Rh5AG108700
ERF Family

Beta-lactamase superfamily domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0003622
Physical Location & Seq
Reverse (-)
9982325 .. 9983243
919 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG108700.1

Sequence Viewer

Length: 387 bp
ATGATGATCTGGCAATCTCTAAGCATCAGAACAATATCCAGTTCAACTCTAGTCATCGCAAGTGCTTTGGGAAGATGGATGAGGCACCTAGCATTGTTGATTATTTTGACTCATGAACATGCTGATGCGGTTCTTGGTCTAGATGATATACGTGTTGTACAGTCATTTAGTCCCACAAATGACATTGATCCTACTCCCATCTATCTAACTCAATTTGCAATGGAAAGGTACTACATTTCAGATGAACTTGAATATTGTTGGTTTCCTATGTTTAGTGCAGGCATAAATCTATTATTTTTAAGAAATTTTTTTAGAGACCTTTCCCATCAAAACAAATGGAGCATAAGAAAAACAGAATTTATTTCCAATAGGCTATTTAAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lactamase_B_2

Protein Analysis

128

Amino Acids

15.06

Weight (kDa)

6.9

Isoelectric Point (pI)

33.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 84
AciI CCGC 1 cut(s) 128
AclWI GGATC 1 cut(s) 182
AcsI RAATTY 2 cut(s) 304, 356
AfaI GTAC 2 cut(s) 159, 230
AflIII ACRYGT 1 cut(s) 151
AgsI TTSAA 2 cut(s) 45, 251
Alw26I GTCTC 1 cut(s) 309
AlwI GGATC 1 cut(s) 182
ApoI RAATTY 2 cut(s) 304, 356
BanI GGYRCC 1 cut(s) 84
BccI CCATC 3 cut(s) 69, 206, 333
BcoDI GTCTC 1 cut(s) 309
BfaI CTAG 3 cut(s) 50, 89, 140
BmiI GGNNCC 1 cut(s) 86
BmsI GCATC 2 cut(s) 33, 115
BsaAI YACGTR 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 309
Bse1I ACTGG 1 cut(s) 39
Bse3DI GCAATG 1 cut(s) 225
BseGI GGATG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 225
BseNI ACTGG 1 cut(s) 39
BsgI GTGCAG 1 cut(s) 297
BshNI GGYRCC 1 cut(s) 84
BslFI GGGAC 1 cut(s) 156
BsmAI GTCTC 1 cut(s) 309
BsmFI GGGAC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 309
Bsp1407I TGTACA 1 cut(s) 157
Bsp143I GATC 2 cut(s) 6, 187
BspACI CCGC 1 cut(s) 128
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 1 cut(s) 86
BspPI GGATC 1 cut(s) 182
BspT107I GGYRCC 1 cut(s) 84
BspTNI GGTCTC 1 cut(s) 309
BsrDI GCAATG 1 cut(s) 225
BsrGI TGTACA 1 cut(s) 157
BsrI ACTGG 1 cut(s) 39
BssMI GATC 2 cut(s) 6, 187
Bst4CI ACNGT 1 cut(s) 162
BstAUI TGTACA 1 cut(s) 157
BstBAI YACGTR 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 1 cut(s) 84
BstKTI GATC 2 cut(s) 9, 190
BstMAI GTCTC 1 cut(s) 309
BstMBI GATC 2 cut(s) 6, 187
BstNSI RCATGY 1 cut(s) 122
BtgZI GCGATG 1 cut(s) 40
BtsCI GGATG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 280
CciI TCATGA 1 cut(s) 112
Csp6I GTAC 2 cut(s) 158, 229
CviAII CATG 2 cut(s) 113, 119
CviJI RGCY 1 cut(s) 373
CviKI_1 RGCY 1 cut(s) 373
CviQI GTAC 2 cut(s) 158, 229
DdeI CTNAG 1 cut(s) 20
DpnI GATC 2 cut(s) 8, 189
DpnII GATC 2 cut(s) 6, 187
DraI TTTAAA 1 cut(s) 379
Eco31I GGTCTC 1 cut(s) 309
FaeI CATG 2 cut(s) 116, 122
FaiI YATR 6 cut(s) 114, 120, 149, 269, 284, 344
FaqI GGGAC 1 cut(s) 156
FatI CATG 2 cut(s) 112, 118
FokI GGATG 1 cut(s) 91
FspBI CTAG 3 cut(s) 50, 89, 140
Hin1II CATG 2 cut(s) 116, 122
HinfI GANTC 1 cut(s) 109
Hpy188I TCNGA 2 cut(s) 29, 241
Hpy188III TCNNGA 2 cut(s) 113, 140
HpyCH4III ACNGT 1 cut(s) 162
HpyCH4IV ACGT 1 cut(s) 151
HpyCH4V TGCA 2 cut(s) 218, 278
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 1 cut(s) 151
Hsp92II CATG 2 cut(s) 116, 122
Kzo9I GATC 2 cut(s) 6, 187
LmnI GCTCC 1 cut(s) 339
LpnPI CCDG 2 cut(s) 52, 264
LweI GCATC 2 cut(s) 33, 115
MaeI CTAG 3 cut(s) 50, 89, 140
MaeII ACGT 1 cut(s) 151
MalI GATC 2 cut(s) 8, 189
MboI GATC 2 cut(s) 6, 187
MboII GAAGA 1 cut(s) 84
MluCI AATT 4 cut(s) 212, 304, 356, 380
MlyI GAGTC 1 cut(s) 103
MnlI CCTC 1 cut(s) 75
MseI TTAA 2 cut(s) 299, 378
MslI CAYNNNNRTG 2 cut(s) 117, 123
NdeII GATC 2 cut(s) 6, 187
NlaIII CATG 2 cut(s) 116, 122
NlaIV GGNNCC 1 cut(s) 86
NspI RCATGY 1 cut(s) 122
PagI TCATGA 1 cut(s) 112
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Ppu21I YACGTR 1 cut(s) 152
PspN4I GGNNCC 1 cut(s) 86
RsaI GTAC 2 cut(s) 159, 230
RsaNI GTAC 2 cut(s) 158, 229
RseI CAYNNNNRTG 2 cut(s) 117, 123
SaqAI TTAA 2 cut(s) 299, 378
Sau3AI GATC 2 cut(s) 6, 187
SchI GAGTC 1 cut(s) 103
SetI ASST 4 cut(s) 90, 154, 230, 321
SfaNI GCATC 2 cut(s) 33, 115
SmiI ATTTAAAT 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 117, 123
Sse9I AATT 4 cut(s) 212, 304, 356, 380
SsiI CCGC 1 cut(s) 128
SspI AATATT 1 cut(s) 254
SspMI CTAG 3 cut(s) 50, 89, 140
SwaI ATTTAAAT 1 cut(s) 379
TaaI ACNGT 1 cut(s) 162
TaiI ACGT 1 cut(s) 154
TasI AATT 4 cut(s) 212, 304, 356, 380
TatI WGTACW 1 cut(s) 157
Tru1I TTAA 2 cut(s) 299, 378
Tru9I TTAA 2 cut(s) 299, 378
TspDTI ATGAA 2 cut(s) 129, 258
XapI RAATTY 2 cut(s) 304, 356
XbaI TCTAGA 1 cut(s) 139
XceI RCATGY 1 cut(s) 122
XspI CTAG 3 cut(s) 50, 89, 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.