Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009637.1

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

5153 .. 11294

Gene Structure 6142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009637.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

atggcagacgatatgggttctgatactacatgcgtcggcagcaagcgaagcgtggaagagatcgaagagattcaaactgggtctccaattccagagcaagatagccaccacacaaacacgtctgacatcgtttcgcctctgaaacaagaccacgacttcatccccaagaccccgtctttcctcgtctctgagtcctccaagaaggtcaagtcttcacctgactacgcccaagatatgcccgcttctgggttttctgcttctgattctgtgggaaatgaagtgggtctctctggaattcaagaaagcaagaacgaaggcttggctgctgctgagaatctcttggatgtgaaaaagaagcaattgttggaggaggttgaagccaatcttgtccctgcagagaaaaaggtctcttctttgagagttgaaataattgatgaaactgcattgattgaaactttcaagccaatgggttttctgggtcatgctaagtctggtgcacagaggaatgcaaagcaagaagttaatggaaagaaggcaagaaaccaacgaaggaaagagaagctggcaaatgggttcaagcctgagaataccattcatgtggttcaacctcctcacagctcaggagtcaagaagatcacttactcgagggtggagttggaggccatgcggtttgtgaacgttgcagaacagaggaagctgtgggaacatgtgtacaatgggcttgggccagtggtggcaagggagtatgatgatctggcagtctctaagcatcagaagaacatccagttcaactctgatcatcgtaagccctatgggaagatggaccaggcacctggcattcttggtggtagtgcctcaccccctgtggaaaacttcagtcctaaagcttctgtggatcatagttccagagactccccgttgttgtctgtgatttttagattggactctgttgctagagtatctatgttgagaaaacgcataaaggcagcagaggacaccagcacactgtcaagggatgattgcctgtggctatttgcgctgtgtgcagtagttgatactccactggatgctgacaccagtgcttctgtgcggagtctgctaaggaagtgtgctgcattgcgagctacaaaatctacggttgacgatgagttgataatgttgaatattcttgccacaatatcaggtagatatttcgggcagtcagaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

403

Amino Acids

44.19

Weight (kDa)

6.4

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	3 cut(s)	240, 667, 1090
AclI	AACGTT	1 cut(s)	678
AclWI	GGATC	1 cut(s)	903
AcsI	RAATTY	1 cut(s)	294
AcuI	CTGAAG	1 cut(s)	859
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	245, 246
AflIII	ACRYGT	2 cut(s)	117, 706
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	2 cut(s)	825, 832
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 347, 379
AluBI	AGCT	5 cut(s)	562, 618, 697, 887, 1124
AluI	AGCT	5 cut(s)	562, 618, 697, 887, 1124
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	6 cut(s)	87, 190, 290, 412, 766, 903
Alw44I	GTGCAC	1 cut(s)	495
AlwI	GGATC	1 cut(s)	903
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	2 cut(s)	660, 725
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	5 cut(s)	39, 323, 326, 986, 1112
ApoI	RAATTY	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	1039
AspS9I	GGNCC	2 cut(s)	725, 823
AsuHPI	GGTGA	2 cut(s)	207, 849
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	829
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	5 cut(s)	51, 310, 313, 998, 1099
BccI	CCATC	1 cut(s)	814
BciT130I	CCWGG	2 cut(s)	827, 834
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	6 cut(s)	87, 190, 290, 412, 766, 903
BfaI	CTAG	1 cut(s)	954
BfmI	CTRYAG	1 cut(s)	393
BisI	GCNGC	5 cut(s)	40, 324, 327, 987, 1113
BlsI	GCNGC	5 cut(s)	41, 325, 328, 988, 1114
Bme1390I	CCNGG	2 cut(s)	827, 834
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	643
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	2 cut(s)	725, 823
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	2 cut(s)	827, 834
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	2 cut(s)	778, 1057
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	2 cut(s)	619, 1100
BsaI	GGTCTC	3 cut(s)	87, 290, 412
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 246
Bse1I	ACTGG	5 cut(s)	82, 728, 784, 1068, 1077
Bse3DI	GCAATG	1 cut(s)	1115
BseBI	CCWGG	2 cut(s)	827, 834
BseGI	GGATG	5 cut(s)	159, 349, 780, 1021, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	245, 246
BseMI	GCAATG	1 cut(s)	1115
BseMII	CTCAG	4 cut(s)	180, 321, 573, 633
BseNI	ACTGG	5 cut(s)	82, 728, 784, 1068, 1077
BseRI	GAGGAG	2 cut(s)	383, 600
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	5 cut(s)	51, 310, 313, 998, 1099
BsgI	GTGCAG	1 cut(s)	1065
BshFI	GGCC	2 cut(s)	662, 727
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	245, 246
BsmAI	GTCTC	6 cut(s)	87, 190, 290, 412, 766, 903
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	2 cut(s)	511, 837
BsnI	GGCC	2 cut(s)	662, 727
Bso31I	GGTCTC	3 cut(s)	87, 290, 412
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	5 cut(s)	60, 633, 751, 796, 895
BspACI	CCGC	3 cut(s)	240, 667, 1090
BspANI	GGCC	2 cut(s)	662, 727
BspCNI	CTCAG	4 cut(s)	181, 322, 574, 632
BspLI	GGNNCC	1 cut(s)	831
BspMAI	CTGCAG	1 cut(s)	397
BspPI	GGATC	1 cut(s)	903
BspT107I	GGYRCC	1 cut(s)	829
BspTNI	GGTCTC	3 cut(s)	87, 290, 412
BsrDI	GCAATG	1 cut(s)	1115
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	5 cut(s)	82, 728, 784, 1068, 1077
BssMI	GATC	5 cut(s)	60, 633, 751, 796, 895
Bst2UI	CCWGG	2 cut(s)	827, 834
Bst4CI	ACNGT	2 cut(s)	1008, 1138
Bst6I	CTCTTC	3 cut(s)	51, 60, 415
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	4 cut(s)	44, 240, 564, 1122
BstDEI	CTNAG	7 cut(s)	189, 330, 486, 582, 619, 765, 1100
BstF5I	GGATG	5 cut(s)	159, 349, 780, 1021, 1072
BstHHI	GCGC	1 cut(s)	1039
BstKTI	GATC	5 cut(s)	63, 636, 754, 799, 898
BstMAI	GTCTC	6 cut(s)	87, 190, 290, 412, 766, 903
BstMBI	GATC	5 cut(s)	60, 633, 751, 796, 895
BstMWI	GCNNNNNNNGC	6 cut(s)	39, 48, 1036, 1043, 1096, 1121
BstNI	CCWGG	2 cut(s)	827, 834
BstNSI	RCATGY	2 cut(s)	33, 710
BstSCI	CCNGG	2 cut(s)	825, 832
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	5 cut(s)	51, 310, 313, 998, 1099
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	2 cut(s)	598, 833
BsuRI	GGCC	2 cut(s)	662, 727
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	159, 349, 780, 1021, 1072
BtsIMutI	CAGTG	4 cut(s)	735, 1004, 1061, 1084
Cac8I	GCNNGC	4 cut(s)	44, 240, 564, 1122
CfoI	GCGC	1 cut(s)	1039
Cfr13I	GGNCC	2 cut(s)	725, 823
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	5 cut(s)	30, 482, 596, 664, 707
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	7 cut(s)	189, 330, 486, 582, 619, 765, 1100
DpnI	GATC	5 cut(s)	62, 635, 753, 798, 897
DpnII	GATC	5 cut(s)	60, 633, 751, 796, 895
Eam1104I	CTCTTC	3 cut(s)	51, 60, 415
EarI	CTCTTC	3 cut(s)	51, 60, 415
Eco31I	GGTCTC	3 cut(s)	87, 290, 412
Eco47I	GGWCC	1 cut(s)	823
Eco57I	CTGAAG	1 cut(s)	859
Eco88I	CYCGRG	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	825, 832
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	5 cut(s)	33, 485, 599, 667, 710
FalI	AAGNNNNNCTT	2 cut(s)	369, 401
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	5 cut(s)	29, 481, 595, 663, 706
FauI	CCCGC	1 cut(s)	247
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	5 cut(s)	40, 324, 327, 987, 1113
FokI	GGATG	5 cut(s)	146, 356, 767, 1028, 1079
Fsp4HI	GCNGC	5 cut(s)	40, 324, 327, 987, 1113
FspBI	CTAG	1 cut(s)	954
GlaI	GCGC	1 cut(s)	1038
GluI	GCNGC	5 cut(s)	40, 324, 327, 987, 1113
HaeIII	GGCC	2 cut(s)	662, 727
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	1039
Hin1II	CATG	5 cut(s)	33, 485, 599, 667, 710
Hin6I	GCGC	1 cut(s)	1037
HinP1I	GCGC	1 cut(s)	1037
HincII	GTYRAC	1 cut(s)	1141
HindII	GTYRAC	1 cut(s)	1141
HindIII	AAGCTT	1 cut(s)	885
HinfI	GANTC	8 cut(s)	70, 191, 263, 334, 624, 911, 944, 1093
HphI	GGTGA	2 cut(s)	207, 849
Hpy166II	GTNNAC	4 cut(s)	497, 676, 712, 1141
Hpy188I	TCNGA	8 cut(s)	22, 124, 141, 190, 262, 774, 796, 1204
Hpy188III	TCNNGA	6 cut(s)	92, 291, 299, 621, 628, 906
Hpy8I	GTNNAC	4 cut(s)	497, 676, 712, 1141
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	4 cut(s)	196, 308, 526, 543
HpyCH4III	ACNGT	2 cut(s)	1008, 1138
HpyCH4IV	ACGT	2 cut(s)	119, 678
HpyCH4V	TGCA	7 cut(s)	395, 443, 497, 509, 683, 1046, 1115
HpyF10VI	GCNNNNNNNGC	6 cut(s)	39, 48, 1036, 1043, 1096, 1121
HpyF3I	CTNAG	7 cut(s)	189, 330, 486, 582, 619, 765, 1100
HpySE526I	ACGT	2 cut(s)	119, 678
Hsp92II	CATG	5 cut(s)	33, 485, 599, 667, 710
HspAI	GCGC	1 cut(s)	1037
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	5 cut(s)	60, 633, 751, 796, 895
Lsp1109I	GCAGC	5 cut(s)	51, 310, 313, 998, 1099
LweI	GCATC	2 cut(s)	778, 1057
MaeI	CTAG	1 cut(s)	954
MaeII	ACGT	2 cut(s)	119, 678
MalI	GATC	5 cut(s)	62, 635, 753, 798, 897
MboI	GATC	5 cut(s)	60, 633, 751, 796, 895
MboII	GAAGA	7 cut(s)	68, 77, 204, 402, 643, 787, 829
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	4 cut(s)	87, 294, 359, 429
MlyI	GAGTC	5 cut(s)	200, 633, 905, 938, 1102
MmeI	TCCRAC	2 cut(s)	345, 636
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	596
MspR9I	CCNGG	2 cut(s)	827, 834
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	511, 837
MvaI	CCWGG	2 cut(s)	827, 834
MwoI	GCNNNNNNNGC	6 cut(s)	39, 48, 1036, 1043, 1096, 1121
NdeII	GATC	5 cut(s)	60, 633, 751, 796, 895
NlaIII	CATG	5 cut(s)	33, 485, 599, 667, 710
NlaIV	GGNNCC	1 cut(s)	831
NspI	RCATGY	2 cut(s)	33, 710
PaeR7I	CTCGAG	1 cut(s)	643
PciI	ACATGT	1 cut(s)	706
PctI	GAATGC	2 cut(s)	511, 837
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	3 cut(s)	70, 263, 334
PflFI	GACNNNGTC	1 cut(s)	172
PkrI	GCNGC	5 cut(s)	41, 325, 328, 988, 1114
PleI	GAGTC	5 cut(s)	199, 632, 905, 938, 1101
PpsI	GAGTC	5 cut(s)	199, 632, 905, 938, 1101
PscI	ACATGT	1 cut(s)	706
Psp1406I	AACGTT	1 cut(s)	678
Psp6I	CCWGG	2 cut(s)	825, 832
PspGI	CCWGG	2 cut(s)	825, 832
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	2 cut(s)	725, 823
PspXI	VCTCGAGB	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	397
PsyI	GACNNNGTC	1 cut(s)	172
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	5 cut(s)	40, 324, 327, 987, 1113
Sau3AI	GATC	5 cut(s)	60, 633, 751, 796, 895
Sau96I	GGNCC	2 cut(s)	725, 823
SchI	GAGTC	5 cut(s)	200, 633, 905, 938, 1102
ScrFI	CCNGG	2 cut(s)	827, 834
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	2 cut(s)	778, 1057
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	823
SlaI	CTCGAG	1 cut(s)	643
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	87, 294, 359, 429
SsiI	CCGC	3 cut(s)	240, 667, 1090
SspI	AATATT	1 cut(s)	1165
SspMI	CTAG	1 cut(s)	954
StyD4I	CCNGG	2 cut(s)	825, 832
TaaI	ACNGT	2 cut(s)	1008, 1138
TaiI	ACGT	2 cut(s)	122, 681
TaqI	TCGA	2 cut(s)	63, 644
TasI	AATT	4 cut(s)	87, 294, 359, 429
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	3 cut(s)	70, 263, 334
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	4 cut(s)	735, 1011, 1068, 1084
TseI	GCWGC	5 cut(s)	39, 323, 326, 986, 1112
TspDTI	ATGAA	4 cut(s)	148, 291, 450, 584
TspRI	CASTG	4 cut(s)	735, 1011, 1068, 1084
Tth111I	GACNNNGTC	1 cut(s)	172
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	2 cut(s)	33, 710
XhoI	CTCGAG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	69
XspI	CTAG	1 cut(s)	954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.