Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0001107

Physical Location & Seq

Genomic Coordinates Reverse (-)

50451705 .. 50459872

Gene Structure 8168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG383800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTTTAAAGGTTCAGTGGAGCTTGCTGCTGTAGGAGTATCAATTGCTTTGTTCAATCAAGTATCAAGAATCGCAATATTTCCACTTGTTAGTGTCACAACCTCTTTTGTTGCTGAAGAAGACACTATTGGTAGAGCGAGACCTGAAGAAAATGAGAACAGTCACCTGGAAACATGTTCACCAACGAATGGGGAAACTAAACAGTTGTTACCAGAAACTGATACTGGTAAGAATGCATACAACTCAAAACAGGTTGATGTAAGCTTCGATGTAGTTGCAACCGGTCATAAAAAAAGGTATATCCCATCAGCATCATCAGCAATGGTTATTGGCGGCATTCTTGGATTTATTCAAGCCATATTCCTCATATCTGGAGCAAAACCTCTATTGAACTTCATGGGAGTCAGCTCTGATTCCCCAATGCTCAAGCCAGCACAACAGTACTTGATGTTGAGGTCGCTCGGTGCTCCTGCGGTTCTTCTTTCACTGGCTATGCAAGGAGTCTTCCGTGGGTTCAAGGATACAAAAACTCCTTTATTTGCCACTGTGGTCGGAGATGCAACAAATATAATTTTAGATCCAATATTTATATTCGTTTTTCATCTCGGTGTGAATGGTGCAGCTATCGCCCATGTTATATCTCAGTACTTAATGTCAGTCATCCTCTTTTGGAGTTTAATAGCTCAAGTTGATCTCTTACCCCCAAGTGTTGAACATCTCCAATTTGGTCGATTTCTTAAAAATGGTTTTCTATTATTGATGAGGGTCATTGCGGTTACATTCTGCGTGACCCTGGCTGCATCATTGGCTGCACGCCAGGGACCAACATCCATGGCTGCATTTCAGGTCTGCTTGCAAGTTTGGTTGGCAACATCTCTTCTAGCTGACGGACTGGCTGTTGCAGGACAGGCAATACTTGCAAGTGCATTTGCAAAGAATGATTATGACAAAGCTGCAGCCGCTGCATCCCGAGTGTTGCAGTTAGGATTGGTTTTGGGGTTGGTGCTTGCATTCATGCTCGGAGTGGGGTTGCAGTATGGAGCAAGGTTATTTACAAAAGATGTCAATGTCCTGCATCTTATTGGCATAGGCATACCATTTGTTGCTGCCACTCAACCCATCAATGCCTTGGCATTTGTTTTTGACGGCGTCAACTTTGGAGGCTCTGATTTTGCCTATGCAGCATTTTCTATGGCAAGTCTTCTGCCCCCTTTCTTGCACTACGTACAATTTATGATGTGCACTCATCTATTTTCAAAGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0006810 GO:0006811 GO:0006820 GO:0006842 GO:0006855 GO:0008150 GO:0008509 GO:0008514 GO:0010035 GO:0010038 GO:0010044 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0022857 GO:0034220 GO:0035674 GO:0042221 GO:0042493 GO:0042891 GO:0042895 GO:0046942 GO:0046943 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0098656 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

421

Amino Acids

44.95

Weight (kDa)

7.71

Isoelectric Point (pI)

28.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	96 - 195	2.5e-11	MatE
MatE	PF01554	254 - 398	1.1e-11	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G51340 AT1G51340 AT1G51340 AT1G51340 AT1G51340
fragaria_vesca	FvH4_3g28870 FvH4_3g28870 FvH4_3g28870 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370 FvH4_6g23370
malus_domestica	MD03G1175500.v1.1 MD11G1193400.v1.1
prunus_persica	Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G248800_v2.0.a1 Prupe.4G250300_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1 Prupe.7G066100_v2.0.a1
pyrus_communis	pycom03g13300 pycom11g16890
rosa_chinensis	RchiOBHm_Chr3g0481351 RchiOBHm_Chr5g0052011
rosa_laevigata	RLG00000023404 RLG00000034848
rosa_multiflora	Rmu_sc0005445.1_g000002 Rmu_sc0018231.1_g000001 Rmu_ssc0000466.1_g000012
rosa_roxburghii	Rroxscaffold_1G00027790 Rroxscaffold_6G00400490
rosa_rugosa	Rorug03G0191300 Rorug03G0191400 Rorug05G0275600
rosa_samantha	Rh3AG242200 Rh3BG277400 Rh3CG272400 Rh3DG269200 Rh5AG347400 Rh5BG358300 Rh5CG383800 Rh5DG373800
rosa_wichuraiana	Rw0G002690 Rw3G021650 Rw5G032840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	188
AciI	CCGC	4 cut(s)	333, 473, 773, 960
AclWI	GGATC	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	135, 165
AcyI	GRCGYC	1 cut(s)	1149
AfaI	GTAC	3 cut(s)	443, 647, 1227
AfiI	CCNNNNNNNGG	1 cut(s)	188
AflIII	ACRYGT	1 cut(s)	173
AgeI	ACCGGT	1 cut(s)	281
AgsI	TTSAA	6 cut(s)	55, 353, 391, 517, 713, 1257
AjnI	CCWGG	3 cut(s)	165, 792, 816
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	7 cut(s)	22, 264, 408, 623, 683, 884, 953
AluI	AGCT	7 cut(s)	22, 264, 408, 623, 683, 884, 953
Alw21I	GWGCWC	2 cut(s)	469, 1244
Alw26I	GTCTC	1 cut(s)	133
Alw44I	GTGCAC	1 cut(s)	1240
AlwI	GGATC	1 cut(s)	572
AlwNI	CAGNNNCTG	2 cut(s)	218, 962
Ama87I	CYCGRG	1 cut(s)	969
ApaLI	GTGCAC	1 cut(s)	1240
AsiGI	ACCGGT	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	821
AsuHPI	GGTGA	2 cut(s)	155, 171
AvaI	CYCGRG	1 cut(s)	969
AvaII	GGWCC	1 cut(s)	821
BaeGI	GKGCMC	1 cut(s)	1244
BbsI	GAAGAC	3 cut(s)	126, 496, 1193
Bbv12I	GWGCWC	2 cut(s)	469, 1244
BccI	CCATC	2 cut(s)	313, 1127
BceAI	ACGGC	1 cut(s)	1162
BcgI	CGANNNNNNTGC	2 cut(s)	257, 291
BciT130I	CCWGG	3 cut(s)	167, 794, 818
BciVI	GTATCC	1 cut(s)	514
BcoDI	GTCTC	1 cut(s)	133
BfaI	CTAG	1 cut(s)	881
BfmI	CTRYAG	2 cut(s)	30, 954
BfuI	GTATCC	1 cut(s)	514
BmcAI	AGTACT	2 cut(s)	443, 647
Bme1390I	CCNGG	3 cut(s)	167, 794, 818
Bme18I	GGWCC	1 cut(s)	821
BmeT110I	CYCGRG	1 cut(s)	969
BmgT120I	GGNCC	1 cut(s)	821
BmiI	GGNNCC	1 cut(s)	822
BmrFI	CCNGG	3 cut(s)	167, 794, 818
BmsI	GCATC	5 cut(s)	320, 547, 809, 974, 1084
BpiI	GAAGAC	3 cut(s)	126, 496, 1193
BpmI	CTGGAG	1 cut(s)	393
BpuEI	CTTGAG	2 cut(s)	410, 669
BsaAI	YACGTR	1 cut(s)	1225
BsaHI	GRCGYC	1 cut(s)	1149
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	5 cut(s)	508, 792, 817, 831, 1128
BsaWI	WCCGGW	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	514, 544
Bsc4I	CCNNNNNNNGG	1 cut(s)	188
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	229, 492, 897
Bse3DI	GCAATG	2 cut(s)	327, 768
BseBI	CCWGG	3 cut(s)	167, 794, 818
BseDI	CCNNGG	5 cut(s)	508, 792, 817, 831, 1128
BseGI	GGATG	3 cut(s)	660, 827, 965
BseLI	CCNNNNNNNGG	1 cut(s)	188
BseMI	GCAATG	2 cut(s)	327, 768
BseMII	CTCAG	1 cut(s)	656
BseNI	ACTGG	3 cut(s)	229, 492, 897
BseSI	GKGCMC	1 cut(s)	1244
BsgI	GTGCAG	2 cut(s)	639, 795
BshTI	ACCGGT	1 cut(s)	281
BsiHKAI	GWGCWC	2 cut(s)	469, 1244
BsiHKCI	CYCGRG	1 cut(s)	969
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	834
BslI	CCNNNNNNNGG	1 cut(s)	188
BsmAI	GTCTC	1 cut(s)	133
BsmFI	GGGAC	1 cut(s)	834
BsmI	GAATGC	3 cut(s)	238, 336, 1010
Bso31I	GGTCTC	1 cut(s)	133
BsoBI	CYCGRG	1 cut(s)	969
Bsp1286I	GDGCHC	2 cut(s)	469, 1244
Bsp143I	GATC	2 cut(s)	577, 691
Bsp19I	CCATGG	1 cut(s)	831
BspACI	CCGC	4 cut(s)	333, 473, 773, 960
BspCNI	CTCAG	1 cut(s)	655
BspLI	GGNNCC	1 cut(s)	822
BspMAI	CTGCAG	1 cut(s)	958
BspPI	GGATC	1 cut(s)	572
BspTNI	GGTCTC	1 cut(s)	133
BsrDI	GCAATG	2 cut(s)	327, 768
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	229, 492, 897
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	5 cut(s)	508, 792, 817, 831, 1128
BssMI	GATC	2 cut(s)	577, 691
BssNI	GRCGYC	1 cut(s)	1149
BssT1I	CCWWGG	2 cut(s)	831, 1128
Bst2UI	CCWGG	3 cut(s)	167, 794, 818
Bst4CI	ACNGT	4 cut(s)	161, 204, 441, 547
Bst6I	CTCTTC	1 cut(s)	882
BstACI	GRCGYC	1 cut(s)	1149
BstAPI	GCANNNNNTGC	2 cut(s)	917, 962
BstBAI	YACGTR	1 cut(s)	1225
BstC8I	GCNNGC	5 cut(s)	24, 432, 814, 854, 1008
BstDEI	CTNAG	1 cut(s)	642
BstDSI	CCRYGG	2 cut(s)	508, 831
BstF5I	GGATG	3 cut(s)	660, 827, 965
BstKTI	GATC	2 cut(s)	580, 694
BstMAI	GTCTC	1 cut(s)	133
BstMBI	GATC	2 cut(s)	577, 691
BstMWI	GCNNNNNNNGC	8 cut(s)	317, 626, 806, 908, 917, 959, 962, 1181
BstNI	CCWGG	3 cut(s)	167, 794, 818
BstNSI	RCATGY	1 cut(s)	177
BstSCI	CCNGG	3 cut(s)	165, 792, 816
BstSFI	CTRYAG	2 cut(s)	30, 954
BstSLI	GKGCMC	1 cut(s)	1244
BstSNI	TACGTA	1 cut(s)	1225
BstV2I	GAAGAC	3 cut(s)	126, 496, 1193
BstX2I	RGATCY	1 cut(s)	577
BstYI	RGATCY	1 cut(s)	577
BsuI	GTATCC	1 cut(s)	514
BtgI	CCRYGG	2 cut(s)	508, 831
BtsCI	GGATG	3 cut(s)	660, 827, 965
BtsIMutI	CAGTG	3 cut(s)	21, 485, 543
Cac8I	GCNNGC	5 cut(s)	24, 432, 814, 854, 1008
CaiI	CAGNNNCTG	2 cut(s)	218, 962
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	1 cut(s)	821
CseI	GACGC	1 cut(s)	1138
Csp6I	GTAC	3 cut(s)	442, 646, 1226
CspAI	ACCGGT	1 cut(s)	281
CviAII	CATG	5 cut(s)	174, 397, 632, 832, 1015
CviQI	GTAC	3 cut(s)	442, 646, 1226
DdeI	CTNAG	1 cut(s)	642
DpnI	GATC	2 cut(s)	579, 693
DpnII	GATC	2 cut(s)	577, 691
DraI	TTTAAA	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	882
EarI	CTCTTC	1 cut(s)	882
Eco105I	TACGTA	1 cut(s)	1225
Eco130I	CCWWGG	2 cut(s)	831, 1128
Eco31I	GGTCTC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	821
Eco57I	CTGAAG	2 cut(s)	135, 165
Eco88I	CYCGRG	1 cut(s)	969
EcoRII	CCWGG	3 cut(s)	165, 792, 816
EcoT14I	CCWWGG	2 cut(s)	831, 1128
EcoT22I	ATGCAT	1 cut(s)	238
ErhI	CCWWGG	2 cut(s)	831, 1128
FaeI	CATG	5 cut(s)	177, 400, 635, 835, 1018
FaqI	GGGAC	1 cut(s)	834
FatI	CATG	5 cut(s)	173, 396, 631, 831, 1014
FokI	GGATG	3 cut(s)	647, 814, 952
FspBI	CTAG	1 cut(s)	881
GsuI	CTGGAG	1 cut(s)	393
HapII	CCGG	1 cut(s)	282
HgaI	GACGC	1 cut(s)	1138
Hin1I	GRCGYC	1 cut(s)	1149
Hin1II	CATG	5 cut(s)	177, 400, 635, 835, 1018
HincII	GTYRAC	1 cut(s)	1153
HindII	GTYRAC	1 cut(s)	1153
HindIII	AAGCTT	1 cut(s)	262
HinfI	GANTC	4 cut(s)	69, 402, 413, 501
HpaII	CCGG	1 cut(s)	282
HphI	GGTGA	2 cut(s)	155, 171
Hpy166II	GTNNAC	3 cut(s)	179, 1153, 1242
Hpy188I	TCNGA	4 cut(s)	412, 554, 1022, 1168
Hpy188III	TCNNGA	3 cut(s)	66, 372, 969
Hpy8I	GTNNAC	3 cut(s)	179, 1153, 1242
HpyCH4III	ACNGT	4 cut(s)	161, 204, 441, 547
HpyCH4IV	ACGT	1 cut(s)	1224
HpyF10VI	GCNNNNNNNGC	8 cut(s)	317, 626, 806, 908, 917, 959, 962, 1181
HpyF3I	CTNAG	1 cut(s)	642
HpySE526I	ACGT	1 cut(s)	1224
Hsp92I	GRCGYC	1 cut(s)	1149
Hsp92II	CATG	5 cut(s)	177, 400, 635, 835, 1018
Kzo9I	GATC	2 cut(s)	577, 691
LmnI	GCTCC	4 cut(s)	19, 374, 472, 1040
LweI	GCATC	5 cut(s)	320, 547, 809, 974, 1084
MaeI	CTAG	1 cut(s)	881
MaeII	ACGT	1 cut(s)	1224
MaeIII	GTNAC	5 cut(s)	94, 161, 207, 775, 787
MalI	GATC	2 cut(s)	579, 693
MboI	GATC	2 cut(s)	577, 691
MboII	GAAGA	7 cut(s)	128, 131, 158, 470, 496, 869, 1193
MfeI	CAATTG	1 cut(s)	42
MflI	RGATCY	1 cut(s)	577
MhlI	GDGCHC	2 cut(s)	469, 1244
MluCI	AATT	4 cut(s)	42, 570, 722, 1229
MlyI	GAGTC	2 cut(s)	411, 510
MmeI	TCCRAC	1 cut(s)	532
MnlI	CCTC	7 cut(s)	112, 374, 393, 447, 674, 756, 1154
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	5 cut(s)	6, 650, 677, 738, 1264
MslI	CAYNNNNRTG	1 cut(s)	606
MspA1I	CMGCKG	1 cut(s)	962
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	3 cut(s)	167, 794, 818
MunI	CAATTG	1 cut(s)	42
Mva1269I	GAATGC	3 cut(s)	238, 336, 1010
MvaI	CCWGG	3 cut(s)	167, 794, 818
MwoI	GCNNNNNNNGC	8 cut(s)	317, 626, 806, 908, 917, 959, 962, 1181
NcoI	CCATGG	1 cut(s)	831
NdeII	GATC	2 cut(s)	577, 691
NlaIII	CATG	5 cut(s)	177, 400, 635, 835, 1018
NlaIV	GGNNCC	1 cut(s)	822
NmuCI	GTSAC	3 cut(s)	94, 161, 787
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	177
PciI	ACATGT	1 cut(s)	173
PctI	GAATGC	3 cut(s)	238, 336, 1010
PfeI	GAWTC	2 cut(s)	69, 413
PflFI	GACNNNGTC	1 cut(s)	1148
PflMI	CCANNNNNTGG	1 cut(s)	188
PinAI	ACCGGT	1 cut(s)	281
PleI	GAGTC	2 cut(s)	410, 509
PpsI	GAGTC	2 cut(s)	410, 509
Ppu21I	YACGTR	1 cut(s)	1225
PscI	ACATGT	1 cut(s)	173
Psp6I	CCWGG	3 cut(s)	165, 792, 816
PspGI	CCWGG	3 cut(s)	165, 792, 816
PspN4I	GGNNCC	1 cut(s)	822
PspPI	GGNCC	1 cut(s)	821
PstI	CTGCAG	1 cut(s)	958
PstNI	CAGNNNCTG	2 cut(s)	218, 962
PsuI	RGATCY	1 cut(s)	577
PsyI	GACNNNGTC	1 cut(s)	1148
RsaI	GTAC	3 cut(s)	443, 647, 1227
RsaNI	GTAC	3 cut(s)	442, 646, 1226
RseI	CAYNNNNRTG	1 cut(s)	606
SaqAI	TTAA	5 cut(s)	6, 650, 677, 738, 1264
Sau3AI	GATC	2 cut(s)	577, 691
Sau96I	GGNCC	1 cut(s)	821
ScaI	AGTACT	2 cut(s)	443, 647
SchI	GAGTC	2 cut(s)	411, 510
ScrFI	CCNGG	3 cut(s)	167, 794, 818
SduI	GDGCHC	2 cut(s)	469, 1244
SfaNI	GCATC	5 cut(s)	320, 547, 809, 974, 1084
SfcI	CTRYAG	2 cut(s)	30, 954
SinI	GGWCC	1 cut(s)	821
SmiMI	CAYNNNNRTG	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	425, 684
SmoI	CTYRAG	2 cut(s)	425, 684
SnaBI	TACGTA	1 cut(s)	1225
Sse9I	AATT	4 cut(s)	42, 570, 722, 1229
SsiI	CCGC	4 cut(s)	333, 473, 773, 960
SspI	AATATT	2 cut(s)	78, 585
SspMI	CTAG	1 cut(s)	881
StyD4I	CCNGG	3 cut(s)	165, 792, 816
StyI	CCWWGG	2 cut(s)	831, 1128
TaaI	ACNGT	4 cut(s)	161, 204, 441, 547
TaiI	ACGT	1 cut(s)	1227
TaqI	TCGA	2 cut(s)	267, 730
TasI	AATT	4 cut(s)	42, 570, 722, 1229
TatI	WGTACW	2 cut(s)	441, 645
TauI	GCSGC	2 cut(s)	336, 962
TfiI	GAWTC	2 cut(s)	69, 413
Tru1I	TTAA	5 cut(s)	6, 650, 677, 738, 1264
Tru9I	TTAA	5 cut(s)	6, 650, 677, 738, 1264
TscAI	CASTG	3 cut(s)	21, 492, 550
TseFI	GTSAC	3 cut(s)	94, 161, 787
Tsp45I	GTSAC	3 cut(s)	94, 161, 787
TspDTI	ATGAA	3 cut(s)	385, 590, 1003
TspGWI	ACGGA	2 cut(s)	497, 903
TspRI	CASTG	3 cut(s)	21, 492, 550
Tth111I	GACNNNGTC	1 cut(s)	1148
Van91I	CCANNNNNTGG	1 cut(s)	188
VneI	GTGCAC	1 cut(s)	1240
VpaK11BI	GGWCC	1 cut(s)	821
XceI	RCATGY	1 cut(s)	177
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1126
XspI	CTAG	1 cut(s)	881
ZrmI	AGTACT	2 cut(s)	443, 647
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.