Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002006.1

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

83673 .. 85886

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002006.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

atggcttctctttctcaatcttctactgccttctcagcttccttcaaacccaccctggcatgcagcagcagggtctctagtttgaaatcagtttctttttccattactgggaagcgcttcccatctctgacttcaagacctggacgctttcaagtttcctgttcggccaaaccagagactcttaacaaggtctgtgatatagtgaagaagcagctggctttgcctgatgacacagctgtgaccgcaggctccaagttcactgaacttggagctgattctcttgacacagttgagattgtgatgggacttgaggaggagtttggtatcagcgtggaagaagaaagtgctcagaccatcgccactgttcaagatgcagcagatctgattgagaagctcgtcgagaagaaagcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

137

Amino Acids

14.53

Weight (kDa)

5.03

Isoelectric Point (pI)

48.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	243
AcoI	YGGCCR	1 cut(s)	165
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	5 cut(s)	46, 85, 135, 152, 368
AjnI	CCWGG	2 cut(s)	54, 139
AleI	CACNNNNGTG	1 cut(s)	236
AluBI	AGCT	6 cut(s)	38, 214, 236, 272, 394, 410
AluI	AGCT	6 cut(s)	38, 214, 236, 272, 394, 410
Alw21I	GWGCWC	1 cut(s)	349
Alw26I	GTCTC	2 cut(s)	79, 170
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	4 cut(s)	63, 66, 211, 374
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	117
Bbv12I	GWGCWC	1 cut(s)	349
BbvI	GCAGC	4 cut(s)	75, 78, 223, 386
BccI	CCATC	3 cut(s)	130, 295, 362
BciT130I	CCWGG	2 cut(s)	56, 141
BcoDI	GTCTC	2 cut(s)	79, 170
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	118
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	4 cut(s)	64, 67, 212, 375
BlsI	GCNGC	4 cut(s)	65, 68, 213, 376
Bme1390I	CCNGG	2 cut(s)	56, 141
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	2 cut(s)	56, 141
BmrI	ACTGGG	1 cut(s)	117
BmsI	GCATC	1 cut(s)	361
BmuI	ACTGGG	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	329
BsaI	GGTCTC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	54
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	2 cut(s)	56, 141
BseDI	CCNNGG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	48, 362
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	2 cut(s)	326, 329
BseXI	GCAGC	4 cut(s)	75, 78, 223, 386
BshFI	GGCC	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	349
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	2 cut(s)	79, 170
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	349
Bsp143I	GATC	1 cut(s)	379
BspACI	CCGC	1 cut(s)	243
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	47, 361
BspLI	GGNNCC	1 cut(s)	250
BspTNI	GGTCTC	1 cut(s)	79
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	54
BssMI	GATC	1 cut(s)	379
Bst2UI	CCWGG	2 cut(s)	56, 141
Bst4CI	ACNGT	2 cut(s)	289, 364
BstC8I	GCNNGC	3 cut(s)	61, 216, 247
BstDEI	CTNAG	2 cut(s)	34, 348
BstH2I	RGCGCY	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	117
BstKTI	GATC	1 cut(s)	382
BstMAI	GTCTC	2 cut(s)	79, 170
BstMBI	GATC	1 cut(s)	379
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 220, 242
BstNI	CCWGG	2 cut(s)	56, 141
BstNSI	RCATGY	1 cut(s)	63
BstSCI	CCNGG	2 cut(s)	54, 139
BstV1I	GCAGC	4 cut(s)	75, 78, 223, 386
BstX2I	RGATCY	1 cut(s)	379
BstYI	RGATCY	1 cut(s)	379
BsuRI	GGCC	1 cut(s)	167
BtgZI	GCGATG	1 cut(s)	340
BtsIMutI	CAGTG	2 cut(s)	258, 360
Cac8I	GCNNGC	3 cut(s)	61, 216, 247
CfoI	GCGC	1 cut(s)	117
CseI	GACGC	1 cut(s)	153
CviAII	CATG	1 cut(s)	60
DdeI	CTNAG	2 cut(s)	34, 348
DpnI	GATC	1 cut(s)	381
DpnII	GATC	1 cut(s)	379
EaeI	YGGCCR	1 cut(s)	165
Eco31I	GGTCTC	1 cut(s)	79
Eco47III	AGCGCT	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	54, 139
FaeI	CATG	1 cut(s)	63
FaiI	YATR	2 cut(s)	61, 200
FaqI	GGGAC	1 cut(s)	318
FatI	CATG	1 cut(s)	59
Fnu4HI	GCNGC	4 cut(s)	64, 67, 212, 375
Fsp4HI	GCNGC	4 cut(s)	64, 67, 212, 375
FspBI	CTAG	1 cut(s)	78
GlaI	GCGC	1 cut(s)	116
GluI	GCNGC	4 cut(s)	64, 67, 212, 375
HaeII	RGCGCY	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	167
HgaI	GACGC	1 cut(s)	153
HhaI	GCGC	1 cut(s)	117
Hin1II	CATG	1 cut(s)	63
Hin6I	GCGC	1 cut(s)	115
HinP1I	GCGC	1 cut(s)	115
HindIII	AAGCTT	1 cut(s)	408
HinfI	GANTC	2 cut(s)	178, 275
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	3 cut(s)	129, 351, 384
Hpy188III	TCNNGA	4 cut(s)	135, 281, 368, 400
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	1 cut(s)	401
HpyAV	CCTTC	2 cut(s)	40, 52
HpyCH4III	ACNGT	2 cut(s)	289, 364
HpyCH4V	TGCA	2 cut(s)	63, 374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 220, 242
HpyF3I	CTNAG	2 cut(s)	34, 348
Hsp92II	CATG	1 cut(s)	63
HspAI	GCGC	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	379
LmnI	GCTCC	2 cut(s)	254, 269
Lsp1109I	GCAGC	4 cut(s)	75, 78, 223, 386
LweI	GCATC	1 cut(s)	361
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	1 cut(s)	238
MalI	GATC	1 cut(s)	381
MboI	GATC	1 cut(s)	379
MboII	GAAGA	4 cut(s)	12, 217, 347, 350
MflI	RGATCY	1 cut(s)	379
MhlI	GDGCHC	1 cut(s)	349
MlyI	GAGTC	1 cut(s)	172
MnlI	CCTC	2 cut(s)	304, 307
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	183, 412
MslI	CAYNNNNRTG	1 cut(s)	236
MspA1I	CMGCKG	2 cut(s)	214, 236
MspR9I	CCNGG	2 cut(s)	56, 141
MvaI	CCWGG	2 cut(s)	56, 141
MwoI	GCNNNNNNNGC	3 cut(s)	35, 220, 242
NdeII	GATC	1 cut(s)	379
NlaIII	CATG	1 cut(s)	63
NlaIV	GGNNCC	1 cut(s)	250
NmuCI	GTSAC	1 cut(s)	238
NspI	RCATGY	1 cut(s)	63
OliI	CACNNNNGTG	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	65, 68, 213, 376
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
Psp6I	CCWGG	2 cut(s)	54, 139
PspGI	CCWGG	2 cut(s)	54, 139
PspN4I	GGNNCC	1 cut(s)	250
PsuI	RGATCY	1 cut(s)	379
PvuII	CAGCTG	2 cut(s)	214, 236
RseI	CAYNNNNRTG	1 cut(s)	236
SaqAI	TTAA	2 cut(s)	183, 412
SatI	GCNGC	4 cut(s)	64, 67, 212, 375
Sau3AI	GATC	1 cut(s)	379
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	2 cut(s)	56, 141
SduI	GDGCHC	1 cut(s)	349
SetI	ASST	8 cut(s)	40, 142, 192, 216, 238, 274, 396, 412
SfaNI	GCATC	1 cut(s)	361
SmiMI	CAYNNNNRTG	1 cut(s)	236
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
SphI	GCATGC	1 cut(s)	63
SsiI	CCGC	1 cut(s)	243
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	54, 139
TaaI	ACNGT	2 cut(s)	289, 364
TaqI	TCGA	1 cut(s)	399
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	183, 412
Tru9I	TTAA	2 cut(s)	183, 412
TscAI	CASTG	2 cut(s)	265, 367
TseFI	GTSAC	1 cut(s)	238
TseI	GCWGC	4 cut(s)	63, 66, 211, 374
Tsp45I	GTSAC	1 cut(s)	238
TspRI	CASTG	2 cut(s)	265, 367
XceI	RCATGY	1 cut(s)	63
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.