Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

16606386 .. 16621561

Gene Structure 15176 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG095200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTGGAAAGATGTATACAATGGGCTTAGACTAGTGGTGGCAAGAGAGTATGATGATCTGGCAATCTCTAAGCATCAGAACAATATCCAGTTCAACTCTAGTCATCGCAAGTTCTTTGGGAAGATGGATGAGGCACCTAGCATTGTTGATGATATACGTGTTGTACAGTCATTTAGTCCCACAAATGACATTGATCCTACTCCCATCTATCTAACTCAATTTGCAATGGAAAGGCCAACCGACACATCAACCATGGCTGCAGTGCTTCAGCTGAGTCCTCTGCTCTCAGCGCATGCTCGAAGATTGTGGCTTTCTGTGAAGGGGTTCAGCTCCATGGGTCTGCTTGTGAAGATGGGTTTGAGAGATGTGTTTATTGGGATTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

128

Amino Acids

14.48

Weight (kDa)

8.07

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	15
AclWI	GGATC	1 cut(s)	188
AcuI	CTGAAG	1 cut(s)	251
AfaI	GTAC	1 cut(s)	165
AflIII	ACRYGT	1 cut(s)	157
AgsI	TTSAA	1 cut(s)	94
AhlI	ACTAGT	1 cut(s)	31
AluBI	AGCT	2 cut(s)	271, 330
AluI	AGCT	2 cut(s)	271, 330
AlwI	GGATC	1 cut(s)	188
AoxI	GGCC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	257
Asp700I	GAANNNNTTC	1 cut(s)	323
AspLEI	GCGC	1 cut(s)	292
BanI	GGYRCC	1 cut(s)	133
BbvI	GCAGC	1 cut(s)	244
BccI	CCATC	3 cut(s)	118, 212, 346
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	3 cut(s)	32, 99, 138
BfmI	CTRYAG	1 cut(s)	258
BisI	GCNGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	259
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	252, 333
Bse1I	ACTGG	1 cut(s)	88
Bse3DI	GCAATG	1 cut(s)	231
BseDI	CCNNGG	2 cut(s)	252, 333
BseGI	GGATG	1 cut(s)	133
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	2 cut(s)	263, 300
BseNI	ACTGG	1 cut(s)	88
BseXI	GCAGC	1 cut(s)	244
BshFI	GGCC	1 cut(s)	235
BshNI	GGYRCC	1 cut(s)	133
BslFI	GGGAC	1 cut(s)	162
BsmFI	GGGAC	1 cut(s)	162
BsnI	GGCC	1 cut(s)	235
Bsp1407I	TGTACA	1 cut(s)	163
Bsp143I	GATC	2 cut(s)	55, 193
Bsp19I	CCATGG	2 cut(s)	252, 333
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	2 cut(s)	264, 299
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	133
BsrDI	GCAATG	1 cut(s)	231
BsrGI	TGTACA	1 cut(s)	163
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	2 cut(s)	252, 333
BssMI	GATC	2 cut(s)	55, 193
BssNAI	GTATAC	1 cut(s)	16
BssT1I	CCWWGG	2 cut(s)	252, 333
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	168
BstAUI	TGTACA	1 cut(s)	163
BstBAI	YACGTR	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	5 cut(s)	26, 69, 272, 286, 384
BstDSI	CCRYGG	2 cut(s)	252, 333
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	292
BstKTI	GATC	2 cut(s)	58, 196
BstMBI	GATC	2 cut(s)	55, 193
BstMWI	GCNNNNNNNGC	1 cut(s)	289
BstNSI	RCATGY	1 cut(s)	296
BstSFI	CTRYAG	1 cut(s)	258
BstV1I	GCAGC	1 cut(s)	244
BstZ17I	GTATAC	1 cut(s)	16
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	2 cut(s)	252, 333
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	133
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	294
CfoI	GCGC	1 cut(s)	292
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	3 cut(s)	253, 293, 334
CviJI	RGCY	6 cut(s)	25, 235, 257, 271, 310, 330
CviKI_1	RGCY	6 cut(s)	25, 235, 257, 271, 310, 330
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	5 cut(s)	26, 69, 272, 286, 384
DpnI	GATC	2 cut(s)	57, 195
DpnII	GATC	2 cut(s)	55, 193
Eco130I	CCWWGG	2 cut(s)	252, 333
Eco57I	CTGAAG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	252, 333
ErhI	CCWWGG	2 cut(s)	252, 333
FaeI	CATG	3 cut(s)	256, 296, 337
FaiI	YATR	6 cut(s)	16, 51, 155, 254, 294, 335
FaqI	GGGAC	1 cut(s)	162
FatI	CATG	3 cut(s)	252, 292, 333
FblI	GTMKAC	1 cut(s)	15
Fnu4HI	GCNGC	1 cut(s)	258
FokI	GGATG	1 cut(s)	140
Fsp4HI	GCNGC	1 cut(s)	258
FspBI	CTAG	3 cut(s)	32, 99, 138
GlaI	GCGC	1 cut(s)	291
GluI	GCNGC	1 cut(s)	258
HaeIII	GGCC	1 cut(s)	235
HhaI	GCGC	1 cut(s)	292
Hin1II	CATG	3 cut(s)	256, 296, 337
Hin6I	GCGC	1 cut(s)	290
HinP1I	GCGC	1 cut(s)	290
HinfI	GANTC	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	1 cut(s)	78
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4IV	ACGT	1 cut(s)	157
HpyCH4V	TGCA	2 cut(s)	224, 260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	289
HpyF3I	CTNAG	5 cut(s)	26, 69, 272, 286, 384
HpySE526I	ACGT	1 cut(s)	157
Hsp92II	CATG	3 cut(s)	256, 296, 337
HspAI	GCGC	1 cut(s)	290
Kzo9I	GATC	2 cut(s)	55, 193
LmnI	GCTCC	1 cut(s)	335
LpnPI	CCDG	2 cut(s)	44, 101
Lsp1109I	GCAGC	1 cut(s)	244
LweI	GCATC	1 cut(s)	82
MaeI	CTAG	3 cut(s)	32, 99, 138
MaeII	ACGT	1 cut(s)	157
MalI	GATC	2 cut(s)	57, 195
MboI	GATC	2 cut(s)	55, 193
MboII	GAAGA	3 cut(s)	133, 312, 361
MluCI	AATT	1 cut(s)	218
MlyI	GAGTC	1 cut(s)	283
MnlI	CCTC	2 cut(s)	124, 288
MroXI	GAANNNNTTC	1 cut(s)	323
MspA1I	CMGCKG	1 cut(s)	271
MwoI	GCNNNNNNNGC	1 cut(s)	289
NcoI	CCATGG	2 cut(s)	252, 333
NdeII	GATC	2 cut(s)	55, 193
NlaIII	CATG	3 cut(s)	256, 296, 337
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	296
PaeI	GCATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	323
PkrI	GCNGC	1 cut(s)	259
PleI	GAGTC	1 cut(s)	282
PpsI	GAGTC	1 cut(s)	282
Ppu21I	YACGTR	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	135
PstI	CTGCAG	1 cut(s)	262
PvuII	CAGCTG	1 cut(s)	271
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SatI	GCNGC	1 cut(s)	258
Sau3AI	GATC	2 cut(s)	55, 193
SchI	GAGTC	1 cut(s)	283
SetI	ASST	4 cut(s)	139, 160, 273, 332
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	1 cut(s)	258
SpeI	ACTAGT	1 cut(s)	31
SphI	GCATGC	1 cut(s)	296
Sse9I	AATT	1 cut(s)	218
SspMI	CTAG	3 cut(s)	32, 99, 138
StyI	CCWWGG	2 cut(s)	252, 333
TaaI	ACNGT	1 cut(s)	168
TaiI	ACGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	298
TasI	AATT	1 cut(s)	218
TatI	WGTACW	1 cut(s)	163
TscAI	CASTG	1 cut(s)	267
TseI	GCWGC	1 cut(s)	257
TspRI	CASTG	1 cut(s)	267
XceI	RCATGY	1 cut(s)	296
XmiI	GTMKAC	1 cut(s)	15
XmnI	GAANNNNTTC	1 cut(s)	323
XspI	CTAG	3 cut(s)	32, 99, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.