Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

17420994 .. 17422301

Gene Structure 1308 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G189100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGAGGGAGTGGCTTAGGTGGGAAGCTGCTCGAATTCCGAAAGTGAGAGTAGCCAAGCTTGATAGAAGTAAATTTAACATAGAGCAGAGTGATTATATGCCCAAGATTCCTGAGATTGCCAAGTGTCCAGAACAGTTGCTGCCACTGAAACAGTGGGAGGATGCATTTCTTGCTGAATTTTCAGAGCTAAGGCTGGATGTGTCTCATTTTGAGGGTTATAATGCAAGCACGTCTCAAGATCCCCAATCAAAAAATCTTCTTCATGACTCCCATCAGCTACCTGGGAGTATTGTTTTTGAAAAATTTGCTAATGTTAAATCCAAGGAAATTGACATCCACTGGCCTCATGACTGTTGCATCCTTGGGAGCTCCATTGATCAGCTTTCCTTGTCGACTACTGAAGGCAGCAATGCCTCTCTGCCTGCTGAGAACTTCAGTCCTAAGTCTCATGTGAGCCAAAGTTCTAGCGACTCACCTTTGTTGTCGTTGATCTTGCGAATGGACTCTGTAGCTCGAGTGTCGATGTTGAGAAAACGCATAAATGCGATAGAGGCCATGAGCACTCTGTCAAGGAATGACTGTCTCTGGCTATTTTCTCTGTGTGCAGTAGTTGATACTCCACTAGATGCCGATACTAGTGCTTCCCTTAGGAGTCTGCTAAGAAGGTGCGCTGCCTTGCGAGCTGCAAAGTATGTACTCGACGACGAGGTAGTAATGTTGAATATTCTTGCCACAATTTCAGGTAGATATTTTGGGCAGTCAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

257

Amino Acids

28.8

Weight (kDa)

5.9

Isoelectric Point (pI)

65.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	219
AccI	GTMKAC	1 cut(s)	392
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	4 cut(s)	33, 71, 176, 302
AcuI	CTGAAG	2 cut(s)	418, 420
AfaI	GTAC	1 cut(s)	696
AgsI	TTSAA	2 cut(s)	299, 721
AhlI	ACTAGT	1 cut(s)	635
AjiI	CACGTC	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	280
AluBI	AGCT	8 cut(s)	26, 58, 187, 277, 369, 382, 512, 683
AluI	AGCT	8 cut(s)	26, 58, 187, 277, 369, 382, 512, 683
Alw21I	GWGCWC	2 cut(s)	371, 563
Alw26I	GTCTC	4 cut(s)	207, 237, 450, 587
AlwI	GGATC	1 cut(s)	233
AlwNI	CAGNNNCTG	1 cut(s)	139
Ama87I	CYCGRG	1 cut(s)	513
AoxI	GGCC	2 cut(s)	341, 552
ApeKI	GCWGC	5 cut(s)	26, 139, 405, 671, 683
ApoI	RAATTY	4 cut(s)	33, 71, 176, 302
AspLEI	GCGC	1 cut(s)	671
AsuHPI	GGTGA	1 cut(s)	465
AvaI	CYCGRG	1 cut(s)	513
AxyI	CCTNAGG	1 cut(s)	647
BanII	GRGCYC	1 cut(s)	371
Bbv12I	GWGCWC	2 cut(s)	371, 563
BbvI	GCAGC	5 cut(s)	13, 126, 417, 658, 670
BccI	CCATC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	620, 654
BciT130I	CCWGG	1 cut(s)	282
BclI	TGATCA	1 cut(s)	376
BcoDI	GTCTC	4 cut(s)	207, 237, 450, 587
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	3 cut(s)	465, 623, 636
BfmI	CTRYAG	1 cut(s)	507
BisI	GCNGC	5 cut(s)	27, 140, 406, 672, 684
BlsI	GCNGC	5 cut(s)	28, 141, 407, 673, 685
Bme1390I	CCNGG	1 cut(s)	282
BmeT110I	CYCGRG	1 cut(s)	513
BmgBI	CACGTC	1 cut(s)	231
BmrFI	CCNGG	1 cut(s)	282
BmsI	GCATC	3 cut(s)	151, 366, 616
Bpu10I	CCTNAGC	2 cut(s)	14, 188
BpuEI	CTTGAG	1 cut(s)	219
BsaJI	CCNNGG	3 cut(s)	281, 321, 361
Bse1I	ACTGG	1 cut(s)	344
Bse21I	CCTNAGG	1 cut(s)	647
Bse3DI	GCAATG	1 cut(s)	415
BseBI	CCWGG	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	281, 321, 361
BseGI	GGATG	4 cut(s)	166, 202, 333, 357
BseMI	GCAATG	1 cut(s)	415
BseMII	CTCAG	2 cut(s)	102, 417
BseNI	ACTGG	1 cut(s)	344
BseXI	GCAGC	5 cut(s)	13, 126, 417, 658, 670
BsgI	GTGCAG	1 cut(s)	624
BshFI	GGCC	2 cut(s)	343, 554
BsiHKAI	GWGCWC	2 cut(s)	371, 563
BsiHKCI	CYCGRG	1 cut(s)	513
BsmAI	GTCTC	4 cut(s)	207, 237, 450, 587
BsmBI	CGTCTC	1 cut(s)	237
BsnI	GGCC	2 cut(s)	343, 554
BsoBI	CYCGRG	1 cut(s)	513
Bsp1286I	GDGCHC	2 cut(s)	371, 563
Bsp143I	GATC	3 cut(s)	238, 376, 489
BspANI	GGCC	2 cut(s)	343, 554
BspCNI	CTCAG	2 cut(s)	103, 418
BspHI	TCATGA	2 cut(s)	262, 346
BspPI	GGATC	1 cut(s)	233
BsrDI	GCAATG	1 cut(s)	415
BsrI	ACTGG	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	281, 321, 361
BssMI	GATC	3 cut(s)	238, 376, 489
BssT1I	CCWWGG	2 cut(s)	321, 361
Bst2UI	CCWGG	1 cut(s)	282
Bst4CI	ACNGT	4 cut(s)	135, 153, 353, 581
BstAPI	GCANNNNNTGC	1 cut(s)	170
BstC8I	GCNNGC	3 cut(s)	226, 423, 681
BstDEI	CTNAG	7 cut(s)	14, 111, 188, 426, 441, 647, 659
BstF5I	GGATG	4 cut(s)	166, 202, 333, 357
BstHHI	GCGC	1 cut(s)	671
BstKTI	GATC	3 cut(s)	241, 379, 492
BstMAI	GTCTC	4 cut(s)	207, 237, 450, 587
BstMBI	GATC	3 cut(s)	238, 376, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	170, 551, 680
BstNI	CCWGG	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	280
BstSFI	CTRYAG	1 cut(s)	507
BstV1I	GCAGC	5 cut(s)	13, 126, 417, 658, 670
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu36I	CCTNAGG	1 cut(s)	647
BsuRI	GGCC	2 cut(s)	343, 554
BtrI	CACGTC	1 cut(s)	231
BtsCI	GGATG	4 cut(s)	166, 202, 333, 357
BtsIMutI	CAGTG	3 cut(s)	143, 158, 337
Cac8I	GCNNGC	3 cut(s)	226, 423, 681
CaiI	CAGNNNCTG	1 cut(s)	139
CciI	TCATGA	2 cut(s)	262, 346
CfoI	GCGC	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	695
CviAII	CATG	4 cut(s)	263, 347, 449, 556
CviQI	GTAC	1 cut(s)	695
DdeI	CTNAG	7 cut(s)	14, 111, 188, 426, 441, 647, 659
DpnI	GATC	3 cut(s)	240, 378, 491
DpnII	GATC	3 cut(s)	238, 376, 489
Ecl136II	GAGCTC	1 cut(s)	369
Eco130I	CCWWGG	2 cut(s)	321, 361
Eco24I	GRGCYC	1 cut(s)	371
Eco53kI	GAGCTC	1 cut(s)	369
Eco57I	CTGAAG	2 cut(s)	418, 420
Eco81I	CCTNAGG	1 cut(s)	647
Eco88I	CYCGRG	1 cut(s)	513
EcoICRI	GAGCTC	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	33
EcoRII	CCWGG	1 cut(s)	280
EcoT14I	CCWWGG	2 cut(s)	321, 361
EcoT22I	ATGCAT	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	371
ErhI	CCWWGG	2 cut(s)	321, 361
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	4 cut(s)	266, 350, 452, 559
FatI	CATG	4 cut(s)	262, 346, 448, 555
FbaI	TGATCA	1 cut(s)	376
FblI	GTMKAC	1 cut(s)	392
Fnu4HI	GCNGC	5 cut(s)	27, 140, 406, 672, 684
FokI	GGATG	4 cut(s)	173, 209, 320, 344
FriOI	GRGCYC	1 cut(s)	371
Fsp4HI	GCNGC	5 cut(s)	27, 140, 406, 672, 684
FspBI	CTAG	3 cut(s)	465, 623, 636
GlaI	GCGC	1 cut(s)	670
GluI	GCNGC	5 cut(s)	27, 140, 406, 672, 684
HaeIII	GGCC	2 cut(s)	343, 554
HhaI	GCGC	1 cut(s)	671
Hin1II	CATG	4 cut(s)	266, 350, 452, 559
Hin6I	GCGC	1 cut(s)	669
HinP1I	GCGC	1 cut(s)	669
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	5 cut(s)	106, 266, 470, 503, 652
HphI	GGTGA	1 cut(s)	465
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	39, 184, 763
Hpy188III	TCNNGA	5 cut(s)	110, 128, 236, 263, 347
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	2 cut(s)	704, 707
HpyAV	CCTTC	2 cut(s)	395, 657
HpyCH4III	ACNGT	4 cut(s)	135, 153, 353, 581
HpyCH4IV	ACGT	1 cut(s)	230
HpyCH4V	TGCA	5 cut(s)	164, 224, 357, 605, 686
HpyF10VI	GCNNNNNNNGC	3 cut(s)	170, 551, 680
HpyF3I	CTNAG	7 cut(s)	14, 111, 188, 426, 441, 647, 659
HpySE526I	ACGT	1 cut(s)	230
Hsp92II	CATG	4 cut(s)	266, 350, 452, 559
HspAI	GCGC	1 cut(s)	669
Ksp22I	TGATCA	1 cut(s)	376
Kzo9I	GATC	3 cut(s)	238, 376, 489
LmnI	GCTCC	2 cut(s)	366, 374
LpnPI	CCDG	9 cut(s)	123, 141, 179, 267, 294, 325, 435, 571, 726
Lsp1109I	GCAGC	5 cut(s)	13, 126, 417, 658, 670
LweI	GCATC	3 cut(s)	151, 366, 616
MaeI	CTAG	3 cut(s)	465, 623, 636
MaeII	ACGT	1 cut(s)	230
MalI	GATC	3 cut(s)	240, 378, 491
MboI	GATC	3 cut(s)	238, 376, 489
MboII	GAAGA	2 cut(s)	248, 251
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	2 cut(s)	371, 563
MluCI	AATT	6 cut(s)	33, 71, 176, 302, 327, 735
MlyI	GAGTC	4 cut(s)	260, 464, 497, 661
MnlI	CCTC	6 cut(s)	151, 205, 354, 424, 544, 700
Mph1103I	ATGCAT	1 cut(s)	166
MseI	TTAA	2 cut(s)	75, 315
MspR9I	CCNGG	1 cut(s)	282
MvaI	CCWGG	1 cut(s)	282
MwoI	GCNNNNNNNGC	3 cut(s)	170, 551, 680
NdeII	GATC	3 cut(s)	238, 376, 489
NlaIII	CATG	4 cut(s)	266, 350, 452, 559
NsiI	ATGCAT	1 cut(s)	166
PaeR7I	CTCGAG	1 cut(s)	513
PagI	TCATGA	2 cut(s)	262, 346
PfeI	GAWTC	1 cut(s)	106
PkrI	GCNGC	5 cut(s)	28, 141, 407, 673, 685
PleI	GAGTC	4 cut(s)	260, 464, 497, 660
PpsI	GAGTC	4 cut(s)	260, 464, 497, 660
PsiI	TTATAA	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	371
Psp6I	CCWGG	1 cut(s)	280
PspGI	CCWGG	1 cut(s)	280
PspXI	VCTCGAGB	1 cut(s)	513
PstNI	CAGNNNCTG	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	238
RsaI	GTAC	1 cut(s)	696
RsaNI	GTAC	1 cut(s)	695
SacI	GAGCTC	1 cut(s)	371
SalI	GTCGAC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	75, 315
SatI	GCNGC	5 cut(s)	27, 140, 406, 672, 684
Sau3AI	GATC	3 cut(s)	238, 376, 489
SchI	GAGTC	4 cut(s)	260, 464, 497, 661
ScrFI	CCNGG	1 cut(s)	282
SduI	GDGCHC	2 cut(s)	371, 563
SfaNI	GCATC	3 cut(s)	151, 366, 616
SfcI	CTRYAG	1 cut(s)	507
Sfr274I	CTCGAG	1 cut(s)	513
SlaI	CTCGAG	1 cut(s)	513
SmlI	CTYRAG	2 cut(s)	234, 513
SmoI	CTYRAG	2 cut(s)	234, 513
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	6 cut(s)	33, 71, 176, 302, 327, 735
SspI	AATATT	1 cut(s)	724
SspMI	CTAG	3 cut(s)	465, 623, 636
SstI	GAGCTC	1 cut(s)	371
StyD4I	CCNGG	1 cut(s)	280
StyI	CCWWGG	2 cut(s)	321, 361
TaaI	ACNGT	4 cut(s)	135, 153, 353, 581
TaiI	ACGT	1 cut(s)	233
TaqI	TCGA	5 cut(s)	31, 392, 514, 521, 699
TasI	AATT	6 cut(s)	33, 71, 176, 302, 327, 735
TatI	WGTACW	1 cut(s)	694
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	2 cut(s)	75, 315
Tru9I	TTAA	2 cut(s)	75, 315
TscAI	CASTG	3 cut(s)	150, 158, 344
TseI	GCWGC	5 cut(s)	26, 139, 405, 671, 683
TspDTI	ATGAA	1 cut(s)	251
TspRI	CASTG	3 cut(s)	150, 158, 344
XapI	RAATTY	4 cut(s)	33, 71, 176, 302
XcmI	CCANNNNNNNNNTGG	2 cut(s)	150, 278
XhoI	CTCGAG	1 cut(s)	513
XmiI	GTMKAC	1 cut(s)	392
XspI	CTAG	3 cut(s)	465, 623, 636
Zsp2I	ATGCAT	1 cut(s)	166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.