Rw5G009490

Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0003622
Physical Location & Seq
Reverse (-)
10188107 .. 10193132
5026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G009490.1

Sequence Viewer

Length: 339 bp
ATGTGGAAAGATGTATACAATGGGCTTGGACTAGTGGTGGCTAGAGAGTATGATGATCTGGCAATCTCTAAGCATCAGAACAATATCCAGTTCAACTCTAGTCATCGCAAGTGCTTTGGGAAGATGGATGAGGCACCTAGCATTGTTGACACAGATTTGCTGCAAAGAACATGGCCTATTGTGGAATCCGCCTTAGAAGAGTATGGCCTTTCGTGCACTCTGGATCTGGTGAAGGGTTATATGAGAGTGTCCACAACCAAAATGGCTTCAGATCCAGATTTTATATTCACAGCTATTGATATTCTTGAACTTTTGTCAAGAAGTGTTCCGGCAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.66

Weight (kDa)

4.76

Isoelectric Point (pI)

41.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_KRR1_1st PF17903 53 - 111 7.3e-12 Krr1 KH1 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 133
AccI GTMKAC 1 cut(s) 15
AciI CCGC 1 cut(s) 189
AclWI GGATC 2 cut(s) 231, 266
AcuI CTGAAG 1 cut(s) 252
AgsI TTSAA 2 cut(s) 94, 308
AhlI ACTAGT 1 cut(s) 31
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw21I GWGCWC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 214
AlwI GGATC 2 cut(s) 231, 266
AoxI GGCC 2 cut(s) 173, 205
ApaLI GTGCAC 1 cut(s) 214
ApeKI GCWGC 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 241
BaeGI GKGCMC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 133
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 147
BccI CCATC 1 cut(s) 118
BcuI ACTAGT 1 cut(s) 31
BfaI CTAG 4 cut(s) 32, 42, 99, 138
BisI GCNGC 1 cut(s) 161
BlsI GCNGC 1 cut(s) 162
BmiI GGNNCC 1 cut(s) 135
BmsI GCATC 1 cut(s) 82
Bse1I ACTGG 1 cut(s) 88
BseGI GGATG 1 cut(s) 133
BseNI ACTGG 1 cut(s) 88
BseSI GKGCMC 1 cut(s) 218
BseXI GCAGC 1 cut(s) 147
BshFI GGCC 2 cut(s) 175, 207
BshNI GGYRCC 1 cut(s) 133
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 329
BsnI GGCC 2 cut(s) 175, 207
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 3 cut(s) 55, 223, 271
BspACI CCGC 1 cut(s) 189
BspANI GGCC 2 cut(s) 175, 207
BspLI GGNNCC 1 cut(s) 135
BspPI GGATC 2 cut(s) 231, 266
BspT107I GGYRCC 1 cut(s) 133
BsrI ACTGG 1 cut(s) 88
BssMI GATC 3 cut(s) 55, 223, 271
BssNAI GTATAC 1 cut(s) 16
Bst1107I GTATAC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 192
BstDEI CTNAG 2 cut(s) 69, 193
BstF5I GGATG 1 cut(s) 133
BstKTI GATC 3 cut(s) 58, 226, 274
BstMBI GATC 3 cut(s) 55, 223, 271
BstMWI GCNNNNNNNGC 1 cut(s) 213
BstSLI GKGCMC 1 cut(s) 218
BstV1I GCAGC 1 cut(s) 147
BstX2I RGATCY 2 cut(s) 223, 271
BstYI RGATCY 2 cut(s) 223, 271
BstZ17I GTATAC 1 cut(s) 16
BsuRI GGCC 2 cut(s) 175, 207
BtgZI GCGATG 1 cut(s) 89
BtsCI GGATG 1 cut(s) 133
CviAII CATG 1 cut(s) 171
CviJI RGCY 6 cut(s) 25, 41, 175, 207, 266, 293
CviKI_1 RGCY 6 cut(s) 25, 41, 175, 207, 266, 293
DdeI CTNAG 2 cut(s) 69, 193
DpnI GATC 3 cut(s) 57, 225, 273
DpnII GATC 3 cut(s) 55, 223, 271
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
EciI GGCGGA 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 252
FaeI CATG 1 cut(s) 174
FaiI YATR 7 cut(s) 16, 51, 172, 204, 240, 242, 284
FatI CATG 1 cut(s) 170
FblI GTMKAC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 161
FokI GGATG 1 cut(s) 140
Fsp4HI GCNGC 1 cut(s) 161
FspBI CTAG 4 cut(s) 32, 42, 99, 138
GluI GCNGC 1 cut(s) 161
HaeIII GGCC 2 cut(s) 175, 207
HapII CCGG 1 cut(s) 329
Hin1II CATG 1 cut(s) 174
HincII GTYRAC 1 cut(s) 148
HindII GTYRAC 1 cut(s) 148
HinfI GANTC 1 cut(s) 185
HpaII CCGG 1 cut(s) 329
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 4 cut(s) 16, 148, 216, 252
Hpy188I TCNGA 2 cut(s) 78, 271
Hpy188III TCNNGA 4 cut(s) 221, 275, 305, 318
Hpy8I GTNNAC 4 cut(s) 16, 148, 216, 252
HpyAV CCTTC 1 cut(s) 226
HpyCH4V TGCA 2 cut(s) 163, 216
HpyF10VI GCNNNNNNNGC 1 cut(s) 213
HpyF3I CTNAG 2 cut(s) 69, 193
Hsp92II CATG 1 cut(s) 174
Kzo9I GATC 3 cut(s) 55, 223, 271
LpnPI CCDG 5 cut(s) 44, 101, 206, 212, 288
Lsp1109I GCAGC 1 cut(s) 147
LweI GCATC 1 cut(s) 82
MaeI CTAG 4 cut(s) 32, 42, 99, 138
MalI GATC 3 cut(s) 57, 225, 273
MboI GATC 3 cut(s) 55, 223, 271
MboII GAAGA 2 cut(s) 133, 209
MflI RGATCY 2 cut(s) 223, 271
MhlI GDGCHC 1 cut(s) 218
MnlI CCTC 1 cut(s) 124
MspI CCGG 1 cut(s) 329
MwoI GCNNNNNNNGC 1 cut(s) 213
NdeII GATC 3 cut(s) 55, 223, 271
NlaIII CATG 1 cut(s) 174
NlaIV GGNNCC 1 cut(s) 135
PfeI GAWTC 1 cut(s) 185
PkrI GCNGC 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 135
PsuI RGATCY 2 cut(s) 223, 271
SatI GCNGC 1 cut(s) 161
Sau3AI GATC 3 cut(s) 55, 223, 271
SduI GDGCHC 1 cut(s) 218
SetI ASST 2 cut(s) 139, 295
SfaNI GCATC 1 cut(s) 82
SpeI ACTAGT 1 cut(s) 31
SsiI CCGC 1 cut(s) 189
SspMI CTAG 4 cut(s) 32, 42, 99, 138
TfiI GAWTC 1 cut(s) 185
TseI GCWGC 1 cut(s) 160
VneI GTGCAC 1 cut(s) 214
XcmI CCANNNNNNNNNTGG 1 cut(s) 259
XmiI GTMKAC 1 cut(s) 15
XspI CTAG 4 cut(s) 32, 42, 99, 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.