Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

4248524 .. 4252709

Gene Structure 4186 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1038300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGAAACTCAAGATGCAAGTGCCCTGGACCCTTTTTGCAGTTACATGCACTGAGGATTATGACAGTGACGAAGATTATGCTAGCATTCAGAGACCTGCCTTTGCAGTTGATGGAGAACCCAATTTTGAGTCTGGTTCACCAGAAGATGGACTTGAGTATCTTAGGCGTGTCAGGTGGGAAGCTGCCCAAATTCCGAAAGTGAAGATAGCCAAGGTTGATAGAAGTAAATTTAACAAGGAGCAGAGTGCTTATATGCCCAAGATTCCTGAGATTGCCAAGTGTCCAGAACAATTCATGCCCCTGAAACAGTGGGAGGATGCATTTCTTGCGGAATTTTCAGAGCTAAGGCTGGCTCTGTCTGGTTTTGAGGGTTCTCATGCAAGCACGTCTCGAGGTCCCCAATCAAACATTATTCTTCATGGAAAATTTGAAAAGTTACTTAATGTAGAATCCAAGGAAGTTGACTTCAACTGGCTTCAGGACTGTTCCATCGTTGGGAGCTCCACAGATCAGCCATCCTTGTCAATTAATTCAGAAAATAATGCCTCACTTCCTGCCGAGAACTCAAGTCCCAAGCTTTGTGTGACTCAAAGTTCCAGCGACACCCCCTTGTTGTCGGTGATCTTAAAAATGGACTCTGTAGCTCGAGTGTCAATGTTGAGAAAACGCATAAAAGCGGTAGAGGACATGACTACTCTGTCAAGGAATGATTGCCTGTGGCTATTTGCACTCTGTGCGGTAGTTGATATGCCACTAGATGCTGATACCAGCGCTTCTCTTCGGAGTCTGCTTAGGAAGTGCGCTGCCTTGCGAGCTGCAAAGTCTACACTTGACGACGAGGCAGTAATGCTGAACATTCTTGCCACGATTTCAGGTAGATATTTCGGGCAGTCGGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

301

Amino Acids

33.39

Weight (kDa)

5.05

Isoelectric Point (pI)

61.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIP1	PF04938	39 - 298	1.3e-47	Survival motor neuron (SMN) interacting protein 1 (SIP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	697
Acc36I	ACCTGC	1 cut(s)	103
AccB7I	CCANNNNNTGG	1 cut(s)	146
AccI	GTMKAC	1 cut(s)	824
AciI	CCGC	3 cut(s)	329, 677, 737
AcsI	RAATTY	4 cut(s)	189, 227, 332, 425
AcuI	CTGAAG	1 cut(s)	461
AdeI	CACNNNGTG	1 cut(s)	734
AfeI	AGCGCT	1 cut(s)	772
AfiI	CCNNNNNNNGG	2 cut(s)	146, 495
AgsI	TTSAA	2 cut(s)	431, 469
AjiI	CACGTC	1 cut(s)	387
AjnI	CCWGG	1 cut(s)	23
AluBI	AGCT	6 cut(s)	182, 343, 501, 577, 644, 815
AluI	AGCT	6 cut(s)	182, 343, 501, 577, 644, 815
Alw21I	GWGCWC	1 cut(s)	503
Alw26I	GTCTC	2 cut(s)	85, 393
Ama87I	CYCGRG	2 cut(s)	390, 645
Aor51HI	AGCGCT	1 cut(s)	772
ApeKI	GCWGC	3 cut(s)	182, 803, 815
ApoI	RAATTY	4 cut(s)	189, 227, 332, 425
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	773, 803
AspS9I	GGNCC	2 cut(s)	27, 395
AsuHPI	GGTGA	2 cut(s)	129, 631
AsuNHI	GCTAGC	1 cut(s)	80
AvaI	CYCGRG	2 cut(s)	390, 645
AvaII	GGWCC	2 cut(s)	27, 395
BaeGI	GKGCMC	1 cut(s)	24
BaeI	ACNNNNGTAYC	2 cut(s)	140, 173
BanII	GRGCYC	1 cut(s)	503
Bbv12I	GWGCWC	1 cut(s)	503
BbvI	GCAGC	3 cut(s)	169, 790, 802
BccI	CCATC	4 cut(s)	104, 140, 497, 523
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	1 cut(s)	25
BcoDI	GTCTC	2 cut(s)	85, 393
BfaI	CTAG	2 cut(s)	81, 755
BfmI	CTRYAG	1 cut(s)	639
BfoI	RGCGCY	1 cut(s)	774
BfuAI	ACCTGC	1 cut(s)	103
BisI	GCNGC	3 cut(s)	183, 804, 816
BlsI	GCNGC	3 cut(s)	184, 805, 817
Bme1390I	CCNGG	1 cut(s)	25
Bme18I	GGWCC	2 cut(s)	27, 395
BmeT110I	CYCGRG	2 cut(s)	390, 645
BmgBI	CACGTC	1 cut(s)	387
BmgT120I	GGNCC	2 cut(s)	27, 395
BmiI	GGNNCC	2 cut(s)	29, 397
BmrFI	CCNGG	1 cut(s)	25
BmsI	GCATC	3 cut(s)	3, 307, 748
BmtI	GCTAGC	1 cut(s)	84
Bpu10I	CCTNAGC	2 cut(s)	344, 791
BpuEI	CTTGAG	2 cut(s)	173, 550
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	3 cut(s)	23, 210, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	146, 495
Bse1I	ACTGG	1 cut(s)	476
BseBI	CCWGG	1 cut(s)	25
BseDI	CCNNGG	3 cut(s)	23, 210, 453
BseGI	GGATG	2 cut(s)	322, 515
BseLI	CCNNNNNNNGG	2 cut(s)	146, 495
BseMII	CTCAG	2 cut(s)	42, 258
BseNI	ACTGG	1 cut(s)	476
BseSI	GKGCMC	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	169, 790, 802
BsiHKAI	GWGCWC	1 cut(s)	503
BsiHKCI	CYCGRG	2 cut(s)	390, 645
BslFI	GGGAC	2 cut(s)	381, 555
BslI	CCNNNNNNNGG	2 cut(s)	146, 495
BsmAI	GTCTC	2 cut(s)	85, 393
BsmBI	CGTCTC	1 cut(s)	393
BsmFI	GGGAC	2 cut(s)	381, 555
BsmI	GAATGC	1 cut(s)	84
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	2 cut(s)	390, 645
Bsp1286I	GDGCHC	2 cut(s)	24, 503
Bsp143I	GATC	2 cut(s)	508, 621
BspACI	CCGC	3 cut(s)	329, 677, 737
BspCNI	CTCAG	2 cut(s)	43, 259
BspLI	GGNNCC	2 cut(s)	29, 397
BspMI	ACCTGC	1 cut(s)	103
BspOI	GCTAGC	1 cut(s)	84
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	3 cut(s)	23, 210, 453
BssMI	GATC	2 cut(s)	508, 621
BssT1I	CCWWGG	2 cut(s)	210, 453
Bst2UI	CCWGG	1 cut(s)	25
Bst4CI	ACNGT	3 cut(s)	65, 309, 485
Bst6I	CTCTTC	1 cut(s)	783
BstAPI	GCANNNNNTGC	2 cut(s)	326, 734
BstC8I	GCNNGC	4 cut(s)	82, 351, 382, 813
BstDEI	CTNAG	5 cut(s)	51, 161, 267, 344, 791
BstF5I	GGATG	2 cut(s)	322, 515
BstH2I	RGCGCY	1 cut(s)	774
BstHHI	GCGC	2 cut(s)	773, 803
BstKTI	GATC	2 cut(s)	511, 624
BstMAI	GTCTC	2 cut(s)	85, 393
BstMBI	GATC	2 cut(s)	508, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 734, 812
BstNI	CCWGG	1 cut(s)	25
BstNSI	RCATGY	1 cut(s)	48
BstSCI	CCNGG	1 cut(s)	23
BstSFI	CTRYAG	1 cut(s)	639
BstSLI	GKGCMC	1 cut(s)	24
BstV1I	GCAGC	3 cut(s)	169, 790, 802
BtrI	CACGTC	1 cut(s)	387
BtsCI	GGATG	2 cut(s)	322, 515
BtsIMutI	CAGTG	3 cut(s)	48, 70, 314
BveI	ACCTGC	1 cut(s)	103
Cac8I	GCNNGC	4 cut(s)	82, 351, 382, 813
CfoI	GCGC	2 cut(s)	773, 803
Cfr13I	GGNCC	2 cut(s)	27, 395
CviAII	CATG	5 cut(s)	45, 295, 377, 419, 688
DdeI	CTNAG	5 cut(s)	51, 161, 267, 344, 791
DpnI	GATC	2 cut(s)	510, 623
DpnII	GATC	2 cut(s)	508, 621
DraIII	CACNNNGTG	1 cut(s)	734
DrdI	GACNNNNNNGTC	1 cut(s)	697
DseDI	GACNNNNNNGTC	1 cut(s)	697
Eam1104I	CTCTTC	1 cut(s)	783
EarI	CTCTTC	1 cut(s)	783
Ecl136II	GAGCTC	1 cut(s)	501
Eco130I	CCWWGG	2 cut(s)	210, 453
Eco24I	GRGCYC	1 cut(s)	503
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	2 cut(s)	27, 395
Eco47III	AGCGCT	1 cut(s)	772
Eco53kI	GAGCTC	1 cut(s)	501
Eco57I	CTGAAG	1 cut(s)	461
Eco88I	CYCGRG	2 cut(s)	390, 645
EcoICRI	GAGCTC	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	395
EcoRII	CCWGG	1 cut(s)	23
EcoT14I	CCWWGG	2 cut(s)	210, 453
EcoT22I	ATGCAT	1 cut(s)	322
EcoT38I	GRGCYC	1 cut(s)	503
ErhI	CCWWGG	2 cut(s)	210, 453
Esp3I	CGTCTC	1 cut(s)	393
FaeI	CATG	5 cut(s)	48, 298, 380, 422, 691
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	2 cut(s)	381, 555
FatI	CATG	5 cut(s)	44, 294, 376, 418, 687
FblI	GTMKAC	1 cut(s)	824
Fnu4HI	GCNGC	3 cut(s)	183, 804, 816
FokI	GGATG	2 cut(s)	329, 502
FriOI	GRGCYC	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	183, 804, 816
FspBI	CTAG	2 cut(s)	81, 755
GlaI	GCGC	2 cut(s)	772, 802
GluI	GCNGC	3 cut(s)	183, 804, 816
HaeII	RGCGCY	1 cut(s)	774
HhaI	GCGC	2 cut(s)	773, 803
Hin1II	CATG	5 cut(s)	48, 298, 380, 422, 691
Hin6I	GCGC	2 cut(s)	771, 801
HinP1I	GCGC	2 cut(s)	771, 801
HincII	GTYRAC	1 cut(s)	463
HindII	GTYRAC	1 cut(s)	463
HindIII	AAGCTT	1 cut(s)	575
HinfI	GANTC	6 cut(s)	128, 262, 449, 586, 635, 784
HphI	GGTGA	2 cut(s)	129, 631
Hpy166II	GTNNAC	3 cut(s)	137, 463, 825
Hpy188I	TCNGA	6 cut(s)	90, 195, 340, 535, 783, 895
Hpy188III	TCNNGA	5 cut(s)	10, 266, 284, 390, 479
Hpy8I	GTNNAC	3 cut(s)	137, 463, 825
Hpy99I	CGWCG	1 cut(s)	839
HpyCH4III	ACNGT	3 cut(s)	65, 309, 485
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	8 cut(s)	16, 38, 48, 104, 320, 380, 728, 818
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 734, 812
HpyF3I	CTNAG	5 cut(s)	51, 161, 267, 344, 791
HpySE526I	ACGT	1 cut(s)	386
Hsp92II	CATG	5 cut(s)	48, 298, 380, 422, 691
HspAI	GCGC	2 cut(s)	771, 801
Kzo9I	GATC	2 cut(s)	508, 621
LmnI	GCTCC	3 cut(s)	238, 498, 506
Lsp1109I	GCAGC	3 cut(s)	169, 790, 802
LweI	GCATC	3 cut(s)	3, 307, 748
MaeI	CTAG	2 cut(s)	81, 755
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	4 cut(s)	40, 65, 435, 583
MalI	GATC	2 cut(s)	510, 623
MboI	GATC	2 cut(s)	508, 621
MboII	GAAGA	5 cut(s)	83, 155, 214, 407, 770
MhlI	GDGCHC	2 cut(s)	24, 503
MluCI	AATT	8 cut(s)	121, 189, 227, 290, 332, 425, 525, 529
MlyI	GAGTC	4 cut(s)	137, 580, 629, 793
MmeI	TCCRAC	1 cut(s)	873
MnlI	CCTC	7 cut(s)	46, 307, 361, 386, 556, 676, 832
Mph1103I	ATGCAT	1 cut(s)	322
MseI	TTAA	4 cut(s)	231, 441, 528, 626
MspR9I	CCNGG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	25
MwoI	GCNNNNNNNGC	3 cut(s)	326, 734, 812
NdeII	GATC	2 cut(s)	508, 621
NheI	GCTAGC	1 cut(s)	80
NlaIII	CATG	5 cut(s)	48, 298, 380, 422, 691
NlaIV	GGNNCC	2 cut(s)	29, 397
NmeAIII	GCCGAG	1 cut(s)	583
NmuCI	GTSAC	2 cut(s)	65, 583
NsiI	ATGCAT	1 cut(s)	322
NspI	RCATGY	1 cut(s)	48
PaeR7I	CTCGAG	2 cut(s)	390, 645
PctI	GAATGC	1 cut(s)	84
PfeI	GAWTC	2 cut(s)	262, 449
PflMI	CCANNNNNTGG	1 cut(s)	146
PkrI	GCNGC	3 cut(s)	184, 805, 817
PleI	GAGTC	4 cut(s)	136, 580, 629, 792
PpsI	GAGTC	4 cut(s)	136, 580, 629, 792
PpuMI	RGGWCCY	1 cut(s)	395
PshBI	ATTAAT	1 cut(s)	528
Psp124BI	GAGCTC	1 cut(s)	503
Psp5II	RGGWCCY	1 cut(s)	395
Psp6I	CCWGG	1 cut(s)	23
PspGI	CCWGG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	29, 397
PspPI	GGNCC	2 cut(s)	27, 395
PspPPI	RGGWCCY	1 cut(s)	395
PspXI	VCTCGAGB	1 cut(s)	645
SacI	GAGCTC	1 cut(s)	503
SaqAI	TTAA	4 cut(s)	231, 441, 528, 626
SatI	GCNGC	3 cut(s)	183, 804, 816
Sau3AI	GATC	2 cut(s)	508, 621
Sau96I	GGNCC	2 cut(s)	27, 395
SchI	GAGTC	4 cut(s)	137, 580, 629, 793
ScrFI	CCNGG	1 cut(s)	25
SduI	GDGCHC	2 cut(s)	24, 503
SfaNI	GCATC	3 cut(s)	3, 307, 748
SfcI	CTRYAG	1 cut(s)	639
Sfr274I	CTCGAG	2 cut(s)	390, 645
SinI	GGWCC	2 cut(s)	27, 395
SlaI	CTCGAG	2 cut(s)	390, 645
SmlI	CTYRAG	5 cut(s)	8, 152, 390, 565, 645
SmoI	CTYRAG	5 cut(s)	8, 152, 390, 565, 645
Sse9I	AATT	8 cut(s)	121, 189, 227, 290, 332, 425, 525, 529
SsiI	CCGC	3 cut(s)	329, 677, 737
SspMI	CTAG	2 cut(s)	81, 755
SstI	GAGCTC	1 cut(s)	503
StyD4I	CCNGG	1 cut(s)	23
StyI	CCWWGG	2 cut(s)	210, 453
TaaI	ACNGT	3 cut(s)	65, 309, 485
TaiI	ACGT	1 cut(s)	389
TaqI	TCGA	2 cut(s)	391, 646
TasI	AATT	8 cut(s)	121, 189, 227, 290, 332, 425, 525, 529
TfiI	GAWTC	2 cut(s)	262, 449
Tru1I	TTAA	4 cut(s)	231, 441, 528, 626
Tru9I	TTAA	4 cut(s)	231, 441, 528, 626
TscAI	CASTG	3 cut(s)	55, 70, 314
TseFI	GTSAC	2 cut(s)	65, 583
TseI	GCWGC	3 cut(s)	182, 803, 815
Tsp45I	GTSAC	2 cut(s)	65, 583
TspDTI	ATGAA	3 cut(s)	17, 283, 407
TspRI	CASTG	3 cut(s)	55, 70, 314
Van91I	CCANNNNNTGG	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	27, 395
VspI	ATTAAT	1 cut(s)	528
XapI	RAATTY	4 cut(s)	189, 227, 332, 425
XceI	RCATGY	1 cut(s)	48
XhoI	CTCGAG	2 cut(s)	390, 645
XmiI	GTMKAC	1 cut(s)	824
XspI	CTAG	2 cut(s)	81, 755
Zsp2I	ATGCAT	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.