cut(s) 1271
PflMI CCANNNNNTGG 1 cut(s) 311
PinAI ACCGGT 2 cut(s) 373, 404
PleI GAGTC 3 cut(s) 533, 632, 1419
PpsI GAGTC 3 cut(s) 533, 632, 1419
PpuMI RGGWCCY 2 cut(s) 1457, 1476
PscI ACATGT 1 cut(s) 296
PshBI ATTAAT 1 cut(s) 800
Psp5II RGGWCCY 2 cut(s) 1457, 1476
Psp6I CCWGG 3 cut(s) 288, 915, 939
PspGI CCWGG 3 cut(s) 288, 915, 939
PspN4I GGNNCC 2 cut(s) 589, 945
PspPI GGNCC 3 cut(s) 944, 1457, 1476
PspPPI RGGWCCY 2 cut(s) 1457, 1476
PstI CTGCAG 2 cut(s) 70, 1081
PstNI CAGNNNCTG 2 cut(s) 341, 1085
PsuI RGATCY 1 cut(s) 700
PsyI GACNNNGTC 1 cut(s) 1271
PvuII CAGCTG 1 cut(s) 86
RsaI GTAC 2 cut(s) 566, 770
RsaNI GTAC 2 cut(s) 565, 769
RseI CAYNNNNRTG 2 cut(s) 729, 1406
SaqAI TTAA 4 cut(s) 21, 773, 800, 861
Sau3AI GATC 3 cut(s) 88, 700, 814
Sau96I GGNCC 3 cut(s) 944, 1457, 1476
ScaI AGTACT 2 cut(s) 566, 770
SchI GAGTC 3 cut(s) 534, 633, 1420
ScrFI CCNGG 3 cut(s) 290, 917, 941
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 8 cut(s) 107, 443, 670, 932, 1097, 1207, 1347, 1392
SfcI CTRYAG 3 cut(s) 66, 153, 1077
SinI GGWCC 3 cut(s) 944, 1457, 1476
SmiMI CAYNNNNRTG 2 cut(s) 729, 1406
SmlI CTYRAG 2 cut(s) 548, 807
SmoI CTYRAG 2 cut(s) 548, 807
Sse9I AATT 4 cut(s) 165, 693, 845, 1466
SsiI CCGC 4 cut(s) 456, 596, 896, 1083
SspI AATATT 2 cut(s) 201, 708
SspMI CTAG 1 cut(s) 1004
StyD4I CCNGG 3 cut(s) 288, 915, 939
StyI CCWWGG 3 cut(s) 954, 1251, 1460
TaaI ACNGT 4 cut(s) 284, 327, 564, 670
TaqI TCGA 4 cut(s) 53, 108, 390, 853
TasI AATT 4 cut(s) 165, 693, 845, 1466
TatI WGTACW 2 cut(s) 564, 768
TauI GCSGC 2 cut(s) 459, 1085
TfiI GAWTC 3 cut(s) 192, 536, 1374
Tru1I TTAA 4 cut(s) 21, 773, 800, 861
Tru9I TTAA 4 cut(s) 21, 773, 800, 861
TscAI CASTG 4 cut(s) 78, 144, 615, 673
TseFI GTSAC 3 cut(s) 217, 284, 910
Tsp45I GTSAC 3 cut(s) 217, 284, 910
TspDTI ATGAA 5 cut(s) 109, 508, 713, 1126, 1366
TspGWI ACGGA 2 cut(s) 620, 1026
TspRI CASTG 4 cut(s) 78, 144, 615, 673
Tth111I GACNNNGTC 1 cut(s) 1271
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 3 cut(s) 944, 1457, 1476
VspI ATTAAT 1 cut(s) 800
XceI RCATGY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 1249
XspI CTAG 1 cut(s) 1004
ZrmI AGTACT 2 cut(s) 566, 770
Zsp2I ATGCAT 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.