Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

2881494 .. 2888123

Gene Structure 6630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g03120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2391 bp

ATGATGAGTTGGGCTTGGGCTTGGGTTGAGTTGTCTGGGCTTGGGTTGGAAAATGTCCCGGAGATTCAATTACACACATTACATGCTTCATCGCTCCTCAGAAACGAACCTTTTAACACACTCTCTCTCTCTCTCTCTCTCCATCTCTCTTCGTCCCCAAAGCTATTCTCTTCTCCCCTTCTCTGTCCATTTCTCTCTGTCCCCAAAGCTATGGCAGATGATATGGATTCCGATACATGCGTCGGCTTTAAGCGAACAATCAAAGATTCCGAAGAAACCCAAACTCTCCCGCAACACTCTGATTCTCCGTCTGCAATTCCAGAACAGGATAGGCACTCGTCTGAGATCGTTTCTCCTCTGAAACAAGACACAGACTTCATTGACCAGAGCTCTCCTTGTTTGGTCTCCGAGTCCTCCAAGAAGGACAAGAGTTCACCTCACGGCCAAGTCTCTGAGATTCATCTTGAAGAACTTCAAGAAATTGCCAATTCTGCGGATGAAAAGCTTGTATCTTTGAATTTCGTTTCTGGGTTTCCTGCATCTGATGGAGTTGCCCAAGATTTCATGGGAAATTGCGAGGTGTGTCTTGTTTCTGATGGTGAATTAGTGACAACTGAGACTGCAAAGACTCTGGATGATGAAAAGAAGGGTGAACGCGAAGTGGGTTTCTCTGGGATTCGAATGTTGATGCAAGAAACGGAGTCTGCAACTGAGTATTTTGAAAAAGCAGTGGAATCTCAGAGCTCCCTGGAAGCAAAGAAGAAGCAATTACTGGAGGAAGTGGAAGCAATTCTTGCGCCTGCAGAGAAGGCGCAGGTGAAAACTGCTGCTGATGGGTCTGTCGGTTCTTTCAAGATTGAAGTAATTGATGATACTGCATTGATGATACTGCCTGGCAATGGCCGTGGAAAGGAGTTGGGTTTTGCACAGAGGAATGGAAACAAGAATGCAAAGCAAGAAATGAATGGGAAAAAAGCAAGAGCTGCAGCGCGAAAGGAAAAGTTGGCAAATCGTCTGGTTGAAGCTCGTAGCCTGAGTTTAGAGAAAGAGAAAGGAACCAAGATCAGTTACTCGAGGAAGGAGTTGGAGGCCATGAGGTTTGTCGATGTGGGGGAAAAGGAAAAAGTGGCGAATTGTTTGGTTGAAGCTAGTAGCCTGAGTTTCGAGAAAGGGAAAGGAACCAAGATCAGTTACTCGAGGCAGGAGTTGGAGGCCATGAGGTATGTCAATGTGGTGGAACAGAAGAAACTGTGGAAGGATATATACAGTGGCCTTGGGCCAGTCGTGGCAAAGGAGTATGATGATATGGCAAGTGCTAAGCAACAGAAGAACACCCACAATAACTTTGAGCATCGCAAACGCTTTGAGAAGATGGAAGCGGGACCTGGTATTCTTGGAGAATCATTTTTGGAAGATGTGGACATTGAATTAGAAAACTTGGTGAATAATGAAACTCAAGATGCAAGTGCCCCGGACCCTTTTTGCAGTTACAGTGCTACTGATGAAGATGGCCACCCATTTCAAGAAAAAGAGTGCACTGAGGATTATGACAGTGACGAAGATTATGCTAGCATTCAGAGACCTGCCTTTGCAGTTGATGGAGAACCCAATTTTGAGTCTGGTTCACCAGAAGATGGACTTGAGTATCTTAGGCGTGTCAGGTGGGAAGCTGCCCAAATTCCAAAAGTGAAGATAGCCAAGGTTGATAGAAGTAAATTTAACAAGGAGCAGAGTGCTTATATGCCCAAGATTCCTGAGATTGCCAAGTGTCCAGAACAATTGATGCCCCTGAAACAGTGGGAGGATGCATTTCTTGCGGAATTTTCAGAGCTAAGGCTGGCTCTGTCTGGTCTTGAGGGTTCTCATGCAAGCACGTCTCGAGGTCCCCAATCAAACATTATTCTTCATGGAAAATTTGAAAATTTACTTAATGTAGAATCCAATGAAGTTGACTTCCACTGGCCTCAGGACCGTTCCATCGTTGGGAGCTCCACAGATCAGCCATCCTTGTCAATTAATTCAGGAAGTAATGCCTCACTTCCTACCGAGAACTCAAGTCCCAAGCCTCGTGTGACTCAAAGTTCCAGCGACACCCCCTTGTTGTCGGCGATCTTAAAAATGGACTCTGTAGCTCGAGTGTCGATGTTGAGAAAACGCATAAAAGCGGCAGAGGACATGAGCACTCTGTCAAGGAATGAATGCCTGTGGCTATTTGCACTGTGTGCGGTAGTTGATACGCCACTAGATGCTGATACCAGCGCTTCTCTTCGGAGTCTGCTTAGGAAGTGCGCTGCCTTGCGAGCTGCAAAGTCTACACTTGACGACGAGGCAGTAATGCTGAACATTCTTGCCACGATTTCAGGTAGATATTTCGGGCAGTCGGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

797

Amino Acids

87.92

Weight (kDa)

4.96

Isoelectric Point (pI)

52.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIP1	PF04938	535 - 794	3.1e-46	Survival motor neuron (SMN) interacting protein 1 (SIP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	805
Acc36I	ACCTGC	2 cut(s)	805, 1591
AccB7I	CCANNNNNTGG	1 cut(s)	1634
AccI	GTMKAC	1 cut(s)	2312
AccII	CGCG	2 cut(s)	657, 991
AciI	CCGC	6 cut(s)	290, 494, 1379, 1817, 2165, 2225
AcoI	YGGCCR	3 cut(s)	442, 901, 1510
AcsI	RAATTY	6 cut(s)	517, 1677, 1715, 1820, 1913, 1921
AdeI	CACNNNGTG	1 cut(s)	2222
AfeI	AGCGCT	1 cut(s)	2260
AfiI	CCNNNNNNNGG	4 cut(s)	899, 910, 1634, 1983
AjiI	CACGTC	1 cut(s)	1875
AjnI	CCWGG	3 cut(s)	747, 892, 1384
Alw21I	GWGCWC	5 cut(s)	392, 746, 1538, 1991, 2183
Alw26I	GTCTC	5 cut(s)	409, 454, 611, 1573, 1881
Alw44I	GTGCAC	1 cut(s)	1534
Ama87I	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
Aor51HI	AGCGCT	1 cut(s)	2260
AoxI	GGCC	8 cut(s)	442, 901, 1089, 1212, 1270, 1277, 1510, 1961
ApaLI	GTGCAC	1 cut(s)	1534
ApeKI	GCWGC	6 cut(s)	827, 983, 986, 1670, 2291, 2303
ApoI	RAATTY	6 cut(s)	517, 1677, 1715, 1820, 1913, 1921
AseI	ATTAAT	1 cut(s)	2016
Asp700I	GAANNNNTTC	2 cut(s)	471, 789
AspLEI	GCGC	5 cut(s)	799, 814, 991, 2261, 2291
AspS9I	GGNCC	5 cut(s)	1277, 1382, 1474, 1883, 1969
AsuC2I	CCSGG	2 cut(s)	59, 1472
AsuHPI	GGTGA	6 cut(s)	426, 611, 662, 829, 1453, 1617
AsuII	TTCGAA	1 cut(s)	679
AsuNHI	GCTAGC	1 cut(s)	1568
AvaI	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
AvaII	GGWCC	4 cut(s)	1382, 1474, 1883, 1969
AxyI	CCTNAGG	1 cut(s)	1965
BaeGI	GKGCMC	2 cut(s)	1471, 1538
BaeI	ACNNNNGTAYC	4 cut(s)	225, 258, 1628, 1661
BalI	TGGCCA	1 cut(s)	1512
BanII	GRGCYC	3 cut(s)	392, 746, 1991
BarI	GAAGNNNNNNTAC	2 cut(s)	1247, 1279
BauI	CACGAG	1 cut(s)	2067
Bbv12I	GWGCWC	5 cut(s)	392, 746, 1538, 1991, 2183
BbvI	GCAGC	6 cut(s)	814, 970, 998, 1657, 2278, 2290
BceAI	ACGGC	2 cut(s)	457, 888
BcgI	CGANNNNNNTGC	2 cut(s)	1547, 1581
BciT130I	CCWGG	3 cut(s)	749, 894, 1386
BcnI	CCSGG	2 cut(s)	59, 1472
BcoDI	GTCTC	5 cut(s)	409, 454, 611, 1573, 1881
BfaI	CTAG	3 cut(s)	1149, 1569, 2243
BfmI	CTRYAG	3 cut(s)	801, 984, 2127
BfoI	RGCGCY	1 cut(s)	2262
BfuAI	ACCTGC	2 cut(s)	805, 1591
BisI	GCNGC	7 cut(s)	828, 984, 987, 1671, 2166, 2292, 2304
BlpI	GCTNAGC	1 cut(s)	1317
BlsI	GCNGC	7 cut(s)	829, 985, 988, 1672, 2167, 2293, 2305
Bme1390I	CCNGG	5 cut(s)	59, 749, 894, 1386, 1472
Bme18I	GGWCC	4 cut(s)	1382, 1474, 1883, 1969
BmeT110I	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
BmgBI	CACGTC	1 cut(s)	1875
BmgT120I	GGNCC	5 cut(s)	1277, 1382, 1474, 1883, 1969
BmiI	GGNNCC	5 cut(s)	1057, 1180, 1383, 1476, 1885
BmrFI	CCNGG	5 cut(s)	59, 749, 894, 1386, 1472
BmsI	GCATC	7 cut(s)	548, 678, 1360, 1450, 1773, 1795, 2236
BmtI	GCTAGC	1 cut(s)	1572
BplI	GAGNNNNNCTC	2 cut(s)	421, 453
BpmI	CTGGAG	1 cut(s)	794
Bpu10I	CCTNAGC	2 cut(s)	1832, 2279
Bpu1102I	GCTNAGC	1 cut(s)	1317
Bpu14I	TTCGAA	1 cut(s)	679
BpuEI	CTTGAG	4 cut(s)	1440, 1661, 1874, 2038
BpuMI	CCSGG	2 cut(s)	59, 1472
BsaI	GGTCTC	2 cut(s)	409, 1573
BsaJI	CCNNGG	5 cut(s)	747, 904, 1273, 1470, 1698
Bsc4I	CCNNNNNNNGG	4 cut(s)	899, 910, 1634, 1983
Bse1I	ACTGG	3 cut(s)	777, 1280, 1964
Bse21I	CCTNAGG	1 cut(s)	1965
Bse3DI	GCAATG	1 cut(s)	904
BseBI	CCWGG	3 cut(s)	749, 894, 1386
BseDI	CCNNGG	5 cut(s)	747, 904, 1273, 1470, 1698
BseGI	GGATG	4 cut(s)	502, 640, 1810, 2003
BseLI	CCNNNNNNNGG	4 cut(s)	899, 910, 1634, 1983
BseMI	GCAATG	1 cut(s)	904
BseNI	ACTGG	3 cut(s)	777, 1280, 1964
BseRI	GAGGAG	2 cut(s)	86, 345
BseSI	GKGCMC	2 cut(s)	1471, 1538
BseXI	GCAGC	6 cut(s)	814, 970, 998, 1657, 2278, 2290
Bsh1236I	CGCG	2 cut(s)	657, 991
BshFI	GGCC	8 cut(s)	444, 903, 1091, 1214, 1272, 1279, 1512, 1963
BsiHKAI	GWGCWC	5 cut(s)	392, 746, 1538, 1991, 2183
BsiHKCI	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
BsiSI	CCGG	2 cut(s)	59, 1472
BslFI	GGGAC	6 cut(s)	41, 139, 185, 1395, 1869, 2043
BslI	CCNNNNNNNGG	4 cut(s)	899, 910, 1634, 1983
BsmAI	GTCTC	5 cut(s)	409, 454, 611, 1573, 1881
BsmBI	CGTCTC	1 cut(s)	1881
BsmFI	GGGAC	6 cut(s)	41, 139, 185, 1395, 1869, 2043
BsmI	GAATGC	3 cut(s)	952, 1572, 2204
BsnI	GGCC	8 cut(s)	444, 903, 1091, 1214, 1272, 1279, 1512, 1963
Bso31I	GGTCTC	2 cut(s)	409, 1573
BsoBI	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
Bsp119I	TTCGAA	1 cut(s)	679
Bsp1286I	GDGCHC	6 cut(s)	392, 746, 1471, 1538, 1991, 2183
Bsp143I	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
Bsp1720I	GCTNAGC	1 cut(s)	1317
BspACI	CCGC	6 cut(s)	290, 494, 1379, 1817, 2165, 2225
BspANI	GGCC	8 cut(s)	444, 903, 1091, 1214, 1272, 1279, 1512, 1963
BspFNI	CGCG	2 cut(s)	657, 991
BspLI	GGNNCC	5 cut(s)	1057, 1180, 1383, 1476, 1885
BspMAI	CTGCAG	2 cut(s)	805, 988
BspMI	ACCTGC	2 cut(s)	805, 1591
BspOI	GCTAGC	1 cut(s)	1572
BspT104I	TTCGAA	1 cut(s)	679
BspTNI	GGTCTC	2 cut(s)	409, 1573
BsrDI	GCAATG	1 cut(s)	904
BsrI	ACTGG	3 cut(s)	777, 1280, 1964
BssECI	CCNNGG	5 cut(s)	747, 904, 1273, 1470, 1698
BssMI	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
BssSI	CACGAG	1 cut(s)	2067
BssT1I	CCWWGG	2 cut(s)	1273, 1698
Bst2BI	CACGAG	1 cut(s)	2067
Bst2UI	CCWGG	3 cut(s)	749, 894, 1386
Bst4CI	ACNGT	7 cut(s)	1251, 1268, 1493, 1553, 1797, 1973, 2220
Bst6I	CTCTTC	3 cut(s)	154, 175, 2271
BstAPI	GCANNNNNTGC	4 cut(s)	794, 983, 1814, 2222
BstBI	TTCGAA	1 cut(s)	679
BstC8I	GCNNGC	5 cut(s)	801, 1570, 1839, 1870, 2301
BstDSI	CCRYGG	1 cut(s)	904
BstF5I	GGATG	4 cut(s)	502, 640, 1810, 2003
BstFNI	CGCG	2 cut(s)	657, 991
BstH2I	RGCGCY	1 cut(s)	2262
BstHHI	GCGC	5 cut(s)	799, 814, 991, 2261, 2291
BstKTI	GATC	5 cut(s)	348, 1065, 1188, 1999, 2112
BstMAI	GTCTC	5 cut(s)	409, 454, 611, 1573, 1881
BstMBI	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
BstMWI	GCNNNNNNNGC	7 cut(s)	491, 794, 809, 983, 1814, 2222, 2300
BstNI	CCWGG	3 cut(s)	749, 894, 1386
BstNSI	RCATGY	2 cut(s)	86, 240
BstSCI	CCNGG	5 cut(s)	57, 747, 892, 1384, 1470
BstSFI	CTRYAG	3 cut(s)	801, 984, 2127
BstSLI	GKGCMC	2 cut(s)	1471, 1538
BstUI	CGCG	2 cut(s)	657, 991
BstV1I	GCAGC	6 cut(s)	814, 970, 998, 1657, 2278, 2290
BstXI	CCANNNNNNTGG	1 cut(s)	211
Bsu36I	CCTNAGG	1 cut(s)	1965
BsuRI	GGCC	8 cut(s)	444, 903, 1091, 1214, 1272, 1279, 1512, 1963
BtgI	CCRYGG	1 cut(s)	904
BtgZI	GCGATG	2 cut(s)	75, 1337
BtrI	CACGTC	1 cut(s)	1875
BtsCI	GGATG	4 cut(s)	502, 640, 1810, 2003
BtsI	GCAGTG	1 cut(s)	735
BtsIMutI	CAGTG	8 cut(s)	735, 1273, 1498, 1536, 1558, 1802, 1957, 2216
BveI	ACCTGC	2 cut(s)	805, 1591
Cac8I	GCNNGC	5 cut(s)	801, 1570, 1839, 1870, 2301
CfoI	GCGC	5 cut(s)	799, 814, 991, 2261, 2291
Cfr13I	GGNCC	5 cut(s)	1277, 1382, 1474, 1883, 1969
CseI	GACGC	1 cut(s)	229
CsiI	ACCWGGT	1 cut(s)	1384
CspCI	CAANNNNNGTGG	2 cut(s)	886, 921
CviAII	CATG	8 cut(s)	83, 237, 565, 1093, 1216, 1865, 1907, 2176
DpnI	GATC	5 cut(s)	347, 1064, 1187, 1998, 2111
DpnII	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
DraIII	CACNNNGTG	1 cut(s)	2222
EaeI	YGGCCR	3 cut(s)	442, 901, 1510
Eam1104I	CTCTTC	3 cut(s)	154, 175, 2271
EarI	CTCTTC	3 cut(s)	154, 175, 2271
Ecl136II	GAGCTC	3 cut(s)	390, 744, 1989
Eco130I	CCWWGG	2 cut(s)	1273, 1698
Eco24I	GRGCYC	3 cut(s)	392, 746, 1991
Eco31I	GGTCTC	2 cut(s)	409, 1573
Eco47I	GGWCC	4 cut(s)	1382, 1474, 1883, 1969
Eco47III	AGCGCT	1 cut(s)	2260
Eco53kI	GAGCTC	3 cut(s)	390, 744, 1989
Eco81I	CCTNAGG	1 cut(s)	1965
Eco88I	CYCGRG	4 cut(s)	1072, 1195, 1878, 2133
EcoICRI	GAGCTC	3 cut(s)	390, 744, 1989
EcoO109I	RGGNCCY	2 cut(s)	1382, 1883
EcoRII	CCWGG	3 cut(s)	747, 892, 1384
EcoT14I	CCWWGG	2 cut(s)	1273, 1698
EcoT22I	ATGCAT	1 cut(s)	1810
EcoT38I	GRGCYC	3 cut(s)	392, 746, 1991
ErhI	CCWWGG	2 cut(s)	1273, 1698
Esp3I	CGTCTC	1 cut(s)	1881
FaeI	CATG	8 cut(s)	86, 240, 568, 1096, 1219, 1868, 1910, 2179
FalI	AAGNNNNNCTT	4 cut(s)	777, 809, 1623, 1655
FaqI	GGGAC	6 cut(s)	41, 139, 185, 1395, 1869, 2043
FatI	CATG	8 cut(s)	82, 236, 564, 1092, 1215, 1864, 1906, 2175
FauI	CCCGC	2 cut(s)	297, 1372
FblI	GTMKAC	1 cut(s)	2312
Fnu4HI	GCNGC	7 cut(s)	828, 984, 987, 1671, 2166, 2292, 2304
FokI	GGATG	4 cut(s)	509, 647, 1817, 1990
FriOI	GRGCYC	3 cut(s)	392, 746, 1991
Fsp4HI	GCNGC	7 cut(s)	828, 984, 987, 1671, 2166, 2292, 2304
FspBI	CTAG	3 cut(s)	1149, 1569, 2243
GlaI	GCGC	5 cut(s)	798, 813, 990, 2260, 2290
GluI	GCNGC	7 cut(s)	828, 984, 987, 1671, 2166, 2292, 2304
GsuI	CTGGAG	1 cut(s)	794
HaeII	RGCGCY	1 cut(s)	2262
HaeIII	GGCC	8 cut(s)	444, 903, 1091, 1214, 1272, 1279, 1512, 1963
HapII	CCGG	2 cut(s)	59, 1472
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	5 cut(s)	799, 814, 991, 2261, 2291
Hin1II	CATG	8 cut(s)	86, 240, 568, 1096, 1219, 1868, 1910, 2179
Hin6I	GCGC	5 cut(s)	797, 812, 989, 2259, 2289
HinP1I	GCGC	5 cut(s)	797, 812, 989, 2259, 2289
HincII	GTYRAC	1 cut(s)	1951
HindII	GTYRAC	1 cut(s)	1951
HindIII	AAGCTT	1 cut(s)	503
HpaII	CCGG	2 cut(s)	59, 1472
HphI	GGTGA	6 cut(s)	426, 611, 662, 829, 1453, 1617
Hpy166II	GTNNAC	7 cut(s)	434, 653, 1420, 1536, 1625, 1951, 2313
Hpy8I	GTNNAC	7 cut(s)	434, 653, 1420, 1536, 1625, 1951, 2313
Hpy99I	CGWCG	2 cut(s)	245, 2327
HpyAV	CCTTC	6 cut(s)	188, 415, 640, 802, 1072, 1249
HpyCH4III	ACNGT	7 cut(s)	1251, 1268, 1493, 1553, 1797, 1973, 2220
HpyCH4IV	ACGT	1 cut(s)	1874
HpyF10VI	GCNNNNNNNGC	7 cut(s)	491, 794, 809, 983, 1814, 2222, 2300
HpySE526I	ACGT	1 cut(s)	1874
Hsp92II	CATG	8 cut(s)	86, 240, 568, 1096, 1219, 1868, 1910, 2179
HspAI	GCGC	5 cut(s)	797, 812, 989, 2259, 2289
Kzo9I	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
LmnI	GCTCC	5 cut(s)	99, 749, 1726, 1986, 1994
Lsp1109I	GCAGC	6 cut(s)	814, 970, 998, 1657, 2278, 2290
LweI	GCATC	7 cut(s)	548, 678, 1360, 1450, 1773, 1795, 2236
MabI	ACCWGGT	1 cut(s)	1384
MaeI	CTAG	3 cut(s)	1149, 1569, 2243
MaeII	ACGT	1 cut(s)	1874
MaeIII	GTNAC	6 cut(s)	607, 1067, 1190, 1487, 1553, 2071
MalI	GATC	5 cut(s)	347, 1064, 1187, 1998, 2111
MboI	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
MfeI	CAATTG	1 cut(s)	1778
MhlI	GDGCHC	6 cut(s)	392, 746, 1471, 1538, 1991, 2183
MlsI	TGGCCA	1 cut(s)	1512
MluNI	TGGCCA	1 cut(s)	1512
MlyI	GAGTC	7 cut(s)	419, 622, 710, 1625, 2068, 2117, 2281
MmeI	TCCRAC	4 cut(s)	27, 1065, 1188, 2361
Mox20I	TGGCCA	1 cut(s)	1512
Mph1103I	ATGCAT	1 cut(s)	1810
MroXI	GAANNNNTTC	2 cut(s)	471, 789
MscI	TGGCCA	1 cut(s)	1512
MseI	TTAA	6 cut(s)	114, 249, 1719, 1929, 2016, 2114
Msp20I	TGGCCA	1 cut(s)	1512
MspI	CCGG	2 cut(s)	59, 1472
MspR9I	CCNGG	5 cut(s)	59, 749, 894, 1386, 1472
MunI	CAATTG	1 cut(s)	1778
Mva1269I	GAATGC	3 cut(s)	952, 1572, 2204
MvaI	CCWGG	3 cut(s)	749, 894, 1386
MvnI	CGCG	2 cut(s)	657, 991
MwoI	GCNNNNNNNGC	7 cut(s)	491, 794, 809, 983, 1814, 2222, 2300
NciI	CCSGG	2 cut(s)	59, 1472
NdeII	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
NheI	GCTAGC	1 cut(s)	1568
NlaIII	CATG	8 cut(s)	86, 240, 568, 1096, 1219, 1868, 1910, 2179
NlaIV	GGNNCC	5 cut(s)	1057, 1180, 1383, 1476, 1885
NmuCI	GTSAC	3 cut(s)	607, 1553, 2071
NsiI	ATGCAT	1 cut(s)	1810
NspI	RCATGY	2 cut(s)	86, 240
NspV	TTCGAA	1 cut(s)	679
PaeR7I	CTCGAG	4 cut(s)	1072, 1195, 1878, 2133
PaqCI	CACCTGC	1 cut(s)	805
PctI	GAATGC	3 cut(s)	952, 1572, 2204
PdmI	GAANNNNTTC	2 cut(s)	471, 789
PflMI	CCANNNNNTGG	1 cut(s)	1634
PfoI	TCCNGGA	1 cut(s)	57
PkrI	GCNGC	7 cut(s)	829, 985, 988, 1672, 2167, 2293, 2305
PleI	GAGTC	7 cut(s)	418, 622, 709, 1624, 2068, 2117, 2280
PpsI	GAGTC	7 cut(s)	418, 622, 709, 1624, 2068, 2117, 2280
PpuMI	RGGWCCY	2 cut(s)	1382, 1883
PshBI	ATTAAT	1 cut(s)	2016
Psp124BI	GAGCTC	3 cut(s)	392, 746, 1991
Psp5II	RGGWCCY	2 cut(s)	1382, 1883
Psp6I	CCWGG	3 cut(s)	747, 892, 1384
PspGI	CCWGG	3 cut(s)	747, 892, 1384
PspN4I	GGNNCC	5 cut(s)	1057, 1180, 1383, 1476, 1885
PspPI	GGNCC	5 cut(s)	1277, 1382, 1474, 1883, 1969
PspPPI	RGGWCCY	2 cut(s)	1382, 1883
PspXI	VCTCGAGB	3 cut(s)	1072, 1195, 2133
PstI	CTGCAG	2 cut(s)	805, 988
SacI	GAGCTC	3 cut(s)	392, 746, 1991
SaqAI	TTAA	6 cut(s)	114, 249, 1719, 1929, 2016, 2114
SatI	GCNGC	7 cut(s)	828, 984, 987, 1671, 2166, 2292, 2304
Sau3AI	GATC	5 cut(s)	345, 1062, 1185, 1996, 2109
Sau96I	GGNCC	5 cut(s)	1277, 1382, 1474, 1883, 1969
SchI	GAGTC	7 cut(s)	419, 622, 710, 1625, 2068, 2117, 2281
ScrFI	CCNGG	5 cut(s)	59, 749, 894, 1386, 1472
SduI	GDGCHC	6 cut(s)	392, 746, 1471, 1538, 1991, 2183
SexAI	ACCWGGT	1 cut(s)	1384
SfaNI	GCATC	7 cut(s)	548, 678, 1360, 1450, 1773, 1795, 2236
SfcI	CTRYAG	3 cut(s)	801, 984, 2127
Sfr274I	CTCGAG	4 cut(s)	1072, 1195, 1878, 2133
SfuI	TTCGAA	1 cut(s)	679
SinI	GGWCC	4 cut(s)	1382, 1474, 1883, 1969
SlaI	CTCGAG	4 cut(s)	1072, 1195, 1878, 2133
SmlI	CTYRAG	8 cut(s)	1072, 1195, 1455, 1640, 1853, 1878, 2053, 2133
SmoI	CTYRAG	8 cut(s)	1072, 1195, 1455, 1640, 1853, 1878, 2053, 2133
SsiI	CCGC	6 cut(s)	290, 494, 1379, 1817, 2165, 2225
SspMI	CTAG	3 cut(s)	1149, 1569, 2243
SstI	GAGCTC	3 cut(s)	392, 746, 1991
StyD4I	CCNGG	5 cut(s)	57, 747, 892, 1384, 1470
StyI	CCWWGG	2 cut(s)	1273, 1698
TaaI	ACNGT	7 cut(s)	1251, 1268, 1493, 1553, 1797, 1973, 2220
TaiI	ACGT	1 cut(s)	1877
TaqI	TCGA	8 cut(s)	679, 1073, 1104, 1164, 1196, 1879, 2134, 2141
TauI	GCSGC	1 cut(s)	2168
Tru1I	TTAA	6 cut(s)	114, 249, 1719, 1929, 2016, 2114
Tru9I	TTAA	6 cut(s)	114, 249, 1719, 1929, 2016, 2114
TscAI	CASTG	8 cut(s)	735, 1273, 1498, 1543, 1558, 1802, 1964, 2223
TseFI	GTSAC	3 cut(s)	607, 1553, 2071
TseI	GCWGC	6 cut(s)	827, 983, 986, 1670, 2291, 2303
Tsp45I	GTSAC	3 cut(s)	607, 1553, 2071
TspGWI	ACGGA	2 cut(s)	297, 713
TspRI	CASTG	8 cut(s)	735, 1273, 1498, 1543, 1558, 1802, 1964, 2223
Van91I	CCANNNNNTGG	1 cut(s)	1634
VneI	GTGCAC	1 cut(s)	1534
VpaK11BI	GGWCC	4 cut(s)	1382, 1474, 1883, 1969
VspI	ATTAAT	1 cut(s)	2016
XapI	RAATTY	6 cut(s)	517, 1677, 1715, 1820, 1913, 1921
XceI	RCATGY	2 cut(s)	86, 240
XhoI	CTCGAG	4 cut(s)	1072, 1195, 1878, 2133
XmiI	GTMKAC	1 cut(s)	2312
XmnI	GAANNNNTTC	2 cut(s)	471, 789
XspI	CTAG	3 cut(s)	1149, 1569, 2243
Zsp2I	ATGCAT	1 cut(s)	1810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.