Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Forward (+)

29769865 .. 29774973

Gene Structure 5109 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ37876

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGCATACTTGAATGAATTACTATTATGGATGTCAACTCGAAAGCTGAAAAAGAAAAAAGAAAAACTTCGCTTACTTTGGGAATCATTAGGAAACTCGGTGAATAATGAAACCCAAGATGTCAGTCTCCTGGACCCTGTTTGCAGTTATAATGTTACTAATGAAGATGGGTATCCATTTCCAGAAAAAGAGTGCAGCGAAGATGATGACAGTGATGAAGAGTATGCTAGCATTCAGAGGCCTGCCTTTTTGGTTGAAGGAGAACCCAATTTTGATTCTGGGTCACCAGAAGATGGATTTGAGTACCTTAGGCGTGTCAGGTGGGAAGCTGCTCAAATTCCAAAAGTGAGGGTAGCCAAGGTTGATAGAAGCAAATTTAACAGAGAACAGAGTGATTATATGCCCAAAATTCCTGAGATTGCTAAATGTCCAGAACAATTGCTGCCGCTGAAACAATGGGAGGAGGCTTTTCTTGCCAATTTTTCAGATCTAAGGCTGGATCTGTCTCGTTTTGAGGGTTCTGGTGCCAACACATCTCAAGATTCGCAATCAAAAGTTATTCTTCACAAGAATTGCTCCTCCCATCAGCCACCGGTCAATATTGTTTTTGAAAATTTTGCTCATGTCAAATCTACGGAAATTGACTGCACGGAAAACTCCGATTATCAGCCATTATTGTTGACTGCTGAAGGTGGTAGTGCCTCACCCCCTGTGGAAAACTTCAGTACTAAAGCTTCTTTGGATCATAGTTCCAGAGACTCCCCGTTGTTGTCTGTGATTTTTAGATTGGACTCTGTTGCTAGAGTATCTATGTTGAGAAAACGCATAAAGGCAGCAGAGGACACCAGCACACTGTCAAGGGATGATTGCCTGTGGCTATTTGCGCTGTGTGCAGTAGTTGATACTCCACTGGATGCTGACACCAGTGCTTCTGTGCGGAGTCTGCTAAGGAAGTGTGCCGCATTGCGAGCTACAAAATCTACAGTTGACGATGAGTTAATAATGTTGAATATTCTTGCCACAATATCGGGTAGATATTTCGGGCAGTCAGAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

352

Amino Acids

39.64

Weight (kDa)

4.93

Isoelectric Point (pI)

60.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SIP1	PF04938	88 - 350	9.6e-48	Survival motor neuron (SMN) interacting protein 1 (SIP1)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	1 cut(s)	524
AccB7I	CCANNNNNTGG	1 cut(s)	293
AciI	CCGC	3 cut(s)	446, 937, 960
AclWI	GGATC	2 cut(s)	507, 750
AcsI	RAATTY	4 cut(s)	336, 374, 408, 613
AcuI	CTGAAG	2 cut(s)	706, 708
AfaI	GTAC	2 cut(s)	305, 727
AfiI	CCNNNNNNNGG	1 cut(s)	293
AgeI	ACCGGT	1 cut(s)	592
AgsI	TTSAA	4 cut(s)	13, 257, 611, 1009
AjnI	CCWGG	1 cut(s)	129
AluBI	AGCT	4 cut(s)	46, 329, 734, 971
AluI	AGCT	4 cut(s)	46, 329, 734, 971
Alw26I	GTCTC	3 cut(s)	131, 510, 750
AlwI	GGATC	2 cut(s)	507, 750
AoxI	GGCC	1 cut(s)	239
ApeKI	GCWGC	4 cut(s)	195, 329, 442, 833
ApoI	RAATTY	4 cut(s)	336, 374, 408, 613
AsiGI	ACCGGT	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	886
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	112, 276, 696
AsuNHI	GCTAGC	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	133
AxyI	CCTNAGG	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	524
BarI	GAAGNNNNNNTAC	2 cut(s)	718, 750
BbvI	GCAGC	4 cut(s)	207, 316, 429, 845
BccI	CCATC	3 cut(s)	161, 287, 591
BciT130I	CCWGG	1 cut(s)	131
BciVI	GTATCC	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	131, 510, 750
BfaI	CTAG	2 cut(s)	228, 801
BfmI	CTRYAG	1 cut(s)	981
BfuI	GTATCC	1 cut(s)	183
BglII	AGATCT	1 cut(s)	487
BisI	GCNGC	6 cut(s)	196, 330, 443, 446, 834, 960
BlsI	GCNGC	6 cut(s)	197, 331, 444, 447, 835, 961
BmcAI	AGTACT	1 cut(s)	727
Bme1390I	CCNGG	1 cut(s)	131
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	2 cut(s)	135, 526
BmrFI	CCNGG	1 cut(s)	131
BmsI	GCATC	1 cut(s)	904
BmtI	GCTAGC	1 cut(s)	231
Bpu10I	CCTNAGC	1 cut(s)	947
BpuEI	CTTGAG	1 cut(s)	522
BsaBI	GATNNNNATC	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	357
BsaWI	WCCGGW	1 cut(s)	592
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	592
Bse1I	ACTGG	2 cut(s)	915, 924
Bse21I	CCTNAGG	1 cut(s)	308
Bse3DI	GCAATG	1 cut(s)	962
Bse8I	GATNNNNATC	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	131
BseDI	CCNNGG	1 cut(s)	357
BseGI	GGATG	3 cut(s)	36, 868, 919
BseJI	GATNNNNATC	1 cut(s)	171
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	1 cut(s)	962
BseMII	CTCAG	1 cut(s)	405
BseNI	ACTGG	2 cut(s)	915, 924
BseRI	GAGGAG	2 cut(s)	476, 568
BseXI	GCAGC	4 cut(s)	207, 316, 429, 845
BsgI	GTGCAG	3 cut(s)	214, 631, 912
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	524
BshTI	ACCGGT	1 cut(s)	592
BsiSI	CCGG	1 cut(s)	593
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	3 cut(s)	131, 510, 750
BsmI	GAATGC	1 cut(s)	231
BsnI	GGCC	1 cut(s)	241
Bsp143I	GATC	3 cut(s)	487, 499, 742
BspACI	CCGC	3 cut(s)	446, 937, 960
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	406
BspLI	GGNNCC	2 cut(s)	135, 526
BspOI	GCTAGC	1 cut(s)	231
BspPI	GGATC	2 cut(s)	507, 750
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	962
BsrFI	RCCGGY	1 cut(s)	592
BsrI	ACTGG	2 cut(s)	915, 924
BssAI	RCCGGY	1 cut(s)	592
BssECI	CCNNGG	1 cut(s)	357
BssMI	GATC	3 cut(s)	487, 499, 742
BssT1I	CCWWGG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	131
Bst4CI	ACNGT	3 cut(s)	212, 855, 985
Bst6I	CTCTTC	1 cut(s)	213
BstC8I	GCNNGC	3 cut(s)	229, 243, 969
BstDEI	CTNAG	4 cut(s)	308, 414, 491, 947
BstEII	GGTNACC	1 cut(s)	282
BstF5I	GGATG	3 cut(s)	36, 868, 919
BstHHI	GCGC	1 cut(s)	886
BstKTI	GATC	3 cut(s)	490, 502, 745
BstMAI	GTCTC	3 cut(s)	131, 510, 750
BstMBI	GATC	3 cut(s)	487, 499, 742
BstMWI	GCNNNNNNNGC	5 cut(s)	473, 883, 890, 943, 968
BstNI	CCWGG	1 cut(s)	131
BstPI	GGTNACC	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	129
BstSFI	CTRYAG	1 cut(s)	981
BstV1I	GCAGC	4 cut(s)	207, 316, 429, 845
BstX2I	RGATCY	2 cut(s)	487, 499
BstYI	RGATCY	2 cut(s)	487, 499
Bsu36I	CCTNAGG	1 cut(s)	308
BsuI	GTATCC	1 cut(s)	183
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	3 cut(s)	36, 868, 919
BtsIMutI	CAGTG	4 cut(s)	217, 851, 908, 931
Cac8I	GCNNGC	3 cut(s)	229, 243, 969
CfoI	GCGC	1 cut(s)	886
Cfr10I	RCCGGY	1 cut(s)	592
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	304, 726
CspAI	ACCGGT	1 cut(s)	592
CviAII	CATG	1 cut(s)	623
CviQI	GTAC	2 cut(s)	304, 726
DdeI	CTNAG	4 cut(s)	308, 414, 491, 947
DpnI	GATC	3 cut(s)	489, 501, 744
DpnII	GATC	3 cut(s)	487, 499, 742
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
Eco130I	CCWWGG	1 cut(s)	357
Eco147I	AGGCCT	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	706, 708
Eco81I	CCTNAGG	1 cut(s)	308
Eco91I	GGTNACC	1 cut(s)	282
EcoO65I	GGTNACC	1 cut(s)	282
EcoRII	CCWGG	1 cut(s)	129
EcoT14I	CCWWGG	1 cut(s)	357
ErhI	CCWWGG	1 cut(s)	357
FaeI	CATG	1 cut(s)	626
FalI	AAGNNNNNCTT	4 cut(s)	51, 83, 546, 578
FatI	CATG	1 cut(s)	622
Fnu4HI	GCNGC	6 cut(s)	196, 330, 443, 446, 834, 960
FokI	GGATG	3 cut(s)	43, 875, 926
Fsp4HI	GCNGC	6 cut(s)	196, 330, 443, 446, 834, 960
FspBI	CTAG	2 cut(s)	228, 801
GlaI	GCGC	1 cut(s)	885
GluI	GCNGC	6 cut(s)	196, 330, 443, 446, 834, 960
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	1 cut(s)	593
HhaI	GCGC	1 cut(s)	886
Hin1II	CATG	1 cut(s)	626
Hin6I	GCGC	1 cut(s)	884
HinP1I	GCGC	1 cut(s)	884
HincII	GTYRAC	3 cut(s)	36, 681, 988
HindII	GTYRAC	3 cut(s)	36, 681, 988
HindIII	AAGCTT	1 cut(s)	732
HinfI	GANTC	6 cut(s)	83, 275, 542, 758, 791, 940
HpaII	CCGG	1 cut(s)	593
HphI	GGTGA	3 cut(s)	112, 276, 696
Hpy166II	GTNNAC	3 cut(s)	36, 681, 988
Hpy188I	TCNGA	4 cut(s)	237, 487, 661, 1051
Hpy188III	TCNNGA	5 cut(s)	182, 413, 431, 539, 753
Hpy8I	GTNNAC	3 cut(s)	36, 681, 988
HpyAV	CCTTC	2 cut(s)	251, 683
HpyCH4III	ACNGT	3 cut(s)	212, 855, 985
HpyCH4V	TGCA	4 cut(s)	144, 195, 648, 893
HpyF10VI	GCNNNNNNNGC	5 cut(s)	473, 883, 890, 943, 968
HpyF3I	CTNAG	4 cut(s)	308, 414, 491, 947
Hsp92II	CATG	1 cut(s)	626
HspAI	GCGC	1 cut(s)	884
Kzo9I	GATC	3 cut(s)	487, 499, 742
LmnI	GCTCC	1 cut(s)	581
Lsp1109I	GCAGC	4 cut(s)	207, 316, 429, 845
LweI	GCATC	1 cut(s)	904
MaeI	CTAG	2 cut(s)	228, 801
MaeIII	GTNAC	2 cut(s)	154, 282
MalI	GATC	3 cut(s)	489, 501, 744
MboI	GATC	3 cut(s)	487, 499, 742
MboII	GAAGA	5 cut(s)	176, 212, 230, 302, 554
MfeI	CAATTG	1 cut(s)	437
MflI	RGATCY	2 cut(s)	487, 499
MlyI	GAGTC	3 cut(s)	752, 785, 949
MnlI	CCTC	8 cut(s)	231, 342, 454, 457, 508, 589, 712, 832
MroXI	GAANNNNTTC	1 cut(s)	66
MseI	TTAA	2 cut(s)	378, 998
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	437
Mva1269I	GAATGC	1 cut(s)	231
MvaI	CCWGG	1 cut(s)	131
MwoI	GCNNNNNNNGC	5 cut(s)	473, 883, 890, 943, 968
NdeII	GATC	3 cut(s)	487, 499, 742
NheI	GCTAGC	1 cut(s)	227
NlaIII	CATG	1 cut(s)	626
NlaIV	GGNNCC	2 cut(s)	135, 526
NmuCI	GTSAC	1 cut(s)	282
PceI	AGGCCT	1 cut(s)	241
PctI	GAATGC	1 cut(s)	231
PdmI	GAANNNNTTC	1 cut(s)	66
PfeI	GAWTC	3 cut(s)	83, 275, 542
PflMI	CCANNNNNTGG	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	129
PinAI	ACCGGT	1 cut(s)	592
PkrI	GCNGC	6 cut(s)	197, 331, 444, 447, 835, 961
PleI	GAGTC	3 cut(s)	752, 785, 948
PpsI	GAGTC	3 cut(s)	752, 785, 948
PsiI	TTATAA	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	129
PspEI	GGTNACC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	2 cut(s)	135, 526
PspPI	GGNCC	1 cut(s)	133
PsuI	RGATCY	2 cut(s)	487, 499
RsaI	GTAC	2 cut(s)	305, 727
RsaNI	GTAC	2 cut(s)	304, 726
SaqAI	TTAA	2 cut(s)	378, 998
SatI	GCNGC	6 cut(s)	196, 330, 443, 446, 834, 960
Sau3AI	GATC	3 cut(s)	487, 499, 742
Sau96I	GGNCC	1 cut(s)	133
ScaI	AGTACT	1 cut(s)	727
SchI	GAGTC	3 cut(s)	752, 785, 949
ScrFI	CCNGG	1 cut(s)	131
SetI	ASST	8 cut(s)	48, 309, 323, 331, 363, 694, 736, 973
SfaNI	GCATC	1 cut(s)	904
SfcI	CTRYAG	1 cut(s)	981
SinI	GGWCC	1 cut(s)	133
SmlI	CTYRAG	1 cut(s)	537
SmoI	CTYRAG	1 cut(s)	537
SseBI	AGGCCT	1 cut(s)	241
SsiI	CCGC	3 cut(s)	446, 937, 960
SspI	AATATT	2 cut(s)	601, 1012
SspMI	CTAG	2 cut(s)	228, 801
StuI	AGGCCT	1 cut(s)	241
StyD4I	CCNGG	1 cut(s)	129
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	3 cut(s)	212, 855, 985
TaqI	TCGA	1 cut(s)	40
TatI	WGTACW	1 cut(s)	725
TauI	GCSGC	2 cut(s)	448, 962
TfiI	GAWTC	3 cut(s)	83, 275, 542
Tru1I	TTAA	2 cut(s)	378, 998
Tru9I	TTAA	2 cut(s)	378, 998
TscAI	CASTG	4 cut(s)	217, 858, 915, 931
TseFI	GTSAC	1 cut(s)	282
TseI	GCWGC	4 cut(s)	195, 329, 442, 833
Tsp45I	GTSAC	1 cut(s)	282
TspDTI	ATGAA	4 cut(s)	30, 123, 177, 231
TspGWI	ACGGA	2 cut(s)	650, 665
TspRI	CASTG	4 cut(s)	217, 858, 915, 931
Van91I	CCANNNNNTGG	1 cut(s)	293
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	4 cut(s)	336, 374, 408, 613
XmnI	GAANNNNTTC	1 cut(s)	66
XspI	CTAG	2 cut(s)	228, 801
ZrmI	AGTACT	1 cut(s)	727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.