Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

51756015 .. 51760237

Gene Structure 4223 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00257360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTGGAAAGATGTAAACAGTGGGCTTGGACTAGTGGTGGCAAGAGAGTATGATGATCCGGCAATCTCTAAGCATCGAACAATATCCGGTTCAACGTACTCTAGTCATCGTAAGTGCTTTGGGAAGAAGGATGAGGCACTTAGCATTGTTGCGTTTTGGTGTTGCGAGAGACGAAGACGAAGAGAAGGAAGGAAGGGAGGTCCGAGATGGTGGAAAAAGGTGAAGGAGGAGCTTGAGCATGGCTGTGCTTTCCCGGTCCGCTCGGAAATATGCCATTCAAACCTGGAAAAAGGCTTCACGGTGCGATCTGATCGAGCTCCCGGAAATCGGACACCAAGCGAGACCGCGCGGTTTGCTAGGGAGGTGACAGGGATGCCCACCACACCAACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

130

Amino Acids

14.83

Weight (kDa)

9.79

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	2 cut(s)	347, 349
AciI	CCGC	3 cut(s)	259, 345, 349
AclWI	GGATC	1 cut(s)	50
AfaI	GTAC	1 cut(s)	98
AfiI	CCNNNNNNNGG	1 cut(s)	327
AgsI	TTSAA	2 cut(s)	93, 279
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	1 cut(s)	282
AluBI	AGCT	2 cut(s)	232, 317
AluI	AGCT	2 cut(s)	232, 317
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	163, 335
AlwI	GGATC	1 cut(s)	50
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	2 cut(s)	200, 256
AsuC2I	CCSGG	2 cut(s)	254, 321
AsuHPI	GGTGA	2 cut(s)	232, 376
AvaII	GGWCC	2 cut(s)	200, 256
BanII	GRGCYC	1 cut(s)	319
BbsI	GAAGAC	1 cut(s)	181
Bbv12I	GWGCWC	1 cut(s)	319
BccI	CCATC	1 cut(s)	201
BciT130I	CCWGG	1 cut(s)	284
BcnI	CCSGG	2 cut(s)	254, 321
BcoDI	GTCTC	2 cut(s)	163, 335
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	3 cut(s)	32, 102, 357
Bme1390I	CCNGG	3 cut(s)	254, 284, 321
Bme18I	GGWCC	2 cut(s)	200, 256
BmgT120I	GGNCC	2 cut(s)	200, 256
BmrFI	CCNGG	3 cut(s)	254, 284, 321
BmsI	GCATC	2 cut(s)	82, 363
BpiI	GAAGAC	1 cut(s)	181
BpuEI	CTTGAG	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	254, 321
BsaI	GGTCTC	1 cut(s)	335
BsaWI	WCCGGW	1 cut(s)	86
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	284
BseGI	GGATG	2 cut(s)	136, 378
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseRI	GAGGAG	1 cut(s)	242
Bsh1236I	CGCG	2 cut(s)	347, 349
BsiHKAI	GWGCWC	1 cut(s)	319
BsiSI	CCGG	4 cut(s)	59, 87, 254, 321
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmAI	GTCTC	2 cut(s)	163, 335
BsmBI	CGTCTC	1 cut(s)	163
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	319
Bsp143I	GATC	3 cut(s)	55, 305, 310
BspACI	CCGC	3 cut(s)	259, 345, 349
BspFNI	CGCG	2 cut(s)	347, 349
BspPI	GGATC	1 cut(s)	50
BspTNI	GGTCTC	1 cut(s)	335
BsrBI	CCGCTC	1 cut(s)	261
BssMI	GATC	3 cut(s)	55, 305, 310
Bst2UI	CCWGG	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	20, 301
Bst6I	CTCTTC	1 cut(s)	175
BstDEI	CTNAG	2 cut(s)	69, 140
BstF5I	GGATG	2 cut(s)	136, 378
BstFNI	CGCG	2 cut(s)	347, 349
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	3 cut(s)	58, 308, 313
BstMAI	GTCTC	2 cut(s)	163, 335
BstMBI	GATC	3 cut(s)	55, 305, 310
BstMWI	GCNNNNNNNGC	1 cut(s)	353
BstNI	CCWGG	1 cut(s)	284
BstSCI	CCNGG	3 cut(s)	252, 282, 319
BstUI	CGCG	2 cut(s)	347, 349
BstV2I	GAAGAC	1 cut(s)	181
BtsCI	GGATG	2 cut(s)	136, 378
BtsIMutI	CAGTG	1 cut(s)	25
CfoI	GCGC	1 cut(s)	349
Cfr13I	GGNCC	2 cut(s)	200, 256
CpoI	CGGWCCG	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	97
CspI	CGGWCCG	1 cut(s)	256
CviAII	CATG	2 cut(s)	239, 390
CviJI	RGCY	5 cut(s)	25, 232, 243, 294, 317
CviKI_1	RGCY	5 cut(s)	25, 232, 243, 294, 317
CviQI	GTAC	1 cut(s)	97
DdeI	CTNAG	2 cut(s)	69, 140
DpnI	GATC	3 cut(s)	57, 307, 312
DpnII	GATC	3 cut(s)	55, 305, 310
Eam1104I	CTCTTC	1 cut(s)	175
EarI	CTCTTC	1 cut(s)	175
Ecl136II	GAGCTC	1 cut(s)	317
Eco24I	GRGCYC	1 cut(s)	319
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	2 cut(s)	200, 256
Eco53kI	GAGCTC	1 cut(s)	317
EcoICRI	GAGCTC	1 cut(s)	317
EcoRII	CCWGG	1 cut(s)	282
EcoT38I	GRGCYC	1 cut(s)	319
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	242, 393
FaiI	YATR	4 cut(s)	51, 240, 271, 391
FatI	CATG	2 cut(s)	238, 389
FokI	GGATG	2 cut(s)	143, 385
FriOI	GRGCYC	1 cut(s)	319
FspBI	CTAG	3 cut(s)	32, 102, 357
GlaI	GCGC	1 cut(s)	348
HapII	CCGG	4 cut(s)	59, 87, 254, 321
HhaI	GCGC	1 cut(s)	349
Hin1II	CATG	2 cut(s)	242, 393
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HpaII	CCGG	4 cut(s)	59, 87, 254, 321
HphI	GGTGA	2 cut(s)	232, 376
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	4 cut(s)	204, 265, 310, 330
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	5 cut(s)	121, 179, 183, 187, 217
HpyCH4III	ACNGT	2 cut(s)	20, 301
HpyCH4IV	ACGT	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	1 cut(s)	353
HpyF3I	CTNAG	2 cut(s)	69, 140
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	2 cut(s)	242, 393
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	3 cut(s)	55, 305, 310
LmnI	GCTCC	2 cut(s)	229, 322
LpnPI	CCDG	7 cut(s)	72, 100, 267, 269, 296, 334, 354
LweI	GCATC	2 cut(s)	82, 363
MaeI	CTAG	3 cut(s)	32, 102, 357
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	1 cut(s)	364
MalI	GATC	3 cut(s)	57, 307, 312
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	3 cut(s)	55, 305, 310
MboII	GAAGA	3 cut(s)	136, 186, 192
MhlI	GDGCHC	1 cut(s)	319
MnlI	CCTC	4 cut(s)	127, 191, 220, 355
MslI	CAYNNNNRTG	2 cut(s)	243, 388
MspI	CCGG	4 cut(s)	59, 87, 254, 321
MspR9I	CCNGG	3 cut(s)	254, 284, 321
MvaI	CCWGG	1 cut(s)	284
MvnI	CGCG	2 cut(s)	347, 349
MwoI	GCNNNNNNNGC	1 cut(s)	353
NciI	CCSGG	2 cut(s)	254, 321
NdeII	GATC	3 cut(s)	55, 305, 310
NlaIII	CATG	2 cut(s)	242, 393
NmuCI	GTSAC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	319
Psp124BI	GAGCTC	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	282
PspPI	GGNCC	2 cut(s)	200, 256
RsaI	GTAC	1 cut(s)	98
RsaNI	GTAC	1 cut(s)	97
RseI	CAYNNNNRTG	2 cut(s)	243, 388
Rsr2I	CGGWCCG	1 cut(s)	256
RsrII	CGGWCCG	1 cut(s)	256
SacI	GAGCTC	1 cut(s)	319
Sau3AI	GATC	3 cut(s)	55, 305, 310
Sau96I	GGNCC	2 cut(s)	200, 256
ScrFI	CCNGG	3 cut(s)	254, 284, 321
SduI	GDGCHC	1 cut(s)	319
SetI	ASST	7 cut(s)	98, 202, 222, 234, 285, 319, 366
SfaNI	GCATC	2 cut(s)	82, 363
SinI	GGWCC	2 cut(s)	200, 256
SmiMI	CAYNNNNRTG	2 cut(s)	243, 388
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
SpeI	ACTAGT	1 cut(s)	31
SsiI	CCGC	3 cut(s)	259, 345, 349
SspMI	CTAG	3 cut(s)	32, 102, 357
SstI	GAGCTC	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	252, 282, 319
TaaI	ACNGT	2 cut(s)	20, 301
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	76, 313
TscAI	CASTG	1 cut(s)	25
TseFI	GTSAC	1 cut(s)	364
Tsp45I	GTSAC	1 cut(s)	364
TspRI	CASTG	1 cut(s)	25
VpaK11BI	GGWCC	2 cut(s)	200, 256
XspI	CTAG	3 cut(s)	32, 102, 357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.