Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

20059760 .. 20062767

Gene Structure 3008 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1211800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGAGAATTCTAAGCTCATTCTCCATCTCTGCCACATCCACAAGCTTTCAAACTTAATCAATCGAACACATATCCTCATCCATTTGATCGCTCCAGCCTTGTTGTTTTACTATAGAGCCTCTTTCTTTTTCCAACACCCCAAAACCAAAGCCACAACCCTACCATGGCTTCTTGTCTTCGCCTCGGAAGTCCTCCTTGCCTTTGAATGGCTCCTCATCCAATCACTTCGATGGCGGCTTAACATGGTATCAGAGCCACCAGGCTTACGCTGTGGATTCTGGTGGTTCCATTTCTTAGTAATTTTCCAAGCTTCCGCGATTGTTCTTGGGTTGATTTTTCTGGGATATGAATTGAGATTTTACATCTCGATGAATCTGACACATGCGTCGGCTTCAAGCGAACAATCAAAGATTTCGAAGAAACCCAAACTCTCCCGCAACGCTTTGATTCTCCGACTGCAATTCGAGAACAAGATAGCCACTCGTCTGAAACAAGACACATACTTCATCGAAAAGAGCTCTCTTTGTTTGGTCTCCGAGTCCTCCAAGAAGGTGAAGAGTTCACCTCATGGCCAAGTCTCTGAGACCAATCTTGAAGAACTTCAAGAATTTTCCAATTCTGCGAATGAAAAGCTCGTATCTTTGGATTTAATTTATGGGTTTCCTGCATTTGATGGAGTAGCCCAAGATTTCATGGGAAATTGCAAGACATTTTCGCGAACCGTGTTCCCAGAGAGGCTTCCGGAGGATGACAAGCTTCTGCCGATTGACATGTTTATTTGCACAGCGGATCCGGAGAAGGAGCCAACCGGGGGGGGGGTGATGAACATGGTGTTATCTGCCATGGCAATGGACTATCCACCGGAAAAGCTTCACATGTATCTCTCTGATGACGCCGGTGCTGACGTGATTTTGAATGGGATGAGAGAGGCTGGGAGGTTTGCAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0000278 GO:0000281 GO:0000910 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005886 GO:0005975 GO:0005976 GO:0006073 GO:0007049 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009250 GO:0009832 GO:0009833 GO:0009987 GO:0012505 GO:0016020 GO:0016051 GO:0016740 GO:0016757 GO:0016758 GO:0016759 GO:0022402 GO:0030243 GO:0030244 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0051273 GO:0051274 GO:0051301 GO:0061640 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:0071944 GO:1901576 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cellulose_synt

Protein Analysis

317

Amino Acids

36.0

Weight (kDa)

7.69

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cellulose_synt	PF03552	256 - 316	8.4e-11	Cellulose synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	385
AccII	CGCG	2 cut(s)	317, 718
AccIII	TCCGGA	2 cut(s)	742, 793
AciI	CCGC	4 cut(s)	235, 315, 436, 788
AclWI	GGATC	2 cut(s)	785, 798
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	2 cut(s)	7, 608
AcyI	GRCGYC	1 cut(s)	894
AfiI	CCNNNNNNNGG	4 cut(s)	165, 207, 812, 816
AflIII	ACRYGT	2 cut(s)	771, 876
AgsI	TTSAA	6 cut(s)	51, 206, 396, 596, 605, 916
AjiI	CACGTC	1 cut(s)	907
AjnI	CCWGG	1 cut(s)	259
AluBI	AGCT	7 cut(s)	16, 46, 311, 519, 634, 757, 871
AluI	AGCT	7 cut(s)	16, 46, 311, 519, 634, 757, 871
Alw21I	GWGCWC	1 cut(s)	521
Alw26I	GTCTC	3 cut(s)	538, 578, 583
AlwI	GGATC	2 cut(s)	785, 798
Aor13HI	TCCGGA	2 cut(s)	742, 793
AoxI	GGCC	1 cut(s)	571
ApoI	RAATTY	2 cut(s)	7, 608
Asp700I	GAANNNNTTC	2 cut(s)	600, 870
AsuC2I	CCSGG	1 cut(s)	811
AsuHPI	GGTGA	3 cut(s)	555, 565, 832
AsuII	TTCGAA	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	573
BamHI	GGATCC	1 cut(s)	790
BanII	GRGCYC	1 cut(s)	521
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	1 cut(s)	521
BccI	CCATC	3 cut(s)	33, 225, 668
BciT130I	CCWGG	1 cut(s)	261
BcnI	CCSGG	1 cut(s)	811
BcoDI	GTCTC	3 cut(s)	538, 578, 583
BfmI	CTRYAG	1 cut(s)	112
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	261, 811
BmgBI	CACGTC	1 cut(s)	907
BmiI	GGNNCC	4 cut(s)	212, 287, 792, 804
BmrFI	CCNGG	2 cut(s)	261, 811
BpiI	GAAGAC	1 cut(s)	169
BplI	GAGNNNNNCTC	2 cut(s)	550, 582
BpmI	CTGGAG	1 cut(s)	78
Bpu14I	TTCGAA	1 cut(s)	416
BpuMI	CCSGG	1 cut(s)	811
BsaHI	GRCGYC	1 cut(s)	894
BsaI	GGTCTC	2 cut(s)	538, 578
BsaJI	CCNNGG	4 cut(s)	164, 183, 810, 843
BsaWI	WCCGGW	3 cut(s)	742, 793, 862
Bsc4I	CCNNNNNNNGG	4 cut(s)	165, 207, 812, 816
Bse118I	RCCGGY	1 cut(s)	896
Bse3DI	GCAATG	1 cut(s)	855
BseAI	TCCGGA	2 cut(s)	742, 793
BseBI	CCWGG	1 cut(s)	261
BseDI	CCNNGG	4 cut(s)	164, 183, 810, 843
BseGI	GGATG	5 cut(s)	36, 78, 216, 754, 927
BseLI	CCNNNNNNNGG	4 cut(s)	165, 207, 812, 816
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	1 cut(s)	573
BseRI	GAGGAG	1 cut(s)	203
BseYI	CCCAGC	1 cut(s)	932
Bsh1236I	CGCG	2 cut(s)	317, 718
BshFI	GGCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	5 cut(s)	743, 794, 810, 863, 897
BslI	CCNNNNNNNGG	4 cut(s)	165, 207, 812, 816
BsmAI	GTCTC	3 cut(s)	538, 578, 583
BsnI	GGCC	1 cut(s)	573
Bso31I	GGTCTC	2 cut(s)	538, 578
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp13I	TCCGGA	2 cut(s)	742, 793
Bsp143I	GATC	2 cut(s)	87, 790
Bsp19I	CCATGG	2 cut(s)	164, 843
Bsp68I	TCGCGA	1 cut(s)	718
BspACI	CCGC	4 cut(s)	235, 315, 436, 788
BspANI	GGCC	1 cut(s)	573
BspCNI	CTCAG	1 cut(s)	574
BspEI	TCCGGA	2 cut(s)	742, 793
BspFNI	CGCG	2 cut(s)	317, 718
BspLI	GGNNCC	4 cut(s)	212, 287, 792, 804
BspPI	GGATC	2 cut(s)	785, 798
BspT104I	TTCGAA	1 cut(s)	416
BspTNI	GGTCTC	2 cut(s)	538, 578
BsrDI	GCAATG	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	896
BssAI	RCCGGY	1 cut(s)	896
BssECI	CCNNGG	4 cut(s)	164, 183, 810, 843
BssMI	GATC	2 cut(s)	87, 790
BssNI	GRCGYC	1 cut(s)	894
BssT1I	CCWWGG	2 cut(s)	164, 843
Bst2UI	CCWGG	1 cut(s)	261
Bst4CI	ACNGT	1 cut(s)	724
Bst6I	CTCTTC	1 cut(s)	551
BstACI	GRCGYC	1 cut(s)	894
BstBI	TTCGAA	1 cut(s)	416
BstDEI	CTNAG	3 cut(s)	12, 295, 582
BstDSI	CCRYGG	2 cut(s)	164, 843
BstF5I	GGATG	5 cut(s)	36, 78, 216, 754, 927
BstFNI	CGCG	2 cut(s)	317, 718
BstKTI	GATC	2 cut(s)	90, 793
BstMAI	GTCTC	3 cut(s)	538, 578, 583
BstMBI	GATC	2 cut(s)	87, 790
BstNI	CCWGG	1 cut(s)	261
BstNSI	RCATGY	3 cut(s)	386, 775, 880
BstSCI	CCNGG	2 cut(s)	259, 809
BstSFI	CTRYAG	1 cut(s)	112
BstUI	CGCG	2 cut(s)	317, 718
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	790
BstXI	CCANNNNNNTGG	1 cut(s)	850
BstYI	RGATCY	1 cut(s)	790
BsuRI	GGCC	1 cut(s)	573
BtgI	CCRYGG	2 cut(s)	164, 843
BtrI	CACGTC	1 cut(s)	907
BtsCI	GGATG	5 cut(s)	36, 78, 216, 754, 927
BtuMI	TCGCGA	1 cut(s)	718
Cfr10I	RCCGGY	1 cut(s)	896
CseI	GACGC	2 cut(s)	375, 902
CviAII	CATG	9 cut(s)	165, 244, 383, 569, 694, 772, 829, 844, 877
DdeI	CTNAG	3 cut(s)	12, 295, 582
DpnI	GATC	2 cut(s)	89, 792
DpnII	GATC	2 cut(s)	87, 790
DrdI	GACNNNNNNGTC	1 cut(s)	385
DseDI	GACNNNNNNGTC	1 cut(s)	385
EaeI	YGGCCR	1 cut(s)	571
Eam1104I	CTCTTC	1 cut(s)	551
EarI	CTCTTC	1 cut(s)	551
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	164, 843
Eco24I	GRGCYC	1 cut(s)	521
Eco31I	GGTCTC	2 cut(s)	538, 578
Eco53kI	GAGCTC	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	519
EcoRI	GAATTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	259
EcoT14I	CCWWGG	2 cut(s)	164, 843
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	164, 843
FaeI	CATG	9 cut(s)	168, 247, 386, 572, 697, 775, 832, 847, 880
FalI	AAGNNNNNCTT	2 cut(s)	180, 212
FatI	CATG	9 cut(s)	164, 243, 382, 568, 693, 771, 828, 843, 876
FauI	CCCGC	1 cut(s)	443
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	5 cut(s)	23, 65, 203, 761, 934
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	1 cut(s)	236
GluI	GCNGC	1 cut(s)	236
GsaI	CCCAGC	1 cut(s)	936
GsuI	CTGGAG	1 cut(s)	78
HaeIII	GGCC	1 cut(s)	573
HapII	CCGG	5 cut(s)	743, 794, 810, 863, 897
HgaI	GACGC	2 cut(s)	375, 902
Hin1I	GRCGYC	1 cut(s)	894
Hin1II	CATG	9 cut(s)	168, 247, 386, 572, 697, 775, 832, 847, 880
HindIII	AAGCTT	4 cut(s)	44, 309, 755, 869
HinfI	GANTC	4 cut(s)	276, 373, 448, 539
HpaII	CCGG	5 cut(s)	743, 794, 810, 863, 897
HphI	GGTGA	3 cut(s)	555, 565, 832
Hpy166II	GTNNAC	1 cut(s)	563
Hpy188I	TCNGA	8 cut(s)	187, 253, 378, 455, 489, 538, 583, 889
Hpy188III	TCNNGA	7 cut(s)	367, 466, 593, 605, 717, 743, 794
Hpy8I	GTNNAC	1 cut(s)	563
Hpy99I	CGWCG	1 cut(s)	391
HpyAV	CCTTC	2 cut(s)	544, 793
HpyCH4III	ACNGT	1 cut(s)	724
HpyCH4IV	ACGT	1 cut(s)	906
HpyCH4V	TGCA	5 cut(s)	460, 668, 705, 783, 944
HpyF3I	CTNAG	3 cut(s)	12, 295, 582
HpySE526I	ACGT	1 cut(s)	906
Hsp92I	GRCGYC	1 cut(s)	894
Hsp92II	CATG	9 cut(s)	168, 247, 386, 572, 697, 775, 832, 847, 880
Kpn2I	TCCGGA	2 cut(s)	742, 793
Kzo9I	GATC	2 cut(s)	87, 790
LmnI	GCTCC	3 cut(s)	97, 216, 802
MaeII	ACGT	1 cut(s)	906
MalI	GATC	2 cut(s)	89, 792
MboI	GATC	2 cut(s)	87, 790
MboII	GAAGA	4 cut(s)	169, 430, 568, 608
MflI	RGATCY	1 cut(s)	790
MhlI	GDGCHC	1 cut(s)	521
MlsI	TGGCCA	1 cut(s)	573
MluCI	AATT	8 cut(s)	7, 300, 350, 461, 608, 616, 651, 700
MluNI	TGGCCA	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	2 cut(s)	157, 478
Mox20I	TGGCCA	1 cut(s)	573
MroI	TCCGGA	2 cut(s)	742, 793
MroXI	GAANNNNTTC	2 cut(s)	600, 870
MscI	TGGCCA	1 cut(s)	573
MseI	TTAA	3 cut(s)	56, 240, 650
MslI	CAYNNNNRTG	3 cut(s)	229, 368, 848
Msp20I	TGGCCA	1 cut(s)	573
MspA1I	CMGCKG	1 cut(s)	788
MspI	CCGG	5 cut(s)	743, 794, 810, 863, 897
MspR9I	CCNGG	2 cut(s)	261, 811
MvaI	CCWGG	1 cut(s)	261
MvnI	CGCG	2 cut(s)	317, 718
NciI	CCSGG	1 cut(s)	811
NcoI	CCATGG	2 cut(s)	164, 843
NdeII	GATC	2 cut(s)	87, 790
NlaIII	CATG	9 cut(s)	168, 247, 386, 572, 697, 775, 832, 847, 880
NlaIV	GGNNCC	4 cut(s)	212, 287, 792, 804
NruI	TCGCGA	1 cut(s)	718
NspI	RCATGY	3 cut(s)	386, 775, 880
NspV	TTCGAA	1 cut(s)	416
PciI	ACATGT	2 cut(s)	771, 876
PdmI	GAANNNNTTC	2 cut(s)	600, 870
PfeI	GAWTC	3 cut(s)	276, 373, 448
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
PscI	ACATGT	2 cut(s)	771, 876
Psp124BI	GAGCTC	1 cut(s)	521
Psp6I	CCWGG	1 cut(s)	259
PspFI	CCCAGC	1 cut(s)	932
PspGI	CCWGG	1 cut(s)	259
PspN4I	GGNNCC	4 cut(s)	212, 287, 792, 804
PsuI	RGATCY	1 cut(s)	790
RruI	TCGCGA	1 cut(s)	718
RseI	CAYNNNNRTG	3 cut(s)	229, 368, 848
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	3 cut(s)	56, 240, 650
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	2 cut(s)	87, 790
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	2 cut(s)	261, 811
SduI	GDGCHC	1 cut(s)	521
SfcI	CTRYAG	1 cut(s)	112
SfuI	TTCGAA	1 cut(s)	416
SgrAI	CRCCGGYG	1 cut(s)	896
SmiMI	CAYNNNNRTG	3 cut(s)	229, 368, 848
Sse9I	AATT	8 cut(s)	7, 300, 350, 461, 608, 616, 651, 700
SsiI	CCGC	4 cut(s)	235, 315, 436, 788
SstI	GAGCTC	1 cut(s)	521
StyD4I	CCNGG	2 cut(s)	259, 809
StyI	CCWWGG	2 cut(s)	164, 843
TaaI	ACNGT	1 cut(s)	724
TaiI	ACGT	1 cut(s)	909
TaqI	TCGA	6 cut(s)	64, 229, 368, 416, 465, 510
TasI	AATT	8 cut(s)	7, 300, 350, 461, 608, 616, 651, 700
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	3 cut(s)	276, 373, 448
Tru1I	TTAA	3 cut(s)	56, 240, 650
Tru9I	TTAA	3 cut(s)	56, 240, 650
TspDTI	ATGAA	6 cut(s)	363, 386, 496, 642, 682, 839
XapI	RAATTY	2 cut(s)	7, 608
XceI	RCATGY	3 cut(s)	386, 775, 880
XmnI	GAANNNNTTC	2 cut(s)	600, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.