Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0003622

Physical Location & Seq

Genomic Coordinates Reverse (-)

76623174 .. 76625784

Gene Structure 2611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG536300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTGGAAAGATGTATACAATGGGCTTGGACTGGTGGTGGCAAGAGAGTATGATGATCTGGCAATCTCTAAACATCAAAACAATATCCAGTTCAACTCTAGTCATCGCAAGTGCTTTGGGAAGATGGATGAGGCACCTAGCATTGTTGAATCAAAGGGAATAGACTCAATAGAGGGGGGAAAGAAGCAAAAACAGAATGGCGCACCGCTGGAAGCACCAAACACAGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000387 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016071 GO:0016604 GO:0022607 GO:0022613 GO:0022618 GO:0031974 GO:0031981 GO:0032797 GO:0032991 GO:0034622 GO:0034641 GO:0034719 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0065003 GO:0070013 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097504 GO:0120114 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

SIP1

Protein Analysis

76

Amino Acids

8.4

Weight (kDa)

6.71

Isoelectric Point (pI)

40.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003622)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54380
fragaria_vesca	FvH4_4g11290 FvH4_4g11290
malus_domestica	MD04G1038300.v1.1 MD04G1038400.v1.1 MD13G1258700.v1.1 MD16G1211800.v1.1
prunus_persica	Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G188800_v2.0.a1 Prupe.1G189100_v2.0.a1 Prupe.1G189100_v2.0.a1
pyrus_communis	pycom04g02980 pycom04g03120
rosa_chinensis	RchiOBHm_Chr4g0407521 RchiOBHm_Chr4g0407531
rosa_laevigata	RLG00000008713
rosa_multiflora	Rmu_co8210254.1_g000001 Rmu_sc0004841.1_g000011 Rmu_sc0009637.1_g000003
rosa_roxburghii	Rroxscaffold_3G00255900 Rroxscaffold_3G00257360 Rroxscaffold_5G00352150 Rroxscaffold_5G00366810
rosa_rugosa	Rorug04G0080200 Rorug04G0080200
rosa_samantha	Rh1AG095200 Rh2DG536300 Rh4AG144800 Rh4BG142700 Rh4CG151500 Rh4DG138700 Rh5AG108700
rosa_wichuraiana	Rw4G011770 Rw5G009490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	133
AccI	GTMKAC	1 cut(s)	15
AciI	CCGC	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	94, 149
AspLEI	GCGC	1 cut(s)	203
BanI	GGYRCC	1 cut(s)	133
BccI	CCATC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	99, 138
BmiI	GGNNCC	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	36, 88
BseGI	GGATG	1 cut(s)	133
BseNI	ACTGG	2 cut(s)	36, 88
BshNI	GGYRCC	1 cut(s)	133
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	206
BspLI	GGNNCC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	133
BsrI	ACTGG	2 cut(s)	36, 88
BssMI	GATC	1 cut(s)	55
BssNAI	GTATAC	1 cut(s)	16
Bst1107I	GTATAC	1 cut(s)	16
Bst4CI	ACNGT	1 cut(s)	226
BstF5I	GGATG	1 cut(s)	133
BstHHI	GCGC	1 cut(s)	203
BstKTI	GATC	1 cut(s)	58
BstMBI	GATC	1 cut(s)	55
BstZ17I	GTATAC	1 cut(s)	16
BtgZI	GCGATG	1 cut(s)	89
BtsCI	GGATG	1 cut(s)	133
CfoI	GCGC	1 cut(s)	203
CviJI	RGCY	1 cut(s)	25
CviKI_1	RGCY	1 cut(s)	25
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
FaiI	YATR	2 cut(s)	16, 51
FblI	GTMKAC	1 cut(s)	15
FokI	GGATG	1 cut(s)	140
FspBI	CTAG	2 cut(s)	99, 138
GlaI	GCGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	203
Hin6I	GCGC	1 cut(s)	201
HinP1I	GCGC	1 cut(s)	201
HinfI	GANTC	2 cut(s)	149, 164
Hpy166II	GTNNAC	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	16
HpyCH4III	ACNGT	1 cut(s)	226
HspAI	GCGC	1 cut(s)	201
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	4 cut(s)	17, 44, 101, 194
MaeI	CTAG	2 cut(s)	99, 138
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	158
MnlI	CCTC	2 cut(s)	124, 166
MseI	TTAA	1 cut(s)	229
MspA1I	CMGCKG	1 cut(s)	208
NdeII	GATC	1 cut(s)	55
NlaIV	GGNNCC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	149
PleI	GAGTC	1 cut(s)	158
PpsI	GAGTC	1 cut(s)	158
PspN4I	GGNNCC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	158
SetI	ASST	1 cut(s)	139
SgeI	CNNG	9 cut(s)	38, 44, 54, 71, 100, 111, 121, 150, 221
SsiI	CCGC	1 cut(s)	206
SspMI	CTAG	2 cut(s)	99, 138
TaaI	ACNGT	1 cut(s)	226
TfiI	GAWTC	1 cut(s)	149
Tru1I	TTAA	1 cut(s)	229
Tru9I	TTAA	1 cut(s)	229
XmiI	GTMKAC	1 cut(s)	15
XspI	CTAG	2 cut(s)	99, 138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.