MD04G1038400.v1.1

Survival motor neuron (SMN) interacting protein 1 (SIP1)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
4252712 .. 4255043
2332 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1038400.v1.1.491

Sequence Viewer

Length: 1239 bp
ATGGCAGATGATATGGATTCTGATACATGCGTCGGCTTCAAGCGAACAATCAAAGATTCCGAAGAAACCCAAACTCTCCCGCAACGCTCTGATTCTCCGTCTGCAATTCCAGAACAAGATAGCCACTCGTTTGAGATCGTTTCTCCTCTGAAACAAGACGCAGACTTCATCGAAAAGAGCTCTCCTTGTTTGGTCTCCGAGTCCTCCAAGAAGGACAAGAGTTCACCTCACGGCCAAGTCTCTGAGACCCATCTTGAAGAACTTCAAGAAATTCCCAATTCTGCGAATGAAAAGCTCGTATCTTTGGGTTTCGTTTCTGGGTTTCCTGCATCTGATGGAGTTGCCCAAGATTTCATGGGAAATTGCGAGGTGGGTCTTGTTTCTGATGGTGAATTCGTGACAACTGAGACTGCAAAGACTCTGGATGATGAGAAGAAGGGTGAAGGCGAAGTGGGTTTCTCTGGCATTCAAAAGTTGATGCAAGAAACGGAGTCTGCAACTGAGTCTTTCGAAAAAGCAGCGGAATCTCAGAGCTCCCTGGAAGCGAAGAAGAAGCAATTACTGGAGGAAGTGGAAGCAATGCTTGCGCCTGCAGAGAAGGCGCAGGTGAAAACTGCTGCTGATGGGTCTGTTGGTTCTTTCAAGATTGAAGTAATTGATGATACTGCATTGATGATACTCCCTGGCAATGGCCGTGGGAAGGAGTTGGGTTGTGCACAGAGGAATGGAAACAAGAATGCAAAGCAAGAAATGAATGGGAAAAAAGCAAGAGCTGCAGCGCGAAAGGAAAAGGTGGCGAATCGTCTGGTTGAAGCTCGTAGCCTGAGTTTAGAGAAAGAGAAAGGAACCAAGATCATTTACTCGAGGAAGGAGTTGGAGGCCATGCGGTTTGTCGATGTGGGGGAAAAGGAAAAAGTGGCGCATTGTCTGGTTGAAGCTAGTAGCCTGAGTTTTGAGAAAGGGAAAGGAACCAAGATCAGTTACTCGAGGAAGGAGTTGGAGGCCATGAGGTATGTCAATGTGGTGGAACAGAAGAAACTGTGGAAGGATATATACAGTGGCCTTGGGCCAGTCGTGGCAAAGGAGTATGATGATATGGCAAGTGCTAAGCAACAGAAGAACACCCACAATAACTTTGAGCATCGCAAACGCTTTGAGAAGATGGAAGCGGGACCTGGTATTCTTGGTGCCATTGCTTCAAGGGGAAGGTGGAATCAAATGAATATCTTTGTACGTTGA

Protein Analysis

413

Amino Acids

45.32

Weight (kDa)

5.59

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 595
Acc36I ACCTGC 1 cut(s) 595
AccB1I GGYRCC 1 cut(s) 1187
AccII CGCG 1 cut(s) 781
AciI CCGC 4 cut(s) 80, 521, 886, 1169
AcoI YGGCCR 2 cut(s) 232, 691
AcsI RAATTY 2 cut(s) 270, 392
AfaI GTAC 1 cut(s) 1233
AfiI CCNNNNNNNGG 2 cut(s) 689, 700
AgsI TTSAA 9 cut(s) 40, 257, 266, 470, 643, 650, 812, 935, 1200
AjnI CCWGG 3 cut(s) 537, 682, 1174
AluBI AGCT 6 cut(s) 180, 295, 534, 773, 815, 938
AluI AGCT 6 cut(s) 180, 295, 534, 773, 815, 938
Alw21I GWGCWC 3 cut(s) 182, 536, 718
Alw26I GTCTC 4 cut(s) 199, 239, 244, 401
Alw44I GTGCAC 1 cut(s) 714
Ama87I CYCGRG 2 cut(s) 862, 985
AoxI GGCC 6 cut(s) 232, 691, 879, 1002, 1060, 1067
ApaLI GTGCAC 1 cut(s) 714
ApeKI GCWGC 4 cut(s) 518, 617, 773, 776
ApoI RAATTY 2 cut(s) 270, 392
Asp700I GAANNNNTTC 1 cut(s) 261
AspLEI GCGC 4 cut(s) 589, 604, 781, 922
AspS9I GGNCC 2 cut(s) 1067, 1172
AsuHPI GGTGA 4 cut(s) 216, 401, 452, 619
AsuII TTCGAA 1 cut(s) 510
AvaI CYCGRG 2 cut(s) 862, 985
AvaII GGWCC 1 cut(s) 1172
BaeGI GKGCMC 1 cut(s) 718
BaeI ACNNNNGTAYC 2 cut(s) 15, 48
BanI GGYRCC 1 cut(s) 1187
BanII GRGCYC 2 cut(s) 182, 536
BarI GAAGNNNNNNTAC 2 cut(s) 1037, 1069
Bbv12I GWGCWC 3 cut(s) 182, 536, 718
BbvI GCAGC 4 cut(s) 530, 604, 760, 788
BccI CCATC 5 cut(s) 258, 329, 380, 617, 1156
BceAI ACGGC 2 cut(s) 247, 678
BciT130I CCWGG 3 cut(s) 539, 684, 1176
BcoDI GTCTC 4 cut(s) 199, 239, 244, 401
BfaI CTAG 1 cut(s) 939
BfmI CTRYAG 2 cut(s) 591, 774
BfuAI ACCTGC 1 cut(s) 595
BisI GCNGC 4 cut(s) 519, 618, 774, 777
BlpI GCTNAGC 1 cut(s) 1107
BlsI GCNGC 4 cut(s) 520, 619, 775, 778
Bme1390I CCNGG 3 cut(s) 539, 684, 1176
Bme18I GGWCC 1 cut(s) 1172
BmeT110I CYCGRG 2 cut(s) 862, 985
BmgT120I GGNCC 2 cut(s) 1067, 1172
BmiI GGNNCC 4 cut(s) 847, 970, 1173, 1189
BmrFI CCNGG 3 cut(s) 539, 684, 1176
BmsI GCATC 3 cut(s) 338, 468, 1150
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 584
Bpu1102I GCTNAGC 1 cut(s) 1107
Bpu14I TTCGAA 1 cut(s) 510
BsaI GGTCTC 2 cut(s) 199, 239
BsaJI CCNNGG 4 cut(s) 537, 682, 694, 1063
Bsc4I CCNNNNNNNGG 2 cut(s) 689, 700
Bse1I ACTGG 2 cut(s) 567, 1070
Bse3DI GCAATG 3 cut(s) 585, 694, 1191
BseBI CCWGG 3 cut(s) 539, 684, 1176
BseDI CCNNGG 4 cut(s) 537, 682, 694, 1063
BseGI GGATG 1 cut(s) 430
BseLI CCNNNNNNNGG 2 cut(s) 689, 700
BseMI GCAATG 3 cut(s) 585, 694, 1191
BseMII CTCAG 6 cut(s) 234, 396, 492, 542, 815, 938
BseNI ACTGG 2 cut(s) 567, 1070
BseRI GAGGAG 1 cut(s) 135
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 4 cut(s) 530, 604, 760, 788
Bsh1236I CGCG 1 cut(s) 781
BshFI GGCC 6 cut(s) 234, 693, 881, 1004, 1062, 1069
BshNI GGYRCC 1 cut(s) 1187
BsiHKAI GWGCWC 3 cut(s) 182, 536, 718
BsiHKCI CYCGRG 2 cut(s) 862, 985
BslFI GGGAC 1 cut(s) 1185
BslI CCNNNNNNNGG 2 cut(s) 689, 700
BsmAI GTCTC 4 cut(s) 199, 239, 244, 401
BsmFI GGGAC 1 cut(s) 1185
BsmI GAATGC 2 cut(s) 465, 742
BsnI GGCC 6 cut(s) 234, 693, 881, 1004, 1062, 1069
Bso31I GGTCTC 2 cut(s) 199, 239
BsoBI CYCGRG 2 cut(s) 862, 985
Bsp119I TTCGAA 1 cut(s) 510
Bsp1286I GDGCHC 3 cut(s) 182, 536, 718
Bsp143I GATC 3 cut(s) 135, 852, 975
Bsp1720I GCTNAGC 1 cut(s) 1107
BspACI CCGC 4 cut(s) 80, 521, 886, 1169
BspANI GGCC 6 cut(s) 234, 693, 881, 1004, 1062, 1069
BspCNI CTCAG 6 cut(s) 235, 397, 493, 541, 816, 939
BspFNI CGCG 1 cut(s) 781
BspLI GGNNCC 4 cut(s) 847, 970, 1173, 1189
BspMAI CTGCAG 2 cut(s) 595, 778
BspMI ACCTGC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 510
BspT107I GGYRCC 1 cut(s) 1187
BspTNI GGTCTC 2 cut(s) 199, 239
BsrDI GCAATG 3 cut(s) 585, 694, 1191
BsrI ACTGG 2 cut(s) 567, 1070
BssECI CCNNGG 4 cut(s) 537, 682, 694, 1063
BssMI GATC 3 cut(s) 135, 852, 975
BssT1I CCWWGG 1 cut(s) 1063
Bst2UI CCWGG 3 cut(s) 539, 684, 1176
Bst4CI ACNGT 2 cut(s) 1041, 1058
BstAPI GCANNNNNTGC 2 cut(s) 584, 773
BstBI TTCGAA 1 cut(s) 510
BstC8I GCNNGC 2 cut(s) 585, 591
BstDEI CTNAG 7 cut(s) 243, 405, 501, 528, 824, 947, 1107
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 1 cut(s) 430
BstFNI CGCG 1 cut(s) 781
BstHHI GCGC 4 cut(s) 589, 604, 781, 922
BstKTI GATC 3 cut(s) 138, 855, 978
BstMAI GTCTC 4 cut(s) 199, 239, 244, 401
BstMBI GATC 3 cut(s) 135, 852, 975
BstMWI GCNNNNNNNGC 3 cut(s) 584, 599, 773
BstNI CCWGG 3 cut(s) 539, 684, 1176
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 3 cut(s) 537, 682, 1174
BstSFI CTRYAG 2 cut(s) 591, 774
BstSLI GKGCMC 1 cut(s) 718
BstUI CGCG 1 cut(s) 781
BstV1I GCAGC 4 cut(s) 530, 604, 760, 788
BsuRI GGCC 6 cut(s) 234, 693, 881, 1004, 1062, 1069
BtgI CCRYGG 1 cut(s) 694
BtgZI GCGATG 1 cut(s) 1127
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 1063
BveI ACCTGC 1 cut(s) 595
Cac8I GCNNGC 2 cut(s) 585, 591
CfoI GCGC 4 cut(s) 589, 604, 781, 922
Cfr13I GGNCC 2 cut(s) 1067, 1172
CseI GACGC 2 cut(s) 19, 167
CsiI ACCWGGT 1 cut(s) 1174
Csp6I GTAC 1 cut(s) 1232
CspCI CAANNNNNGTGG 2 cut(s) 676, 711
CviAII CATG 4 cut(s) 27, 355, 883, 1006
CviQI GTAC 1 cut(s) 1232
DdeI CTNAG 7 cut(s) 243, 405, 501, 528, 824, 947, 1107
DpnI GATC 3 cut(s) 137, 854, 977
DpnII GATC 3 cut(s) 135, 852, 975
EaeI YGGCCR 2 cut(s) 232, 691
Ecl136II GAGCTC 2 cut(s) 180, 534
Eco130I CCWWGG 1 cut(s) 1063
Eco24I GRGCYC 2 cut(s) 182, 536
Eco31I GGTCTC 2 cut(s) 199, 239
Eco47I GGWCC 1 cut(s) 1172
Eco53kI GAGCTC 2 cut(s) 180, 534
Eco88I CYCGRG 2 cut(s) 862, 985
EcoICRI GAGCTC 2 cut(s) 180, 534
EcoO109I RGGNCCY 1 cut(s) 1172
EcoRI GAATTC 1 cut(s) 392
EcoRII CCWGG 3 cut(s) 537, 682, 1174
EcoT14I CCWWGG 1 cut(s) 1063
EcoT38I GRGCYC 2 cut(s) 182, 536
ErhI CCWWGG 1 cut(s) 1063
FaeI CATG 4 cut(s) 30, 358, 886, 1009
FalI AAGNNNNNCTT 2 cut(s) 567, 599
FaqI GGGAC 1 cut(s) 1185
FatI CATG 4 cut(s) 26, 354, 882, 1005
FauI CCCGC 2 cut(s) 87, 1162
Fnu4HI GCNGC 4 cut(s) 519, 618, 774, 777
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 2 cut(s) 182, 536
Fsp4HI GCNGC 4 cut(s) 519, 618, 774, 777
FspBI CTAG 1 cut(s) 939
GlaI GCGC 4 cut(s) 588, 603, 780, 921
GluI GCNGC 4 cut(s) 519, 618, 774, 777
GsuI CTGGAG 1 cut(s) 584
HaeIII GGCC 6 cut(s) 234, 693, 881, 1004, 1062, 1069
HgaI GACGC 2 cut(s) 19, 167
HhaI GCGC 4 cut(s) 589, 604, 781, 922
Hin1II CATG 4 cut(s) 30, 358, 886, 1009
Hin6I GCGC 4 cut(s) 587, 602, 779, 920
HinP1I GCGC 4 cut(s) 587, 602, 779, 920
HphI GGTGA 4 cut(s) 216, 401, 452, 619
Hpy166II GTNNAC 2 cut(s) 224, 716
Hpy188I TCNGA 9 cut(s) 22, 61, 91, 150, 199, 244, 334, 385, 531
Hpy188III TCNNGA 6 cut(s) 110, 254, 266, 397, 422, 643
Hpy8I GTNNAC 2 cut(s) 224, 716
Hpy99I CGWCG 1 cut(s) 35
HpyAV CCTTC 9 cut(s) 205, 430, 437, 592, 694, 862, 985, 1039, 1200
HpyCH4III ACNGT 2 cut(s) 1041, 1058
HpyCH4IV ACGT 1 cut(s) 1234
HpyF10VI GCNNNNNNNGC 3 cut(s) 584, 599, 773
HpyF3I CTNAG 7 cut(s) 243, 405, 501, 528, 824, 947, 1107
HpySE526I ACGT 1 cut(s) 1234
Hsp92II CATG 4 cut(s) 30, 358, 886, 1009
HspAI GCGC 4 cut(s) 587, 602, 779, 920
Kzo9I GATC 3 cut(s) 135, 852, 975
LmnI GCTCC 1 cut(s) 539
Lsp1109I GCAGC 4 cut(s) 530, 604, 760, 788
LweI GCATC 3 cut(s) 338, 468, 1150
MabI ACCWGGT 1 cut(s) 1174
MaeI CTAG 1 cut(s) 939
MaeII ACGT 1 cut(s) 1234
MaeIII GTNAC 2 cut(s) 397, 980
MalI GATC 3 cut(s) 137, 854, 977
MboI GATC 3 cut(s) 135, 852, 975
MboII GAAGA 8 cut(s) 74, 269, 445, 559, 562, 1045, 1129, 1171
MhlI GDGCHC 3 cut(s) 182, 536, 718
MluCI AATT 7 cut(s) 105, 270, 277, 361, 392, 557, 654
MlyI GAGTC 4 cut(s) 209, 412, 500, 512
MmeI TCCRAC 2 cut(s) 855, 978
MroXI GAANNNNTTC 1 cut(s) 261
MspA1I CMGCKG 1 cut(s) 521
MspR9I CCNGG 3 cut(s) 539, 684, 1176
Mva1269I GAATGC 2 cut(s) 465, 742
MvaI CCWGG 3 cut(s) 539, 684, 1176
MvnI CGCG 1 cut(s) 781
MwoI GCNNNNNNNGC 3 cut(s) 584, 599, 773
NdeII GATC 3 cut(s) 135, 852, 975
NlaIII CATG 4 cut(s) 30, 358, 886, 1009
NlaIV GGNNCC 4 cut(s) 847, 970, 1173, 1189
NmuCI GTSAC 1 cut(s) 397
NspI RCATGY 1 cut(s) 30
NspV TTCGAA 1 cut(s) 510
PaeR7I CTCGAG 2 cut(s) 862, 985
PaqCI CACCTGC 1 cut(s) 595
PctI GAATGC 2 cut(s) 465, 742
PdmI GAANNNNTTC 1 cut(s) 261
PfeI GAWTC 6 cut(s) 17, 56, 92, 524, 799, 1213
PkrI GCNGC 4 cut(s) 520, 619, 775, 778
PleI GAGTC 4 cut(s) 208, 412, 499, 511
PpsI GAGTC 4 cut(s) 208, 412, 499, 511
PpuMI RGGWCCY 1 cut(s) 1172
Psp124BI GAGCTC 2 cut(s) 182, 536
Psp5II RGGWCCY 1 cut(s) 1172
Psp6I CCWGG 3 cut(s) 537, 682, 1174
PspGI CCWGG 3 cut(s) 537, 682, 1174
PspN4I GGNNCC 4 cut(s) 847, 970, 1173, 1189
PspPI GGNCC 2 cut(s) 1067, 1172
PspPPI RGGWCCY 1 cut(s) 1172
PspXI VCTCGAGB 2 cut(s) 862, 985
PstI CTGCAG 2 cut(s) 595, 778
RsaI GTAC 1 cut(s) 1233
RsaNI GTAC 1 cut(s) 1232
SacI GAGCTC 2 cut(s) 182, 536
SatI GCNGC 4 cut(s) 519, 618, 774, 777
Sau3AI GATC 3 cut(s) 135, 852, 975
Sau96I GGNCC 2 cut(s) 1067, 1172
SchI GAGTC 4 cut(s) 209, 412, 500, 512
ScrFI CCNGG 3 cut(s) 539, 684, 1176
SduI GDGCHC 3 cut(s) 182, 536, 718
SexAI ACCWGGT 1 cut(s) 1174
SfaNI GCATC 3 cut(s) 338, 468, 1150
SfcI CTRYAG 2 cut(s) 591, 774
Sfr274I CTCGAG 2 cut(s) 862, 985
SfuI TTCGAA 1 cut(s) 510
SinI GGWCC 1 cut(s) 1172
SlaI CTCGAG 2 cut(s) 862, 985
SmlI CTYRAG 2 cut(s) 862, 985
SmoI CTYRAG 2 cut(s) 862, 985
Sse9I AATT 7 cut(s) 105, 270, 277, 361, 392, 557, 654
SsiI CCGC 4 cut(s) 80, 521, 886, 1169
SspMI CTAG 1 cut(s) 939
SstI GAGCTC 2 cut(s) 182, 536
StyD4I CCNGG 3 cut(s) 537, 682, 1174
StyI CCWWGG 1 cut(s) 1063
TaaI ACNGT 2 cut(s) 1041, 1058
TaiI ACGT 1 cut(s) 1237
TaqI TCGA 5 cut(s) 171, 510, 863, 894, 986
TasI AATT 7 cut(s) 105, 270, 277, 361, 392, 557, 654
TfiI GAWTC 6 cut(s) 17, 56, 92, 524, 799, 1213
TscAI CASTG 1 cut(s) 1063
TseFI GTSAC 1 cut(s) 397
TseI GCWGC 4 cut(s) 518, 617, 773, 776
Tsp45I GTSAC 1 cut(s) 397
TspDTI ATGAA 5 cut(s) 157, 303, 343, 767, 1235
TspGWI ACGGA 2 cut(s) 87, 503
TspRI CASTG 1 cut(s) 1063
VneI GTGCAC 1 cut(s) 714
VpaK11BI GGWCC 1 cut(s) 1172
XapI RAATTY 2 cut(s) 270, 392
XceI RCATGY 1 cut(s) 30
XhoI CTCGAG 2 cut(s) 862, 985
XmnI GAANNNNTTC 1 cut(s) 261
XspI CTAG 1 cut(s) 939
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.