Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Reverse (-)

20401357 .. 20403166

Gene Structure 1810 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G54630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGCTTCCATTGCTACTTCTGCTTCTACTTCTCTCCAAGCTCGTCCTCGTCAACTGGTGATTGGGGCTAAACAAGTTAAAAGCTTTAGCTATGGAAGCAGAAGCAATCTTTCTTTTAATCTTCGCCAGCTTCCTACCCGCTTGACTGTTTACTGCGCTGCAAAACCTGAGACAGTGGACAAGGTGTGTGCAGTTGTCAGAAAGCAACTCTCACTCAAAGAGGCTGACGAAATTACCGCTGCCACCAAATTTGCTGCACTTGGTGCTGATTCCCTTGATACGGTGGAGATAGTTATGGGATTAGAGGAAGAGTTTGGGATTGAAATGGCGGAGGAGAAAGCACAGTCTATCGCCACAGTTGAGCAAGCAGCTGCACTCATTGAGGAGCTCTTGTTGGAAAAGGCCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0019904 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

136

Amino Acids

14.65

Weight (kDa)

5.29

Isoelectric Point (pI)

44.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	139, 237, 329
AcsI	RAATTY	1 cut(s)	248
AdeI	CACNNNGTG	1 cut(s)	263
AfiI	CCNNNNNNNGG	1 cut(s)	280
AgsI	TTSAA	1 cut(s)	323
AluBI	AGCT	6 cut(s)	41, 84, 90, 130, 371, 388
AluI	AGCT	6 cut(s)	41, 84, 90, 130, 371, 388
Alw21I	GWGCWC	1 cut(s)	390
Alw26I	GTCTC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	158, 239, 254, 368, 371
ApoI	RAATTY	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	158
AsuHPI	GGTGA	1 cut(s)	70
BanII	GRGCYC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	390
BbvI	GCAGC	5 cut(s)	145, 226, 241, 358, 380
BcoDI	GTCTC	1 cut(s)	164
BisI	GCNGC	5 cut(s)	159, 240, 255, 369, 372
BlsI	GCNGC	5 cut(s)	160, 241, 256, 370, 373
BsaXI	ACNNNNNCTCC	2 cut(s)	377, 407
Bsc4I	CCNNNNNNNGG	1 cut(s)	280
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	1 cut(s)	9
BseLI	CCNNNNNNNGG	1 cut(s)	280
BseMI	GCAATG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	2 cut(s)	347, 398
BseXI	GCAGC	5 cut(s)	145, 226, 241, 358, 380
BsgI	GTGCAG	3 cut(s)	210, 240, 357
BshFI	GGCC	1 cut(s)	404
BsiHKAI	GWGCWC	1 cut(s)	390
BslI	CCNNNNNNNGG	1 cut(s)	280
BsmAI	GTCTC	1 cut(s)	164
BsnI	GGCC	1 cut(s)	404
Bsp1286I	GDGCHC	1 cut(s)	390
BspACI	CCGC	3 cut(s)	139, 237, 329
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	9
BsrI	ACTGG	1 cut(s)	60
Bst4CI	ACNGT	5 cut(s)	148, 175, 283, 345, 358
Bst6I	CTCTTC	1 cut(s)	303
BstAPI	GCANNNNNTGC	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	128, 366
BstDEI	CTNAG	1 cut(s)	168
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	164
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 20, 96, 263
BstV1I	GCAGC	5 cut(s)	145, 226, 241, 358, 380
BsuRI	GGCC	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	2 cut(s)	128, 366
CfoI	GCGC	1 cut(s)	158
CspCI	CAANNNNNGTGG	2 cut(s)	232, 267
DdeI	CTNAG	1 cut(s)	168
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	303
EarI	CTCTTC	1 cut(s)	303
EciI	GGCGGA	1 cut(s)	344
Ecl136II	GAGCTC	1 cut(s)	388
Eco24I	GRGCYC	1 cut(s)	390
Eco53kI	GAGCTC	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	388
EcoT38I	GRGCYC	1 cut(s)	390
FaiI	YATR	2 cut(s)	93, 296
FauI	CCCGC	1 cut(s)	146
Fnu4HI	GCNGC	5 cut(s)	159, 240, 255, 369, 372
FriOI	GRGCYC	1 cut(s)	390
Fsp4HI	GCNGC	5 cut(s)	159, 240, 255, 369, 372
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	159, 240, 255, 369, 372
HaeIII	GGCC	1 cut(s)	404
HhaI	GCGC	1 cut(s)	158
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HincII	GTYRAC	1 cut(s)	53
HindII	GTYRAC	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	82
HinfI	GANTC	1 cut(s)	269
HphI	GGTGA	1 cut(s)	70
Hpy166II	GTNNAC	3 cut(s)	53, 151, 178
Hpy188I	TCNGA	1 cut(s)	200
Hpy8I	GTNNAC	3 cut(s)	53, 151, 178
HpyCH4III	ACNGT	5 cut(s)	148, 175, 283, 345, 358
HpyCH4V	TGCA	4 cut(s)	161, 191, 257, 374
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 20, 96, 263
HpyF3I	CTNAG	1 cut(s)	168
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	385
LpnPI	CCDG	3 cut(s)	41, 140, 180
Lsp1109I	GCAGC	5 cut(s)	145, 226, 241, 358, 380
MboII	GAAGA	2 cut(s)	113, 320
MhlI	GDGCHC	1 cut(s)	390
MluCI	AATT	2 cut(s)	231, 248
MmeI	TCCRAC	1 cut(s)	375
MnlI	CCTC	5 cut(s)	57, 214, 298, 325, 376
MseI	TTAA	2 cut(s)	78, 117
MspA1I	CMGCKG	2 cut(s)	239, 371
MwoI	GCNNNNNNNGC	4 cut(s)	11, 20, 96, 263
PfeI	GAWTC	1 cut(s)	269
PkrI	GCNGC	5 cut(s)	160, 241, 256, 370, 373
Psp124BI	GAGCTC	1 cut(s)	390
PvuII	CAGCTG	1 cut(s)	371
SacI	GAGCTC	1 cut(s)	390
SaqAI	TTAA	2 cut(s)	78, 117
SatI	GCNGC	5 cut(s)	159, 240, 255, 369, 372
SduI	GDGCHC	1 cut(s)	390
SetI	ASST	8 cut(s)	43, 86, 92, 132, 169, 186, 373, 390
Sse9I	AATT	2 cut(s)	231, 248
SsiI	CCGC	3 cut(s)	139, 237, 329
SstI	GAGCTC	1 cut(s)	390
TaaI	ACNGT	5 cut(s)	148, 175, 283, 345, 358
TasI	AATT	2 cut(s)	231, 248
TfiI	GAWTC	1 cut(s)	269
Tru1I	TTAA	2 cut(s)	78, 117
Tru9I	TTAA	2 cut(s)	78, 117
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	5 cut(s)	158, 239, 254, 368, 371
TspRI	CASTG	1 cut(s)	180
XapI	RAATTY	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.