Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

29767556 .. 29769792

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37875

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCAGACGATATGGGTTCTGATACTACATGCGTCGGCAGCAAGCGAAGCGTGGAAGAGATCGAAGAGATTCAAACTGGGTCTCCAATTCCAGAGCAAGATAGCCACCACACAAACACGTCTGACATCGTTTCGCCTCCGAAACAAGACCACGACTTCATCCCCAAGACCCCGCCTTTCCTCGTCTCTGATTCCTCCAAGAAGGTCAAGTCTTCACCTGACTACGCCCAAGATATGCCCACTTCTGGGTTTTCTGTTTCTGATTCTGTGGGAAATGAAGTGGGTCTCTCTGGAATTCAAGAAAGCAAGAAGGAAGGCTTGGCTGCTGCTGAGAATCTCTTGGATGTGAAAAAGAAGCAATTGTTGGAGGAGGTTGAAGCCAATCTTGTCCCTGCAGAGAAAAAGGTCTCTTCTTTGAGAGTTGAAATAATTGATGAAACTGCATTGATTGAAACTTTCAAGCCAATGGGTTTTCTGGGTCATGCTAAGTCTGGTGCACAGAGGAATGCAAAGCAAGAAGTTAATGGAAAGAAGGCAAGAAACCAACGAAGGAAAGAGAAGCTGGCAAATGGGTTCAAGCCTGAGAATACCATCCATGTGGTTCAACCTCCTCACAGCTCAGGGGCCAAGAAGATCACTTACTCGAGGATGGAGTTGGAGGCCATGCGGTTTGTGAATCTTGCAGAACAGAGGAAGCTGTGGGAACATGTGTACAATGGGCTTGGGCCAGTGGTGGCAAGGGAGTATGATGATTTGGCAGTCTCTAAGCATCAGAAGAACATCCAGTTCAACTCTGATCATCGTAAGCGCCATGGGAAGATGGACCAGGCACCTGGCATTCTTGGTGTGGGTGCTTCAAGGGGAAGATGGAATCAAATGAATATCTTTGTGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

298

Amino Acids

33.03

Weight (kDa)

7.84

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	829
AciI	CCGC	2 cut(s)	173, 667
AcsI	RAATTY	1 cut(s)	294
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	245, 246
AflIII	ACRYGT	2 cut(s)	117, 706
AjiI	CACGTC	1 cut(s)	120
AjnI	CCWGG	2 cut(s)	825, 832
AjuI	GAANNNNNNNTTGG	4 cut(s)	302, 334, 347, 379
AluBI	AGCT	3 cut(s)	562, 618, 697
AluI	AGCT	3 cut(s)	562, 618, 697
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	5 cut(s)	87, 190, 290, 412, 766
Alw44I	GTGCAC	1 cut(s)	495
Ama87I	CYCGRG	1 cut(s)	643
AoxI	GGCC	3 cut(s)	624, 660, 725
ApaLI	GTGCAC	1 cut(s)	495
ApeKI	GCWGC	3 cut(s)	39, 323, 326
ApoI	RAATTY	1 cut(s)	294
Asp700I	GAANNNNTTC	1 cut(s)	69
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	3 cut(s)	624, 725, 823
AsuHPI	GGTGA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	643
AvaII	GGWCC	1 cut(s)	823
BaeGI	GKGCMC	1 cut(s)	499
BanI	GGYRCC	1 cut(s)	829
BarI	GAAGNNNNNNTAC	2 cut(s)	623, 655
BbsI	GAAGAC	1 cut(s)	204
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	3 cut(s)	51, 310, 313
BccI	CCATC	4 cut(s)	599, 643, 814, 861
BciT130I	CCWGG	2 cut(s)	827, 834
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	5 cut(s)	87, 190, 290, 412, 766
BfmI	CTRYAG	1 cut(s)	393
BfoI	RGCGCY	1 cut(s)	811
BisI	GCNGC	3 cut(s)	40, 324, 327
BlsI	GCNGC	3 cut(s)	41, 325, 328
Bme1390I	CCNGG	2 cut(s)	827, 834
Bme18I	GGWCC	1 cut(s)	823
BmeT110I	CYCGRG	1 cut(s)	643
BmgBI	CACGTC	1 cut(s)	120
BmgT120I	GGNCC	3 cut(s)	624, 725, 823
BmiI	GGNNCC	2 cut(s)	625, 831
BmrFI	CCNGG	2 cut(s)	827, 834
BmrI	ACTGGG	1 cut(s)	87
BmsI	GCATC	1 cut(s)	778
BmuI	ACTGGG	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	204
Bpu10I	CCTNAGC	1 cut(s)	619
BsaI	GGTCTC	3 cut(s)	87, 290, 412
BsaJI	CCNNGG	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 246
Bse1I	ACTGG	3 cut(s)	82, 728, 784
BseBI	CCWGG	2 cut(s)	827, 834
BseDI	CCNNGG	1 cut(s)	811
BseGI	GGATG	5 cut(s)	159, 349, 591, 654, 780
BseLI	CCNNNNNNNGG	2 cut(s)	245, 246
BseMII	CTCAG	3 cut(s)	321, 573, 633
BseNI	ACTGG	3 cut(s)	82, 728, 784
BseRI	GAGGAG	2 cut(s)	383, 600
BseSI	GKGCMC	1 cut(s)	499
BseXI	GCAGC	3 cut(s)	51, 310, 313
BshFI	GGCC	3 cut(s)	626, 662, 727
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	499
BsiHKCI	CYCGRG	1 cut(s)	643
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	2 cut(s)	245, 246
BsmAI	GTCTC	5 cut(s)	87, 190, 290, 412, 766
BsmBI	CGTCTC	1 cut(s)	190
BsmFI	GGGAC	1 cut(s)	374
BsmI	GAATGC	2 cut(s)	511, 837
BsnI	GGCC	3 cut(s)	626, 662, 727
Bso31I	GGTCTC	3 cut(s)	87, 290, 412
BsoBI	CYCGRG	1 cut(s)	643
Bsp1286I	GDGCHC	1 cut(s)	499
Bsp1407I	TGTACA	1 cut(s)	711
Bsp143I	GATC	3 cut(s)	60, 633, 796
Bsp19I	CCATGG	1 cut(s)	811
BspACI	CCGC	2 cut(s)	173, 667
BspANI	GGCC	3 cut(s)	626, 662, 727
BspCNI	CTCAG	3 cut(s)	322, 574, 632
BspLI	GGNNCC	2 cut(s)	625, 831
BspMAI	CTGCAG	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	829
BspTNI	GGTCTC	3 cut(s)	87, 290, 412
BsrGI	TGTACA	1 cut(s)	711
BsrI	ACTGG	3 cut(s)	82, 728, 784
BssECI	CCNNGG	1 cut(s)	811
BssMI	GATC	3 cut(s)	60, 633, 796
BssT1I	CCWWGG	1 cut(s)	811
Bst2UI	CCWGG	2 cut(s)	827, 834
Bst6I	CTCTTC	3 cut(s)	51, 60, 415
BstAUI	TGTACA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	44, 564
BstDEI	CTNAG	5 cut(s)	330, 486, 582, 619, 765
BstDSI	CCRYGG	1 cut(s)	811
BstF5I	GGATG	5 cut(s)	159, 349, 591, 654, 780
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	3 cut(s)	63, 636, 799
BstMAI	GTCTC	5 cut(s)	87, 190, 290, 412, 766
BstMBI	GATC	3 cut(s)	60, 633, 796
BstMWI	GCNNNNNNNGC	2 cut(s)	39, 48
BstNI	CCWGG	2 cut(s)	827, 834
BstNSI	RCATGY	2 cut(s)	33, 710
BstSCI	CCNGG	2 cut(s)	825, 832
BstSFI	CTRYAG	1 cut(s)	393
BstSLI	GKGCMC	1 cut(s)	499
BstV1I	GCAGC	3 cut(s)	51, 310, 313
BstV2I	GAAGAC	1 cut(s)	204
BstXI	CCANNNNNNTGG	2 cut(s)	598, 833
BsuRI	GGCC	3 cut(s)	626, 662, 727
BtgI	CCRYGG	1 cut(s)	811
BtrI	CACGTC	1 cut(s)	120
BtsCI	GGATG	5 cut(s)	159, 349, 591, 654, 780
BtsIMutI	CAGTG	1 cut(s)	735
Cac8I	GCNNGC	2 cut(s)	44, 564
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	3 cut(s)	624, 725, 823
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	6 cut(s)	30, 482, 596, 664, 707, 812
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	5 cut(s)	330, 486, 582, 619, 765
DpnI	GATC	3 cut(s)	62, 635, 798
DpnII	GATC	3 cut(s)	60, 633, 796
Eam1104I	CTCTTC	3 cut(s)	51, 60, 415
EarI	CTCTTC	3 cut(s)	51, 60, 415
Eco130I	CCWWGG	1 cut(s)	811
Eco31I	GGTCTC	3 cut(s)	87, 290, 412
Eco47I	GGWCC	1 cut(s)	823
Eco88I	CYCGRG	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	825, 832
EcoT14I	CCWWGG	1 cut(s)	811
ErhI	CCWWGG	1 cut(s)	811
Esp3I	CGTCTC	1 cut(s)	190
FaeI	CATG	6 cut(s)	33, 485, 599, 667, 710, 815
FaiI	YATR	9 cut(s)	14, 31, 236, 483, 597, 665, 708, 747, 813
FalI	AAGNNNNNCTT	4 cut(s)	302, 334, 369, 401
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	29, 481, 595, 663, 706, 811
FauI	CCCGC	1 cut(s)	180
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	3 cut(s)	40, 324, 327
FokI	GGATG	5 cut(s)	146, 356, 578, 661, 767
Fsp4HI	GCNGC	3 cut(s)	40, 324, 327
GlaI	GCGC	1 cut(s)	809
GluI	GCNGC	3 cut(s)	40, 324, 327
HaeII	RGCGCY	1 cut(s)	811
HaeIII	GGCC	3 cut(s)	626, 662, 727
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	6 cut(s)	33, 485, 599, 667, 710, 815
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HinfI	GANTC	6 cut(s)	70, 191, 263, 334, 676, 871
HphI	GGTGA	1 cut(s)	207
Hpy166II	GTNNAC	2 cut(s)	497, 712
Hpy188I	TCNGA	7 cut(s)	22, 124, 141, 190, 262, 774, 796
Hpy188III	TCNNGA	3 cut(s)	92, 291, 299
Hpy8I	GTNNAC	2 cut(s)	497, 712
Hpy99I	CGWCG	1 cut(s)	38
HpyAV	CCTTC	5 cut(s)	196, 304, 308, 526, 543
HpyCH4IV	ACGT	1 cut(s)	119
HpyCH4V	TGCA	6 cut(s)	395, 443, 497, 509, 683, 892
HpyF10VI	GCNNNNNNNGC	2 cut(s)	39, 48
HpyF3I	CTNAG	5 cut(s)	330, 486, 582, 619, 765
HpySE526I	ACGT	1 cut(s)	119
Hsp92II	CATG	6 cut(s)	33, 485, 599, 667, 710, 815
HspAI	GCGC	1 cut(s)	808
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	60, 633, 796
Lsp1109I	GCAGC	3 cut(s)	51, 310, 313
LweI	GCATC	1 cut(s)	778
MaeII	ACGT	1 cut(s)	119
MalI	GATC	3 cut(s)	62, 635, 798
MboI	GATC	3 cut(s)	60, 633, 796
MboII	GAAGA	8 cut(s)	68, 77, 204, 402, 643, 787, 829, 876
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	499
MluCI	AATT	4 cut(s)	87, 294, 359, 429
MmeI	TCCRAC	2 cut(s)	345, 636
MroXI	GAANNNNTTC	1 cut(s)	69
MseI	TTAA	1 cut(s)	522
MslI	CAYNNNNRTG	1 cut(s)	596
MspR9I	CCNGG	2 cut(s)	827, 834
MunI	CAATTG	1 cut(s)	359
Mva1269I	GAATGC	2 cut(s)	511, 837
MvaI	CCWGG	2 cut(s)	827, 834
MwoI	GCNNNNNNNGC	2 cut(s)	39, 48
NcoI	CCATGG	1 cut(s)	811
NdeII	GATC	3 cut(s)	60, 633, 796
NlaIII	CATG	6 cut(s)	33, 485, 599, 667, 710, 815
NlaIV	GGNNCC	2 cut(s)	625, 831
NspI	RCATGY	2 cut(s)	33, 710
PaeR7I	CTCGAG	1 cut(s)	643
PciI	ACATGT	1 cut(s)	706
PctI	GAATGC	2 cut(s)	511, 837
PdmI	GAANNNNTTC	1 cut(s)	69
PfeI	GAWTC	6 cut(s)	70, 191, 263, 334, 676, 871
PkrI	GCNGC	3 cut(s)	41, 325, 328
PscI	ACATGT	1 cut(s)	706
Psp6I	CCWGG	2 cut(s)	825, 832
PspGI	CCWGG	2 cut(s)	825, 832
PspN4I	GGNNCC	2 cut(s)	625, 831
PspPI	GGNCC	3 cut(s)	624, 725, 823
PspXI	VCTCGAGB	1 cut(s)	643
PstI	CTGCAG	1 cut(s)	397
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	3 cut(s)	40, 324, 327
Sau3AI	GATC	3 cut(s)	60, 633, 796
Sau96I	GGNCC	3 cut(s)	624, 725, 823
ScrFI	CCNGG	2 cut(s)	827, 834
SduI	GDGCHC	1 cut(s)	499
SfaNI	GCATC	1 cut(s)	778
SfcI	CTRYAG	1 cut(s)	393
Sfr274I	CTCGAG	1 cut(s)	643
SinI	GGWCC	1 cut(s)	823
SlaI	CTCGAG	1 cut(s)	643
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	643
SmoI	CTYRAG	1 cut(s)	643
Sse9I	AATT	4 cut(s)	87, 294, 359, 429
SsiI	CCGC	2 cut(s)	173, 667
StyD4I	CCNGG	2 cut(s)	825, 832
StyI	CCWWGG	1 cut(s)	811
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	2 cut(s)	63, 644
TasI	AATT	4 cut(s)	87, 294, 359, 429
TatI	WGTACW	1 cut(s)	711
TfiI	GAWTC	6 cut(s)	70, 191, 263, 334, 676, 871
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	1 cut(s)	735
TseI	GCWGC	3 cut(s)	39, 323, 326
TspDTI	ATGAA	4 cut(s)	148, 291, 450, 893
TspRI	CASTG	1 cut(s)	735
VneI	GTGCAC	1 cut(s)	495
VpaK11BI	GGWCC	1 cut(s)	823
XapI	RAATTY	1 cut(s)	294
XceI	RCATGY	2 cut(s)	33, 710
XhoI	CTCGAG	1 cut(s)	643
XmnI	GAANNNNTTC	1 cut(s)	69

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.