Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8210254.1

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

32 .. 589

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8210254.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ctgtctcgttttgagggttctggtgccaacacatctcaagattcgcaatcaaaagttattcttcacaagaattgctcctcccatcagccaccggtcaatattgtttttgaaaattttgctcatgtcaaatctacggaaattgaccgcacggaaaactccgatgatcagccatccttgttgactgctgaaggtggtagtgcctcaccccctgtggaaaacttcagtcctaaagcttctgtggatcatagttccagagactccccgttgttgtctgtgatttttagattggactctgttgctagagtatctatgttgagaaaacgcataaaggcagcagaggacaccagcacactgtcaagggatgattgcctgtggctatttgcgctgtgtgcagtagttgatactccactggatgctgacaccagtgcttctgtgcggagtctgctaaggaagtgtgctgcattgcgagctacaaaatctacagttgacgatgagttgataatgttgaatattcttgccacaatatcaggtagatatttcgggcagtcagaaaactga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

185

Amino Acids

20.11

Weight (kDa)

5.56

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	23
AciI	CCGC	2 cut(s)	145, 436
AclWI	GGATC	1 cut(s)	249
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	205, 207
AgeI	ACCGGT	1 cut(s)	91
AgsI	TTSAA	2 cut(s)	110, 508
AluBI	AGCT	2 cut(s)	233, 470
AluI	AGCT	2 cut(s)	233, 470
Alw26I	GTCTC	2 cut(s)	9, 249
AlwI	GGATC	1 cut(s)	249
ApeKI	GCWGC	2 cut(s)	332, 458
ApoI	RAATTY	1 cut(s)	112
AsiGI	ACCGGT	1 cut(s)	91
AspLEI	GCGC	1 cut(s)	385
AsuHPI	GGTGA	1 cut(s)	195
BanI	GGYRCC	1 cut(s)	23
BbvI	GCAGC	2 cut(s)	344, 445
BccI	CCATC	2 cut(s)	90, 178
BclI	TGATCA	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	9, 249
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	1 cut(s)	480
BisI	GCNGC	2 cut(s)	333, 459
BlsI	GCNGC	2 cut(s)	334, 460
BmiI	GGNNCC	1 cut(s)	25
BmsI	GCATC	1 cut(s)	403
Bpu10I	CCTNAGC	1 cut(s)	446
BpuEI	CTTGAG	1 cut(s)	21
BsaWI	WCCGGW	1 cut(s)	91
Bse118I	RCCGGY	1 cut(s)	91
Bse1I	ACTGG	2 cut(s)	414, 423
Bse3DI	GCAATG	1 cut(s)	461
BseGI	GGATG	3 cut(s)	170, 367, 418
BseMI	GCAATG	1 cut(s)	461
BseNI	ACTGG	2 cut(s)	414, 423
BseRI	GAGGAG	1 cut(s)	67
BseXI	GCAGC	2 cut(s)	344, 445
BsgI	GTGCAG	1 cut(s)	411
BshNI	GGYRCC	1 cut(s)	23
BshTI	ACCGGT	1 cut(s)	91
BsiSI	CCGG	1 cut(s)	92
BsmAI	GTCTC	2 cut(s)	9, 249
Bsp143I	GATC	2 cut(s)	163, 241
BspACI	CCGC	2 cut(s)	145, 436
BspLI	GGNNCC	1 cut(s)	25
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	1 cut(s)	23
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	91
BsrI	ACTGG	2 cut(s)	414, 423
BssAI	RCCGGY	1 cut(s)	91
BssMI	GATC	2 cut(s)	163, 241
Bst4CI	ACNGT	2 cut(s)	354, 484
BstC8I	GCNNGC	1 cut(s)	468
BstDEI	CTNAG	1 cut(s)	446
BstF5I	GGATG	3 cut(s)	170, 367, 418
BstHHI	GCGC	1 cut(s)	385
BstKTI	GATC	2 cut(s)	166, 244
BstMAI	GTCTC	2 cut(s)	9, 249
BstMBI	GATC	2 cut(s)	163, 241
BstMWI	GCNNNNNNNGC	4 cut(s)	382, 389, 442, 467
BstSFI	CTRYAG	1 cut(s)	480
BstV1I	GCAGC	2 cut(s)	344, 445
BtsCI	GGATG	3 cut(s)	170, 367, 418
BtsIMutI	CAGTG	3 cut(s)	350, 407, 430
Cac8I	GCNNGC	1 cut(s)	468
CfoI	GCGC	1 cut(s)	385
Cfr10I	RCCGGY	1 cut(s)	91
CspAI	ACCGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	5 cut(s)	88, 169, 233, 376, 470
CviKI_1	RGCY	5 cut(s)	88, 169, 233, 376, 470
DdeI	CTNAG	1 cut(s)	446
DpnI	GATC	2 cut(s)	165, 243
DpnII	GATC	2 cut(s)	163, 241
Eco57I	CTGAAG	2 cut(s)	205, 207
FaeI	CATG	1 cut(s)	125
FaiI	YATR	4 cut(s)	123, 246, 311, 326
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FatI	CATG	1 cut(s)	121
FbaI	TGATCA	1 cut(s)	163
Fnu4HI	GCNGC	2 cut(s)	333, 459
FokI	GGATG	3 cut(s)	157, 374, 425
Fsp4HI	GCNGC	2 cut(s)	333, 459
FspBI	CTAG	1 cut(s)	300
GlaI	GCGC	1 cut(s)	384
GluI	GCNGC	2 cut(s)	333, 459
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	1 cut(s)	385
Hin1II	CATG	1 cut(s)	125
Hin6I	GCGC	1 cut(s)	383
HinP1I	GCGC	1 cut(s)	383
HincII	GTYRAC	2 cut(s)	180, 487
HindII	GTYRAC	2 cut(s)	180, 487
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	4 cut(s)	41, 257, 290, 439
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	1 cut(s)	195
Hpy166II	GTNNAC	2 cut(s)	180, 487
Hpy188I	TCNGA	2 cut(s)	160, 550
Hpy188III	TCNNGA	2 cut(s)	38, 252
Hpy8I	GTNNAC	2 cut(s)	180, 487
HpyAV	CCTTC	1 cut(s)	182
HpyCH4III	ACNGT	2 cut(s)	354, 484
HpyCH4V	TGCA	2 cut(s)	392, 461
HpyF10VI	GCNNNNNNNGC	4 cut(s)	382, 389, 442, 467
HpyF3I	CTNAG	1 cut(s)	446
Hsp92II	CATG	1 cut(s)	125
HspAI	GCGC	1 cut(s)	383
Ksp22I	TGATCA	1 cut(s)	163
Kzo9I	GATC	2 cut(s)	163, 241
LmnI	GCTCC	1 cut(s)	80
LpnPI	CCDG	9 cut(s)	6, 105, 222, 265, 358, 383, 395, 436, 513
Lsp1109I	GCAGC	2 cut(s)	344, 445
LweI	GCATC	1 cut(s)	403
MaeI	CTAG	1 cut(s)	300
MalI	GATC	2 cut(s)	165, 243
MboI	GATC	2 cut(s)	163, 241
MboII	GAAGA	1 cut(s)	53
MluCI	AATT	3 cut(s)	70, 112, 138
MlyI	GAGTC	3 cut(s)	251, 284, 448
MnlI	CCTC	4 cut(s)	7, 88, 211, 331
MspI	CCGG	1 cut(s)	92
MwoI	GCNNNNNNNGC	4 cut(s)	382, 389, 442, 467
NdeII	GATC	2 cut(s)	163, 241
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	25
PfeI	GAWTC	1 cut(s)	41
PinAI	ACCGGT	1 cut(s)	91
PkrI	GCNGC	2 cut(s)	334, 460
PleI	GAGTC	3 cut(s)	251, 284, 447
PpsI	GAGTC	3 cut(s)	251, 284, 447
PspN4I	GGNNCC	1 cut(s)	25
SatI	GCNGC	2 cut(s)	333, 459
Sau3AI	GATC	2 cut(s)	163, 241
SchI	GAGTC	3 cut(s)	251, 284, 448
SetI	ASST	4 cut(s)	193, 235, 472, 532
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	36
SmoI	CTYRAG	1 cut(s)	36
Sse9I	AATT	3 cut(s)	70, 112, 138
SsiI	CCGC	2 cut(s)	145, 436
SspI	AATATT	2 cut(s)	100, 511
SspMI	CTAG	1 cut(s)	300
TaaI	ACNGT	2 cut(s)	354, 484
TasI	AATT	3 cut(s)	70, 112, 138
TfiI	GAWTC	1 cut(s)	41
TscAI	CASTG	3 cut(s)	357, 414, 430
TseI	GCWGC	2 cut(s)	332, 458
TspGWI	ACGGA	2 cut(s)	149, 164
TspRI	CASTG	3 cut(s)	357, 414, 430
XapI	RAATTY	1 cut(s)	112
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.