Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

31184767 .. 31185404

Gene Structure 638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1258700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCCAAGATTCCTGAGATTGCTAAGTGTCCAGACGAATTGATGTCCCTGAAACAGTGGGAGGATGCATCTCTTGCTGAGTTTACAGAGCTAAGGCTGGTATGTTCCCCTCCTGATTTTTCTTCGTTCACTTCCCGTACGAGAACTATTACACAGAAACTGATTAAAAGTTGGGCAGCTCTCTTATCTCTGCTTTCCCTTATTCTTGAATCTAACAGTTGCAATCCTTTCTCATGGAAATCTTATTCCGCCTTCTGTACCTTCTTTGTTATAAGGATCTTAACGCGGAAAGGTAATGCCTTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

103

Amino Acids

11.59

Weight (kDa)

8.8

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	272
AccII	CGCG	1 cut(s)	286
AciI	CCGC	2 cut(s)	249, 286
AclWI	GGATC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	139, 259
AgsI	TTSAA	1 cut(s)	209
AluBI	AGCT	2 cut(s)	91, 179
AluI	AGCT	2 cut(s)	91, 179
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	160
ApeKI	GCWGC	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	188
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
BmsI	GCATC	2 cut(s)	55, 77
Bpu10I	CCTNAGC	1 cut(s)	92
BseGI	GGATG	1 cut(s)	70
BseMII	CTCAG	2 cut(s)	6, 69
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	1 cut(s)	286
BsiWI	CGTACG	1 cut(s)	137
BslFI	GGGAC	1 cut(s)	31
BsmFI	GGGAC	1 cut(s)	31
Bsp143I	GATC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	249, 286
BspCNI	CTCAG	2 cut(s)	7, 70
BspFNI	CGCG	1 cut(s)	286
BspPI	GGATC	1 cut(s)	284
BssMI	GATC	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	57, 218
BstAPI	GCANNNNNTGC	1 cut(s)	74
BstDEI	CTNAG	4 cut(s)	15, 24, 78, 92
BstF5I	GGATG	1 cut(s)	70
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	188
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	62
CaiI	CAGNNNCTG	1 cut(s)	160
Csp6I	GTAC	2 cut(s)	138, 258
CviAII	CATG	1 cut(s)	234
CviJI	RGCY	3 cut(s)	91, 97, 179
CviKI_1	RGCY	3 cut(s)	91, 97, 179
CviQI	GTAC	2 cut(s)	138, 258
DdeI	CTNAG	4 cut(s)	15, 24, 78, 92
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EciI	GGCGGA	1 cut(s)	238
EcoT22I	ATGCAT	1 cut(s)	70
FaeI	CATG	1 cut(s)	237
FaiI	YATR	3 cut(s)	103, 235, 272
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	1 cut(s)	233
Fnu4HI	GCNGC	1 cut(s)	177
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	1 cut(s)	177
GluI	GCNGC	1 cut(s)	177
Hin1II	CATG	1 cut(s)	237
HinfI	GANTC	2 cut(s)	10, 209
Hpy166II	GTNNAC	2 cut(s)	84, 129
Hpy188III	TCNNGA	4 cut(s)	14, 32, 113, 206
Hpy8I	GTNNAC	2 cut(s)	84, 129
HpyAV	CCTTC	2 cut(s)	262, 271
HpyCH4III	ACNGT	2 cut(s)	57, 218
HpyCH4V	TGCA	2 cut(s)	68, 222
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	4 cut(s)	15, 24, 78, 92
Hsp92II	CATG	1 cut(s)	237
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	5 cut(s)	27, 45, 62, 83, 126
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	2 cut(s)	55, 77
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	114
MflI	RGATCY	1 cut(s)	276
MluCI	AATT	1 cut(s)	38
MnlI	CCTC	2 cut(s)	55, 120
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	3 cut(s)	165, 281, 307
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	1 cut(s)	74
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	237
NsiI	ATGCAT	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	10, 209
Pfl23II	CGTACG	1 cut(s)	137
PkrI	GCNGC	1 cut(s)	178
PsiI	TTATAA	1 cut(s)	272
PspLI	CGTACG	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	160
PsuI	RGATCY	1 cut(s)	276
RsaI	GTAC	2 cut(s)	139, 259
RsaNI	GTAC	2 cut(s)	138, 258
SaqAI	TTAA	3 cut(s)	165, 281, 307
SatI	GCNGC	1 cut(s)	177
Sau3AI	GATC	1 cut(s)	276
SetI	ASST	4 cut(s)	93, 181, 263, 295
SfaNI	GCATC	2 cut(s)	55, 77
Sse9I	AATT	1 cut(s)	38
SsiI	CCGC	2 cut(s)	249, 286
TaaI	ACNGT	2 cut(s)	57, 218
TasI	AATT	1 cut(s)	38
TfiI	GAWTC	2 cut(s)	10, 209
Tru1I	TTAA	3 cut(s)	165, 281, 307
Tru9I	TTAA	3 cut(s)	165, 281, 307
TscAI	CASTG	1 cut(s)	62
TseI	GCWGC	1 cut(s)	176
TspRI	CASTG	1 cut(s)	62
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.