Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

2756150 .. 2756683

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g02980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGCTCTTTGGGATACTTGAAAGCCTTCTGCAACATAATAGTTCAAGTATTATGTTGCAACCCCATCTTAACCAAGGCAGAATTTTCCTCCTGGCAACGTACTTATCTCATCAGCCATTGTGCCAGTATTTGTTGGGACCCAGTCTTCAGCTAGCCCAAGTACCCATGTTGGTAGCCAGCCTCAGCAGGCCCAGTCATTTGCAAAAGCAAACCAGCAGGTCTCCGACTAGTGCTACTGGAGTTTCATCCGGAGCTGGGAACTCTGCTTCTAGTCAGTCTCATTTGTCATGGCCTAGGATGACTCAAACTGATGTTCAGAAGTACACCAGTATTTTTGTGAAAGGTGACACACACAGAGATGGGAAAATCACTGATGCACAAGCCCGCGACCTATTTCTGAAATGGGGACGACCAAGAGGTAGTACTATTTTCTTTGTATTCATCTATTGGCTTGTGTTTTACAGGCACATATGCCATGTGGTTATTGAAGCTCTTTTCTTCTGTTTGTTTCTCTTCATGTTCGCTGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF-hand_4 EF-hand_5

Protein Analysis

178

Amino Acids

19.99

Weight (kDa)

9.72

Isoelectric Point (pI)

44.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	207
AccII	CGCG	1 cut(s)	387
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	1 cut(s)	385
AcsI	RAATTY	1 cut(s)	81
AcuI	CTGAAG	1 cut(s)	131
AfaI	GTAC	4 cut(s)	101, 162, 323, 424
AfiI	CCNNNNNNNGG	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	20, 45, 488
AhlI	ACTAGT	1 cut(s)	227
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	3 cut(s)	151, 254, 491
AluI	AGCT	3 cut(s)	151, 254, 491
Alw26I	GTCTC	2 cut(s)	225, 282
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	2 cut(s)	188, 290
ApoI	RAATTY	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	24
AspA2I	CCTAGG	1 cut(s)	293
AspS9I	GGNCC	2 cut(s)	137, 189
AsuHPI	GGTGA	1 cut(s)	356
AsuNHI	GCTAGC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	137
AvrII	CCTAGG	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	137
BbvCI	CCTCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	72, 353
BciT130I	CCWGG	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	6
BcoDI	GTCTC	2 cut(s)	225, 282
BcuI	ACTAGT	1 cut(s)	227
BfaI	CTAG	4 cut(s)	152, 228, 270, 294
BfuAI	ACCTGC	1 cut(s)	207
BfuI	GTATCC	1 cut(s)	6
BlnI	CCTAGG	1 cut(s)	293
BmcAI	AGTACT	1 cut(s)	424
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 189
BmiI	GGNNCC	2 cut(s)	138, 139
BmrFI	CCNGG	1 cut(s)	92
BmrI	ACTGGG	2 cut(s)	135, 186
BmsI	GCATC	1 cut(s)	364
BmtI	GCTAGC	1 cut(s)	155
BmuI	ACTGGG	2 cut(s)	135, 186
BpiI	GAAGAC	1 cut(s)	137
BpmI	CTGGAG	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	182
BsaI	GGTCTC	1 cut(s)	225
BsaJI	CCNNGG	2 cut(s)	73, 293
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	1 cut(s)	255
Bse1I	ACTGG	5 cut(s)	124, 141, 192, 241, 327
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	73, 293
BseGI	GGATG	2 cut(s)	245, 303
BseLI	CCNNNNNNNGG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	196
BseNI	ACTGG	5 cut(s)	124, 141, 192, 241, 327
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	2 cut(s)	190, 292
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	150, 420
BslI	CCNNNNNNNGG	1 cut(s)	255
BsmAI	GTCTC	2 cut(s)	225, 282
BsmFI	GGGAC	2 cut(s)	150, 420
BsnI	GGCC	2 cut(s)	190, 292
Bso31I	GGTCTC	1 cut(s)	225
Bsp13I	TCCGGA	1 cut(s)	248
BspACI	CCGC	1 cut(s)	385
BspANI	GGCC	2 cut(s)	190, 292
BspCNI	CTCAG	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	248
BspFNI	CGCG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	138, 139
BspMI	ACCTGC	1 cut(s)	207
BspOI	GCTAGC	1 cut(s)	155
BspTNI	GGTCTC	1 cut(s)	225
BsrI	ACTGG	5 cut(s)	124, 141, 192, 241, 327
BssECI	CCNNGG	2 cut(s)	73, 293
BssT1I	CCWWGG	2 cut(s)	73, 293
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	4 cut(s)	153, 178, 188, 385
BstDEI	CTNAG	1 cut(s)	182
BstF5I	GGATG	2 cut(s)	245, 303
BstFNI	CGCG	1 cut(s)	387
BstMAI	GTCTC	2 cut(s)	225, 282
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstUI	CGCG	1 cut(s)	387
BstV2I	GAAGAC	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	6
BsuRI	GGCC	2 cut(s)	190, 292
BtsCI	GGATG	2 cut(s)	245, 303
BtsIMutI	CAGTG	1 cut(s)	369
BveI	ACCTGC	1 cut(s)	207
Cac8I	GCNNGC	4 cut(s)	153, 178, 188, 385
Cfr13I	GGNCC	2 cut(s)	137, 189
Csp6I	GTAC	4 cut(s)	100, 161, 322, 423
CviAII	CATG	4 cut(s)	166, 288, 476, 517
CviQI	GTAC	4 cut(s)	100, 161, 322, 423
DdeI	CTNAG	1 cut(s)	182
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Eco130I	CCWWGG	2 cut(s)	73, 293
Eco31I	GGTCTC	1 cut(s)	225
Eco47I	GGWCC	1 cut(s)	137
Eco57I	CTGAAG	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	2 cut(s)	73, 293
ErhI	CCWWGG	2 cut(s)	73, 293
FaeI	CATG	4 cut(s)	169, 291, 479, 520
FaiI	YATR	8 cut(s)	36, 53, 167, 289, 470, 472, 477, 518
FaqI	GGGAC	2 cut(s)	150, 420
FatI	CATG	4 cut(s)	165, 287, 475, 516
FauI	CCCGC	1 cut(s)	392
FauNDI	CATATG	1 cut(s)	470
FokI	GGATG	2 cut(s)	232, 310
FspBI	CTAG	4 cut(s)	152, 228, 270, 294
GsaI	CCCAGC	1 cut(s)	258
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	190, 292
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	4 cut(s)	169, 291, 479, 520
HinfI	GANTC	1 cut(s)	301
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	3 cut(s)	225, 318, 399
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	35
HpyCH4IV	ACGT	1 cut(s)	98
HpyCH4V	TGCA	4 cut(s)	31, 58, 202, 377
HpyF3I	CTNAG	1 cut(s)	182
HpySE526I	ACGT	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	169, 291, 479, 520
KflI	GGGWCCC	1 cut(s)	137
Kpn2I	TCCGGA	1 cut(s)	248
LmnI	GCTCC	1 cut(s)	251
LweI	GCATC	1 cut(s)	364
MaeI	CTAG	4 cut(s)	152, 228, 270, 294
MaeII	ACGT	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	344
MboII	GAAGA	3 cut(s)	137, 490, 505
MluCI	AATT	2 cut(s)	81, 529
MlyI	GAGTC	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	3 cut(s)	98, 191, 410
MroI	TCCGGA	1 cut(s)	248
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	2 cut(s)	69, 528
MslI	CAYNNNNRTG	1 cut(s)	357
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	387
NdeI	CATATG	1 cut(s)	470
NheI	GCTAGC	1 cut(s)	151
NlaIII	CATG	4 cut(s)	169, 291, 479, 520
NlaIV	GGNNCC	2 cut(s)	138, 139
NmuCI	GTSAC	1 cut(s)	344
PdmI	GAANNNNTTC	1 cut(s)	24
PflFI	GACNNNGTC	1 cut(s)	141
PleI	GAGTC	1 cut(s)	295
PpsI	GAGTC	1 cut(s)	295
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	90
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	138, 139
PspPI	GGNCC	2 cut(s)	137, 189
PspPPI	RGGWCCY	1 cut(s)	137
PsyI	GACNNNGTC	1 cut(s)	141
RsaI	GTAC	4 cut(s)	101, 162, 323, 424
RsaNI	GTAC	4 cut(s)	100, 161, 322, 423
RseI	CAYNNNNRTG	1 cut(s)	357
SaqAI	TTAA	2 cut(s)	69, 528
Sau96I	GGNCC	2 cut(s)	137, 189
ScaI	AGTACT	1 cut(s)	424
SchI	GAGTC	1 cut(s)	295
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	8 cut(s)	101, 153, 221, 256, 346, 393, 421, 493
SfaNI	GCATC	1 cut(s)	364
SinI	GGWCC	1 cut(s)	137
SmiMI	CAYNNNNRTG	1 cut(s)	357
SpeI	ACTAGT	1 cut(s)	227
Sse9I	AATT	2 cut(s)	81, 529
SsiI	CCGC	1 cut(s)	385
SspMI	CTAG	4 cut(s)	152, 228, 270, 294
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	2 cut(s)	73, 293
TaiI	ACGT	1 cut(s)	101
TasI	AATT	2 cut(s)	81, 529
TatI	WGTACW	2 cut(s)	321, 422
Tru1I	TTAA	2 cut(s)	69, 528
Tru9I	TTAA	2 cut(s)	69, 528
TscAI	CASTG	1 cut(s)	376
TseFI	GTSAC	1 cut(s)	344
Tsp45I	GTSAC	1 cut(s)	344
TspDTI	ATGAA	3 cut(s)	234, 430, 505
TspRI	CASTG	1 cut(s)	376
Tth111I	GACNNNGTC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	81
XmaJI	CCTAGG	1 cut(s)	293
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	4 cut(s)	152, 228, 270, 294
ZrmI	AGTACT	1 cut(s)	424

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.