Rmu_sc0004841.1_g000011

Survival motor neuron (SMN) interacting protein 1 (SIP1)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004841.1
Physical Location & Seq
Reverse (-)
42406 .. 48237
5832 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004841.1_g000011.1.cds

Sequence Viewer

Length: 1317 bp
atggcagacgatatgcgttctgatactacatgcgtcggcagcaagcgaagcgtggaagagatcgtagagagtcaaactgggtctccgattccagagcaagatagccaccacacaaacacgtctgacatcgtttcgcctctgaaacaagaccacgacttcatccccaagcccccgtctttcctcgtctctgattcctccaagaaggtcaagtcttcacctgactacgcccaagatatgcccgcttctgggttttctgtttctgattctgtgggaaatgaagtgggtctctctggaattcaagaaagcaagaacgaaggcttggctgctgctgagagtctcttggatgtgaaaaagaagcaattgttggaggaggttgaagccaatcttgtgcctgcagagaaaaaggtctcttctttgagagttgaaataattgatgaaactgcattgattgaaactttcaagccaatgggttttctgggtcatgctaaatctggtgcacagaggaatgcaaagcaagaagttaatggaaagaaggcaagaaaccaacgaaggaaagaaaagctggcaaatgggttcaagcctgagaataccattcatgtggttcaacctcctcacagctcaggagccaagaagatcacttactcgagggtggagttggaggccatgcggtttgtgaacgttgcagaacagaggaagctgtgggaacatgtgtacaatgggcttgggccagtggtggcaagggagtatgatgatctggcagtctctaagcatcagaagaacatccagttcaactctgatcatcgtaagggctatgggaagatggaccaggcacctggcattcttggggaatcattaggaaactcggtgaataatgaaacccaagatgtcagtctcctggaccctgtttgcagttataatgttactaatgaagatgggtatccatttccagaaaaagagtgcagcgaagatgatgacagtgacgaagagtatgctagcattcagaggcctgcctttttggttgaaggagaacccaattttgattctgggtcaccagaagatggatttgagtaccttaggcgtgtcaggtgggaagctgctcaaattccaaaagtgagggtagccaaggttgatagaagcaaatttaacagagaacagagtgattatatgcccaaaattcctgagattgctaaatgtccagaacaattgctgccgctgaaacaatgggaggaggcttttcttgccgatttttcagatctaaggctggtatgttctgatcctgattgtactttgtgctcttgccatagtagcagtatttag

Protein Analysis

438

Amino Acids

48.72

Weight (kDa)

5.1

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 915
AccB1I GGYRCC 1 cut(s) 829
AccB7I CCANNNNNTGG 1 cut(s) 1058
AciI CCGC 3 cut(s) 240, 667, 1211
AclI AACGTT 1 cut(s) 678
AclWI GGATC 1 cut(s) 1268
AcsI RAATTY 4 cut(s) 294, 1101, 1139, 1173
AfaI GTAC 3 cut(s) 713, 1070, 1285
AfiI CCNNNNNNNGG 3 cut(s) 245, 246, 1058
AflIII ACRYGT 2 cut(s) 117, 706
AgsI TTSAA 9 cut(s) 299, 377, 425, 452, 460, 577, 605, 790, 1022
AjiI CACGTC 1 cut(s) 120
AjnI CCWGG 3 cut(s) 825, 832, 894
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 347, 379
AluBI AGCT 4 cut(s) 562, 618, 697, 1094
AluI AGCT 4 cut(s) 562, 618, 697, 1094
Alw21I GWGCWC 2 cut(s) 499, 1295
Alw26I GTCTC 7 cut(s) 87, 190, 290, 341, 412, 766, 896
Alw44I GTGCAC 1 cut(s) 495
AlwI GGATC 1 cut(s) 1268
Ama87I CYCGRG 1 cut(s) 643
AoxI GGCC 3 cut(s) 660, 725, 1004
ApaLI GTGCAC 1 cut(s) 495
ApeKI GCWGC 6 cut(s) 39, 323, 326, 960, 1094, 1207
ApoI RAATTY 4 cut(s) 294, 1101, 1139, 1173
AspS9I GGNCC 3 cut(s) 725, 823, 898
AsuHPI GGTGA 3 cut(s) 207, 877, 1041
AsuNHI GCTAGC 1 cut(s) 992
AvaI CYCGRG 1 cut(s) 643
AvaII GGWCC 2 cut(s) 823, 898
AxyI CCTNAGG 1 cut(s) 1073
BaeGI GKGCMC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 829
BarI GAAGNNNNNNTAC 2 cut(s) 623, 655
BbsI GAAGAC 1 cut(s) 204
Bbv12I GWGCWC 2 cut(s) 499, 1295
BbvI GCAGC 6 cut(s) 51, 310, 313, 972, 1081, 1194
BccI CCATC 3 cut(s) 814, 926, 1052
BcgI CGANNNNNNTGC 2 cut(s) 971, 1005
BciT130I CCWGG 3 cut(s) 827, 834, 896
BciVI GTATCC 1 cut(s) 948
BclI TGATCA 1 cut(s) 796
BcoDI GTCTC 7 cut(s) 87, 190, 290, 341, 412, 766, 896
BfaI CTAG 1 cut(s) 993
BfmI CTRYAG 1 cut(s) 393
BfuI GTATCC 1 cut(s) 948
BglII AGATCT 1 cut(s) 1252
BisI GCNGC 7 cut(s) 40, 324, 327, 961, 1095, 1208, 1211
BlsI GCNGC 7 cut(s) 41, 325, 328, 962, 1096, 1209, 1212
Bme1390I CCNGG 3 cut(s) 827, 834, 896
Bme18I GGWCC 2 cut(s) 823, 898
BmeT110I CYCGRG 1 cut(s) 643
BmgBI CACGTC 1 cut(s) 120
BmgT120I GGNCC 3 cut(s) 725, 823, 898
BmiI GGNNCC 3 cut(s) 625, 831, 900
BmrFI CCNGG 3 cut(s) 827, 834, 896
BmrI ACTGGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 778
BmtI GCTAGC 1 cut(s) 996
BmuI ACTGGG 1 cut(s) 87
BpiI GAAGAC 1 cut(s) 204
Bpu10I CCTNAGC 1 cut(s) 619
BsaBI GATNNNNATC 1 cut(s) 936
BsaI GGTCTC 3 cut(s) 87, 290, 412
BsaJI CCNNGG 1 cut(s) 1122
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 245, 246, 1058
Bse1I ACTGG 3 cut(s) 82, 728, 784
Bse21I CCTNAGG 1 cut(s) 1073
Bse8I GATNNNNATC 1 cut(s) 936
BseBI CCWGG 3 cut(s) 827, 834, 896
BseDI CCNNGG 1 cut(s) 1122
BseGI GGATG 3 cut(s) 159, 349, 780
BseJI GATNNNNATC 1 cut(s) 936
BseLI CCNNNNNNNGG 3 cut(s) 245, 246, 1058
BseMII CTCAG 4 cut(s) 321, 573, 633, 1170
BseNI ACTGG 3 cut(s) 82, 728, 784
BseRI GAGGAG 3 cut(s) 383, 600, 1241
BseSI GKGCMC 1 cut(s) 499
BseXI GCAGC 6 cut(s) 51, 310, 313, 972, 1081, 1194
BsgI GTGCAG 1 cut(s) 979
BshFI GGCC 3 cut(s) 662, 727, 1006
BshNI GGYRCC 1 cut(s) 829
BsiHKAI GWGCWC 2 cut(s) 499, 1295
BsiHKCI CYCGRG 1 cut(s) 643
BslI CCNNNNNNNGG 3 cut(s) 245, 246, 1058
BsmAI GTCTC 7 cut(s) 87, 190, 290, 341, 412, 766, 896
BsmBI CGTCTC 1 cut(s) 190
BsmI GAATGC 3 cut(s) 511, 837, 996
BsnI GGCC 3 cut(s) 662, 727, 1006
Bso31I GGTCTC 3 cut(s) 87, 290, 412
BsoBI CYCGRG 1 cut(s) 643
Bsp1286I GDGCHC 2 cut(s) 499, 1295
Bsp1407I TGTACA 1 cut(s) 711
Bsp143I GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
BspACI CCGC 3 cut(s) 240, 667, 1211
BspANI GGCC 3 cut(s) 662, 727, 1006
BspCNI CTCAG 4 cut(s) 322, 574, 632, 1171
BspLI GGNNCC 3 cut(s) 625, 831, 900
BspMAI CTGCAG 1 cut(s) 397
BspOI GCTAGC 1 cut(s) 996
BspPI GGATC 1 cut(s) 1268
BspT107I GGYRCC 1 cut(s) 829
BspTNI GGTCTC 3 cut(s) 87, 290, 412
BsrGI TGTACA 1 cut(s) 711
BsrI ACTGG 3 cut(s) 82, 728, 784
BssECI CCNNGG 1 cut(s) 1122
BssMI GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
BssT1I CCWWGG 1 cut(s) 1122
Bst2UI CCWGG 3 cut(s) 827, 834, 896
Bst4CI ACNGT 1 cut(s) 977
Bst6I CTCTTC 3 cut(s) 51, 415, 978
BstAUI TGTACA 1 cut(s) 711
BstC8I GCNNGC 6 cut(s) 44, 240, 393, 564, 994, 1008
BstDEI CTNAG 7 cut(s) 330, 582, 619, 765, 1073, 1179, 1256
BstEII GGTNACC 1 cut(s) 1047
BstF5I GGATG 3 cut(s) 159, 349, 780
BstKTI GATC 6 cut(s) 63, 636, 754, 799, 1255, 1276
BstMAI GTCTC 7 cut(s) 87, 190, 290, 341, 412, 766, 896
BstMBI GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
BstMWI GCNNNNNNNGC 4 cut(s) 39, 48, 1238, 1305
BstNI CCWGG 3 cut(s) 827, 834, 896
BstNSI RCATGY 2 cut(s) 33, 710
BstPI GGTNACC 1 cut(s) 1047
BstSCI CCNGG 3 cut(s) 825, 832, 894
BstSFI CTRYAG 1 cut(s) 393
BstSLI GKGCMC 1 cut(s) 499
BstV1I GCAGC 6 cut(s) 51, 310, 313, 972, 1081, 1194
BstV2I GAAGAC 1 cut(s) 204
BstX2I RGATCY 1 cut(s) 1252
BstXI CCANNNNNNTGG 2 cut(s) 598, 833
BstYI RGATCY 1 cut(s) 1252
Bsu36I CCTNAGG 1 cut(s) 1073
BsuI GTATCC 1 cut(s) 948
BsuRI GGCC 3 cut(s) 662, 727, 1006
BtrI CACGTC 1 cut(s) 120
BtsCI GGATG 3 cut(s) 159, 349, 780
BtsIMutI CAGTG 2 cut(s) 735, 982
Cac8I GCNNGC 6 cut(s) 44, 240, 393, 564, 994, 1008
Cfr13I GGNCC 3 cut(s) 725, 823, 898
CseI GACGC 1 cut(s) 22
Csp6I GTAC 3 cut(s) 712, 1069, 1284
CviAII CATG 5 cut(s) 30, 482, 596, 664, 707
CviQI GTAC 3 cut(s) 712, 1069, 1284
DdeI CTNAG 7 cut(s) 330, 582, 619, 765, 1073, 1179, 1256
DpnI GATC 6 cut(s) 62, 635, 753, 798, 1254, 1275
DpnII GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
Eam1104I CTCTTC 3 cut(s) 51, 415, 978
EarI CTCTTC 3 cut(s) 51, 415, 978
Eco130I CCWWGG 1 cut(s) 1122
Eco147I AGGCCT 1 cut(s) 1006
Eco31I GGTCTC 3 cut(s) 87, 290, 412
Eco47I GGWCC 2 cut(s) 823, 898
Eco81I CCTNAGG 1 cut(s) 1073
Eco88I CYCGRG 1 cut(s) 643
Eco91I GGTNACC 1 cut(s) 1047
EcoO65I GGTNACC 1 cut(s) 1047
EcoRI GAATTC 1 cut(s) 294
EcoRII CCWGG 3 cut(s) 825, 832, 894
EcoT14I CCWWGG 1 cut(s) 1122
ErhI CCWWGG 1 cut(s) 1122
Esp3I CGTCTC 1 cut(s) 190
FaeI CATG 5 cut(s) 33, 485, 599, 667, 710
FalI AAGNNNNNCTT 2 cut(s) 369, 401
FatI CATG 5 cut(s) 29, 481, 595, 663, 706
FauI CCCGC 1 cut(s) 247
FbaI TGATCA 1 cut(s) 796
Fnu4HI GCNGC 7 cut(s) 40, 324, 327, 961, 1095, 1208, 1211
FokI GGATG 3 cut(s) 146, 356, 767
Fsp4HI GCNGC 7 cut(s) 40, 324, 327, 961, 1095, 1208, 1211
FspBI CTAG 1 cut(s) 993
GluI GCNGC 7 cut(s) 40, 324, 327, 961, 1095, 1208, 1211
HaeIII GGCC 3 cut(s) 662, 727, 1006
HgaI GACGC 1 cut(s) 22
Hin1II CATG 5 cut(s) 33, 485, 599, 667, 710
HinfI GANTC 7 cut(s) 70, 88, 191, 263, 334, 848, 1040
HphI GGTGA 3 cut(s) 207, 877, 1041
Hpy166II GTNNAC 3 cut(s) 497, 676, 712
Hpy188III TCNNGA 8 cut(s) 92, 291, 299, 621, 947, 1178, 1196, 1277
Hpy8I GTNNAC 3 cut(s) 497, 676, 712
Hpy99I CGWCG 1 cut(s) 38
HpyAV CCTTC 5 cut(s) 196, 308, 526, 543, 1016
HpyCH4III ACNGT 1 cut(s) 977
HpyCH4IV ACGT 2 cut(s) 119, 678
HpyCH4V TGCA 7 cut(s) 395, 443, 497, 509, 683, 909, 960
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 48, 1238, 1305
HpyF3I CTNAG 7 cut(s) 330, 582, 619, 765, 1073, 1179, 1256
HpySE526I ACGT 2 cut(s) 119, 678
Hsp92II CATG 5 cut(s) 33, 485, 599, 667, 710
Ksp22I TGATCA 1 cut(s) 796
Kzo9I GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
LmnI GCTCC 1 cut(s) 623
Lsp1109I GCAGC 6 cut(s) 51, 310, 313, 972, 1081, 1194
LweI GCATC 1 cut(s) 778
MaeI CTAG 1 cut(s) 993
MaeII ACGT 2 cut(s) 119, 678
MaeIII GTNAC 3 cut(s) 919, 977, 1047
MalI GATC 6 cut(s) 62, 635, 753, 798, 1254, 1275
MboI GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
MfeI CAATTG 2 cut(s) 359, 1202
MflI RGATCY 1 cut(s) 1252
MhlI GDGCHC 2 cut(s) 499, 1295
MluCI AATT 8 cut(s) 294, 359, 429, 1033, 1101, 1139, 1173, 1202
MlyI GAGTC 2 cut(s) 79, 343
MmeI TCCRAC 2 cut(s) 345, 636
MseI TTAA 2 cut(s) 522, 1143
MslI CAYNNNNRTG 1 cut(s) 596
MspA1I CMGCKG 1 cut(s) 1213
MspR9I CCNGG 3 cut(s) 827, 834, 896
MunI CAATTG 2 cut(s) 359, 1202
Mva1269I GAATGC 3 cut(s) 511, 837, 996
MvaI CCWGG 3 cut(s) 827, 834, 896
MwoI GCNNNNNNNGC 4 cut(s) 39, 48, 1238, 1305
NdeII GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
NheI GCTAGC 1 cut(s) 992
NlaIII CATG 5 cut(s) 33, 485, 599, 667, 710
NlaIV GGNNCC 3 cut(s) 625, 831, 900
NmuCI GTSAC 2 cut(s) 977, 1047
NspI RCATGY 2 cut(s) 33, 710
PaeR7I CTCGAG 1 cut(s) 643
PceI AGGCCT 1 cut(s) 1006
PciI ACATGT 1 cut(s) 706
PctI GAATGC 3 cut(s) 511, 837, 996
PfeI GAWTC 5 cut(s) 88, 191, 263, 848, 1040
PflMI CCANNNNNTGG 1 cut(s) 1058
PfoI TCCNGGA 1 cut(s) 894
PkrI GCNGC 7 cut(s) 41, 325, 328, 962, 1096, 1209, 1212
PleI GAGTC 2 cut(s) 78, 342
PpsI GAGTC 2 cut(s) 78, 342
PscI ACATGT 1 cut(s) 706
PsiI TTATAA 1 cut(s) 915
Psp1406I AACGTT 1 cut(s) 678
Psp6I CCWGG 3 cut(s) 825, 832, 894
PspEI GGTNACC 1 cut(s) 1047
PspGI CCWGG 3 cut(s) 825, 832, 894
PspN4I GGNNCC 3 cut(s) 625, 831, 900
PspPI GGNCC 3 cut(s) 725, 823, 898
PspXI VCTCGAGB 1 cut(s) 643
PstI CTGCAG 1 cut(s) 397
PsuI RGATCY 1 cut(s) 1252
RsaI GTAC 3 cut(s) 713, 1070, 1285
RsaNI GTAC 3 cut(s) 712, 1069, 1284
RseI CAYNNNNRTG 1 cut(s) 596
SaqAI TTAA 2 cut(s) 522, 1143
SatI GCNGC 7 cut(s) 40, 324, 327, 961, 1095, 1208, 1211
Sau3AI GATC 6 cut(s) 60, 633, 751, 796, 1252, 1273
Sau96I GGNCC 3 cut(s) 725, 823, 898
SchI GAGTC 2 cut(s) 79, 343
ScrFI CCNGG 3 cut(s) 827, 834, 896
SduI GDGCHC 2 cut(s) 499, 1295
SfaNI GCATC 1 cut(s) 778
SfcI CTRYAG 1 cut(s) 393
Sfr274I CTCGAG 1 cut(s) 643
SinI GGWCC 2 cut(s) 823, 898
SlaI CTCGAG 1 cut(s) 643
SmiMI CAYNNNNRTG 1 cut(s) 596
SmlI CTYRAG 1 cut(s) 643
SmoI CTYRAG 1 cut(s) 643
Sse9I AATT 8 cut(s) 294, 359, 429, 1033, 1101, 1139, 1173, 1202
SseBI AGGCCT 1 cut(s) 1006
SsiI CCGC 3 cut(s) 240, 667, 1211
SspMI CTAG 1 cut(s) 993
StuI AGGCCT 1 cut(s) 1006
StyD4I CCNGG 3 cut(s) 825, 832, 894
StyI CCWWGG 1 cut(s) 1122
TaaI ACNGT 1 cut(s) 977
TaiI ACGT 2 cut(s) 122, 681
TaqI TCGA 1 cut(s) 644
TasI AATT 8 cut(s) 294, 359, 429, 1033, 1101, 1139, 1173, 1202
TatI WGTACW 2 cut(s) 711, 1283
TauI GCSGC 1 cut(s) 1213
TfiI GAWTC 5 cut(s) 88, 191, 263, 848, 1040
Tru1I TTAA 2 cut(s) 522, 1143
Tru9I TTAA 2 cut(s) 522, 1143
TscAI CASTG 2 cut(s) 735, 982
TseFI GTSAC 2 cut(s) 977, 1047
TseI GCWGC 6 cut(s) 39, 323, 326, 960, 1094, 1207
Tsp45I GTSAC 2 cut(s) 977, 1047
TspDTI ATGAA 6 cut(s) 148, 291, 450, 584, 888, 942
TspRI CASTG 2 cut(s) 735, 982
Van91I CCANNNNNTGG 1 cut(s) 1058
VneI GTGCAC 1 cut(s) 495
VpaK11BI GGWCC 2 cut(s) 823, 898
XapI RAATTY 4 cut(s) 294, 1101, 1139, 1173
XceI RCATGY 2 cut(s) 33, 710
XhoI CTCGAG 1 cut(s) 643
XspI CTAG 1 cut(s) 993
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.