AT1G54380

Survival motor neuron (SMN) interacting protein 1 (SIP1)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
20297805 .. 20300979
3175 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G54380.1

Sequence Viewer

Length: 1548 bp
ATGATGACAAACTCCGATTCCGACCACTGTACTCCGGCGAAAACCTCAATTTCTGGGGATGGATTAGAAAAAGAGAGCGACTTTAAGAAGCAACTGAACTCTGAGATAGATCCACAAGCTTCTTCCTCGCAAAACGATGCAATAACTATGGAAGATGGAGCCGTCTCTGTAAACAATAGGGATCTGCAAGAGATAAAGGAATCATCCTTCTCTAAAGGAAGTGAGCAATATCGAGTTGATGGAGCCCTTGAAGAAAGTTTGAATTTTGAGGAGAAGGAACAAGAATCTGAAGCTCAGAGACTATTGGAAGCAGAGAAGAGAAGATTGCTGGCTGAAATCGAACTTGGGTCAATCTTTAGGAAGAGTGTTGATGTGGATACGTTGCCTAAGATCGAAGAGACGATGGATAATGATGTTGATAAGATTGAATTGGTTGATCATACTGCGTTGGTTGATGTTGTTCATCATCCTAAGAGACCAGGGACTGCTCAAAATGAGAAGGATACACCTAGAAAGCTTAAGAAAATTGGAGATAAGAGAAATGTTATTGAGGGGAGTGGAGTAGAAAACAATGGGAAGCAGTTTAGGAGATTGTACACTAGGAAACAATTGGAGTCAATGAGGTTTGCCCACATTGTGAATCAGAAGAACCTGTGGAGTGAGATGTATTCTAGGATTCTACCTGAGGTGGTGACTGAGTATGAAAGTTTAGTTTATGTGAAGAATTACAAGAGTTCAAAGTCTAATCGTGTTCGTGGGCGAACGGAGAGTGGCAATGAAGAAAATTTGGGGACTGAAGAAGGAACGGAGGACCCTGAAGACTACACTGACGATAATGATGATTACAATAGCATTTTGAGACCTGCGTTTGAAGTAGATGGAGAACCTGATTTTAGTACTGGACCACCAGAAGATGGGCTTGAATATTTAAGACGAGTCAGGTGGGAGGCTAAGGGAATTCCGAATGTAAGAGTAGCCAAGATAGATGAAAGCACGTACATAAAGAAAGAGCAAAGTGTTTATATGCCACTAATTCCTGAAATCCCCAAATGTCCAGAGTACCTGTTACCCATGAAGGAATGGGAGGACTCGTTGCTTTTGGACTTTGTACACCTTCGCCAGACTCTAACACAAAGTGCCAACAGCTGTGAGGATGAGATAATATCAAGTCAGTGTGTAGAAGATTTGCTTGTGGAGATGTTCAATAAGCATCTCCACACAGAGGAGGATGAGTCTTTTGGTGAGGTGGTAACAGACATACAAGGAATGGACTCGGTGACGCGGGTATCAAAGCTGAAAAAGCGTATATGTTTGGTTGAGAAGGAGAGCGGTTTACAGAGTAGCGATTGCAAATGGGTAGTAGCGTTGTGTGCATCATTGGAGACTCCTTTGGATGCCGATACTTGTGCTTGTCTAAGGGGTCTTCTGAGGAAGTGTGCTAGTGTTCGTGCAGAGACATCATTAGAGGTTGGAGATGAAGAAGTTATCACCATGGCAAATATGCTCATCACCATCGCCGGCAGATACTTTGGCCAAATGGGACAGTAA

Protein Analysis

515

Amino Acids

58.34

Weight (kDa)

4.72

Isoelectric Point (pI)

50.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SIP1 PF04938 295 - 512 4.6e-40 Survival motor neuron (SMN) interacting protein 1 (SIP1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 871
AccB7I CCANNNNNTGG 1 cut(s) 914
AccBSI CCGCTC 1 cut(s) 1329
AccII CGCG 1 cut(s) 1282
AciI CCGC 2 cut(s) 1282, 1329
AclWI GGATC 2 cut(s) 104, 189
AcoI YGGCCR 1 cut(s) 1531
AcsI RAATTY 3 cut(s) 262, 784, 957
AcuI CTGAAG 3 cut(s) 309, 816, 837
AdeI CACNNNGTG 2 cut(s) 637, 1136
AfaI GTAC 6 cut(s) 31, 596, 898, 998, 1061, 1110
AfiI CCNNNNNNNGG 2 cut(s) 914, 1222
AflII CTTAAG 1 cut(s) 518
AgsI TTSAA 7 cut(s) 251, 262, 428, 738, 872, 923, 1204
AjnI CCWGG 1 cut(s) 478
AjuI GAANNNNNNNTTGG 2 cut(s) 327, 359
AluBI AGCT 5 cut(s) 119, 293, 517, 1146, 1294
AluI AGCT 5 cut(s) 119, 293, 517, 1146, 1294
Alw26I GTCTC 7 cut(s) 169, 292, 392, 469, 853, 1376, 1448
AlwI GGATC 2 cut(s) 104, 189
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 1 cut(s) 1531
ApoI RAATTY 3 cut(s) 262, 784, 957
AspS9I GGNCC 2 cut(s) 811, 902
AsuHPI GGTGA 5 cut(s) 703, 1253, 1288, 1480, 1501
AvaII GGWCC 2 cut(s) 811, 902
AxyI CCTNAGG 1 cut(s) 684
BaeI ACNNNNGTAYC 2 cut(s) 1269, 1302
BalI TGGCCA 1 cut(s) 1533
BanII GRGCYC 1 cut(s) 247
BbsI GAAGAC 2 cut(s) 825, 1415
BccI CCATC 7 cut(s) 53, 149, 233, 397, 872, 908, 1520
BceAI ACGGC 1 cut(s) 146
BcgI CGANNNNNNTGC 2 cut(s) 1388, 1422
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 2 cut(s) 370, 496
BclI TGATCA 1 cut(s) 436
BcoDI GTCTC 7 cut(s) 169, 292, 392, 469, 853, 1376, 1448
BfaI CTAG 4 cut(s) 510, 600, 672, 1440
BfrI CTTAAG 1 cut(s) 518
BfuAI ACCTGC 1 cut(s) 871
BfuI GTATCC 2 cut(s) 370, 496
BmcAI AGTACT 1 cut(s) 898
Bme1390I CCNGG 1 cut(s) 480
Bme18I GGWCC 2 cut(s) 811, 902
BmgT120I GGNCC 2 cut(s) 811, 902
BmiI GGNNCC 3 cut(s) 160, 244, 813
BmrFI CCNGG 1 cut(s) 480
BmsI GCATC 4 cut(s) 127, 1219, 1382, 1384
BpiI GAAGAC 2 cut(s) 825, 1415
Bpu10I CCTNAGC 1 cut(s) 951
BsaAI YACGTR 1 cut(s) 996
BsaI GGTCTC 2 cut(s) 469, 853
BsaJI CCNNGG 2 cut(s) 479, 1491
BsaXI ACNNNNNCTCC 4 cut(s) 1076, 1106, 1217, 1247
Bsc4I CCNNNNNNNGG 2 cut(s) 914, 1222
Bse118I RCCGGY 1 cut(s) 1517
Bse1I ACTGG 1 cut(s) 904
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 781
BseBI CCWGG 1 cut(s) 480
BseDI CCNNGG 2 cut(s) 479, 1491
BseGI GGATG 6 cut(s) 64, 203, 466, 1159, 1234, 1399
BseLI CCNNNNNNNGG 2 cut(s) 914, 1222
BseMI GCAATG 1 cut(s) 781
BseMII CTCAG 5 cut(s) 93, 308, 675, 687, 1418
BseNI ACTGG 1 cut(s) 904
BseRI GAGGAG 2 cut(s) 284, 1238
BsgI GTGCAG 1 cut(s) 1470
Bsh1236I CGCG 1 cut(s) 1282
BshFI GGCC 1 cut(s) 1533
BsiSI CCGG 2 cut(s) 35, 1518
BslFI GGGAC 2 cut(s) 496, 805
BslI CCNNNNNNNGG 2 cut(s) 914, 1222
BsmAI GTCTC 7 cut(s) 169, 292, 392, 469, 853, 1376, 1448
BsmBI CGTCTC 2 cut(s) 169, 392
BsmFI GGGAC 2 cut(s) 496, 805
BsnI GGCC 1 cut(s) 1533
Bso31I GGTCTC 2 cut(s) 469, 853
Bsp1286I GDGCHC 1 cut(s) 247
Bsp1407I TGTACA 2 cut(s) 594, 1108
Bsp143I GATC 4 cut(s) 109, 181, 390, 436
Bsp19I CCATGG 1 cut(s) 1491
BspACI CCGC 2 cut(s) 1282, 1329
BspANI GGCC 1 cut(s) 1533
BspCNI CTCAG 5 cut(s) 94, 307, 676, 688, 1419
BspFNI CGCG 1 cut(s) 1282
BspLI GGNNCC 3 cut(s) 160, 244, 813
BspMI ACCTGC 1 cut(s) 871
BspPI GGATC 2 cut(s) 104, 189
BspTI CTTAAG 1 cut(s) 518
BspTNI GGTCTC 2 cut(s) 469, 853
BsrBI CCGCTC 1 cut(s) 1329
BsrDI GCAATG 1 cut(s) 781
BsrFI RCCGGY 1 cut(s) 1517
BsrGI TGTACA 2 cut(s) 594, 1108
BsrI ACTGG 1 cut(s) 904
BssAI RCCGGY 1 cut(s) 1517
BssECI CCNNGG 2 cut(s) 479, 1491
BssMI GATC 4 cut(s) 109, 181, 390, 436
BssT1I CCWWGG 1 cut(s) 1491
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 29, 1545
Bst6I CTCTTC 3 cut(s) 311, 356, 390
BstAFI CTTAAG 1 cut(s) 518
BstAUI TGTACA 2 cut(s) 594, 1108
BstBAI YACGTR 1 cut(s) 996
BstC8I GCNNGC 2 cut(s) 330, 1519
BstDEI CTNAG 9 cut(s) 102, 294, 387, 471, 684, 696, 951, 1415, 1427
BstDSI CCRYGG 1 cut(s) 1491
BstF5I GGATG 6 cut(s) 64, 203, 466, 1159, 1234, 1399
BstFNI CGCG 1 cut(s) 1282
BstKTI GATC 4 cut(s) 112, 184, 393, 439
BstMAI GTCTC 7 cut(s) 169, 292, 392, 469, 853, 1376, 1448
BstMBI GATC 4 cut(s) 109, 181, 390, 436
BstMWI GCNNNNNNNGC 2 cut(s) 1300, 1370
BstNI CCWGG 1 cut(s) 480
BstSCI CCNGG 1 cut(s) 478
BstUI CGCG 1 cut(s) 1282
BstV2I GAAGAC 2 cut(s) 825, 1415
BstX2I RGATCY 2 cut(s) 109, 181
BstYI RGATCY 2 cut(s) 109, 181
Bsu36I CCTNAGG 1 cut(s) 684
BsuI GTATCC 2 cut(s) 370, 496
BsuRI GGCC 1 cut(s) 1533
BtgI CCRYGG 1 cut(s) 1491
BtgZI GCGATG 1 cut(s) 1498
BtsCI GGATG 6 cut(s) 64, 203, 466, 1159, 1234, 1399
BtsIMutI CAGTG 3 cut(s) 25, 825, 1178
BveI ACCTGC 1 cut(s) 871
Cac8I GCNNGC 2 cut(s) 330, 1519
CaiI CAGNNNCTG 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 1517
Cfr13I GGNCC 2 cut(s) 811, 902
CseI GACGC 1 cut(s) 1288
Csp6I GTAC 6 cut(s) 30, 595, 897, 997, 1060, 1109
CviAII CATG 2 cut(s) 1072, 1492
CviQI GTAC 6 cut(s) 30, 595, 897, 997, 1060, 1109
DdeI CTNAG 9 cut(s) 102, 294, 387, 471, 684, 696, 951, 1415, 1427
DpnI GATC 4 cut(s) 111, 183, 392, 438
DpnII GATC 4 cut(s) 109, 181, 390, 436
DraIII CACNNNGTG 2 cut(s) 637, 1136
EaeI YGGCCR 1 cut(s) 1531
Eam1104I CTCTTC 3 cut(s) 311, 356, 390
EarI CTCTTC 3 cut(s) 311, 356, 390
Eco130I CCWWGG 1 cut(s) 1491
Eco24I GRGCYC 1 cut(s) 247
Eco31I GGTCTC 2 cut(s) 469, 853
Eco47I GGWCC 2 cut(s) 811, 902
Eco57I CTGAAG 3 cut(s) 309, 816, 837
Eco81I CCTNAGG 1 cut(s) 684
EcoO109I RGGNCCY 1 cut(s) 811
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 1491
EcoT38I GRGCYC 1 cut(s) 247
ErhI CCWWGG 1 cut(s) 1491
Esp3I CGTCTC 2 cut(s) 169, 392
FaeI CATG 2 cut(s) 1075, 1495
FalI AAGNNNNNCTT 4 cut(s) 903, 935, 1173, 1205
FaqI GGGAC 2 cut(s) 496, 805
FatI CATG 2 cut(s) 1071, 1491
FauI CCCGC 1 cut(s) 1275
FbaI TGATCA 1 cut(s) 436
FokI GGATG 6 cut(s) 71, 190, 453, 1166, 1241, 1406
FriOI GRGCYC 1 cut(s) 247
FspBI CTAG 4 cut(s) 510, 600, 672, 1440
HaeIII GGCC 1 cut(s) 1533
HapII CCGG 2 cut(s) 35, 1518
HgaI GACGC 1 cut(s) 1288
Hin1II CATG 2 cut(s) 1075, 1495
HindIII AAGCTT 2 cut(s) 117, 515
HpaII CCGG 2 cut(s) 35, 1518
HphI GGTGA 5 cut(s) 703, 1253, 1288, 1480, 1501
Hpy166II GTNNAC 4 cut(s) 172, 597, 1111, 1334
Hpy188I TCNGA 8 cut(s) 16, 22, 103, 289, 297, 645, 963, 1428
Hpy188III TCNNGA 2 cut(s) 1037, 1055
Hpy8I GTNNAC 4 cut(s) 172, 597, 1111, 1334
HpyAV CCTTC 7 cut(s) 217, 268, 493, 794, 1069, 1124, 1315
HpyCH4III ACNGT 2 cut(s) 29, 1545
HpyCH4IV ACGT 2 cut(s) 380, 995
HpyCH4V TGCA 5 cut(s) 140, 187, 1350, 1373, 1451
HpyF10VI GCNNNNNNNGC 2 cut(s) 1300, 1370
HpyF3I CTNAG 9 cut(s) 102, 294, 387, 471, 684, 696, 951, 1415, 1427
HpySE526I ACGT 2 cut(s) 380, 995
Hsp92II CATG 2 cut(s) 1075, 1495
KroI GCCGGC 1 cut(s) 1517
KroNI GCCGGC 1 cut(s) 1519
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 4 cut(s) 109, 181, 390, 436
LmnI GCTCC 2 cut(s) 158, 242
LweI GCATC 4 cut(s) 127, 1219, 1382, 1384
MaeI CTAG 4 cut(s) 510, 600, 672, 1440
MaeII ACGT 2 cut(s) 380, 995
MaeIII GTNAC 4 cut(s) 691, 1065, 1249, 1276
MalI GATC 4 cut(s) 111, 183, 392, 438
MbiI CCGCTC 1 cut(s) 1329
MboI GATC 4 cut(s) 109, 181, 390, 436
MfeI CAATTG 1 cut(s) 608
MflI RGATCY 2 cut(s) 109, 181
MhlI GDGCHC 1 cut(s) 247
MlsI TGGCCA 1 cut(s) 1533
MluCI AATT 9 cut(s) 48, 262, 428, 525, 608, 724, 784, 957, 1032
MluNI TGGCCA 1 cut(s) 1533
MlyI GAGTC 7 cut(s) 623, 945, 1082, 1117, 1241, 1265, 1378
MmeI TCCRAC 2 cut(s) 45, 1450
Mox20I TGGCCA 1 cut(s) 1533
MroNI GCCGGC 1 cut(s) 1517
MscI TGGCCA 1 cut(s) 1533
MseI TTAA 3 cut(s) 84, 519, 929
Msp20I TGGCCA 1 cut(s) 1533
MspA1I CMGCKG 1 cut(s) 1146
MspCI CTTAAG 1 cut(s) 518
MspI CCGG 2 cut(s) 35, 1518
MspR9I CCNGG 1 cut(s) 480
MunI CAATTG 1 cut(s) 608
MvaI CCWGG 1 cut(s) 480
MvnI CGCG 1 cut(s) 1282
MwoI GCNNNNNNNGC 2 cut(s) 1300, 1370
NaeI GCCGGC 1 cut(s) 1519
NcoI CCATGG 1 cut(s) 1491
NdeII GATC 4 cut(s) 109, 181, 390, 436
NgoMIV GCCGGC 1 cut(s) 1517
NlaIII CATG 2 cut(s) 1075, 1495
NlaIV GGNNCC 3 cut(s) 160, 244, 813
NmuCI GTSAC 2 cut(s) 691, 1276
PdiI GCCGGC 1 cut(s) 1519
PfeI GAWTC 5 cut(s) 17, 200, 284, 640, 676
PflMI CCANNNNNTGG 1 cut(s) 914
PleI GAGTC 7 cut(s) 622, 944, 1082, 1117, 1240, 1265, 1378
PpsI GAGTC 7 cut(s) 622, 944, 1082, 1117, 1240, 1265, 1378
Ppu21I YACGTR 1 cut(s) 996
PpuMI RGGWCCY 1 cut(s) 811
Psp5II RGGWCCY 1 cut(s) 811
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 3 cut(s) 160, 244, 813
PspPI GGNCC 2 cut(s) 811, 902
PspPPI RGGWCCY 1 cut(s) 811
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 109, 181
PvuII CAGCTG 1 cut(s) 1146
RsaI GTAC 6 cut(s) 31, 596, 898, 998, 1061, 1110
RsaNI GTAC 6 cut(s) 30, 595, 897, 997, 1060, 1109
SaqAI TTAA 3 cut(s) 84, 519, 929
Sau3AI GATC 4 cut(s) 109, 181, 390, 436
Sau96I GGNCC 2 cut(s) 811, 902
ScaI AGTACT 1 cut(s) 898
SchI GAGTC 7 cut(s) 623, 945, 1082, 1117, 1241, 1265, 1378
ScrFI CCNGG 1 cut(s) 480
SduI GDGCHC 1 cut(s) 247
SfaNI GCATC 4 cut(s) 127, 1219, 1382, 1384
SinI GGWCC 2 cut(s) 811, 902
SmlI CTYRAG 1 cut(s) 518
SmoI CTYRAG 1 cut(s) 518
Sse9I AATT 9 cut(s) 48, 262, 428, 525, 608, 724, 784, 957, 1032
SsiI CCGC 2 cut(s) 1282, 1329
SspI AATATT 1 cut(s) 926
SspMI CTAG 4 cut(s) 510, 600, 672, 1440
StyD4I CCNGG 1 cut(s) 478
StyI CCWWGG 1 cut(s) 1491
TaaI ACNGT 2 cut(s) 29, 1545
TaiI ACGT 2 cut(s) 383, 998
TaqI TCGA 3 cut(s) 232, 339, 393
TasI AATT 9 cut(s) 48, 262, 428, 525, 608, 724, 784, 957, 1032
TatI WGTACW 4 cut(s) 29, 594, 896, 1108
TfiI GAWTC 5 cut(s) 17, 200, 284, 640, 676
Tru1I TTAA 3 cut(s) 84, 519, 929
Tru9I TTAA 3 cut(s) 84, 519, 929
TscAI CASTG 3 cut(s) 32, 832, 1178
TseFI GTSAC 2 cut(s) 691, 1276
Tsp45I GTSAC 2 cut(s) 691, 1276
TspDTI ATGAA 6 cut(s) 452, 717, 792, 1002, 1088, 1491
TspGWI ACGGA 2 cut(s) 779, 821
TspRI CASTG 3 cut(s) 32, 832, 1178
Van91I CCANNNNNTGG 1 cut(s) 914
Vha464I CTTAAG 1 cut(s) 518
VpaK11BI GGWCC 2 cut(s) 811, 902
XapI RAATTY 3 cut(s) 262, 784, 957
XspI CTAG 4 cut(s) 510, 600, 672, 1440
ZrmI AGTACT 1 cut(s) 898
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.