Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

30525861 .. 30526491

Gene Structure 631 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1230300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 201 bp

ATGGCCGCCATCACCGGAGCTTCCTCGATCTCCCTCCTCCGCTCCGCCCCCCAACAGTCCCACCAAAATCTCGCATTATCCAGGACAAATGGTTTGAAGTCGGTTTCACTTGCTGGTTATGGAAGAAGCTCCCTTTCTTTCAGGTTGCAGCAACGCTCCTTGCGGCTTCGTGTTTCCTGCGCTGTATGTGTTTCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

67

Amino Acids

6.99

Weight (kDa)

11.88

Isoelectric Point (pI)

65.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	42
AciI	CCGC	4 cut(s)	6, 40, 45, 163
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	1 cut(s)	97
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	2 cut(s)	20, 129
AluI	AGCT	2 cut(s)	20, 129
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	148
ArsI	GACNNNNNNTTYG	2 cut(s)	76, 108
AspLEI	GCGC	1 cut(s)	182
AsuHPI	GGTGA	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	17
BciT130I	CCWGG	1 cut(s)	82
BisI	GCNGC	3 cut(s)	6, 149, 164
BlsI	GCNGC	3 cut(s)	7, 150, 165
Bme1390I	CCNGG	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	82
BsaWI	WCCGGW	1 cut(s)	14
BseBI	CCWGG	1 cut(s)	82
BseRI	GAGGAG	1 cut(s)	26
BseXI	GCAGC	1 cut(s)	160
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	43
BsmFI	GGGAC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	1 cut(s)	27
BspACI	CCGC	4 cut(s)	6, 40, 45, 163
BspANI	GGCC	1 cut(s)	5
BsrBI	CCGCTC	1 cut(s)	42
BssMI	GATC	1 cut(s)	27
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	57
BstHHI	GCGC	1 cut(s)	182
BstKTI	GATC	1 cut(s)	30
BstMBI	GATC	1 cut(s)	27
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	5
CfoI	GCGC	1 cut(s)	182
CviJI	RGCY	4 cut(s)	5, 20, 129, 166
CviKI_1	RGCY	4 cut(s)	5, 20, 129, 166
DpnI	GATC	1 cut(s)	29
DpnII	GATC	1 cut(s)	27
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	34
EcoRII	CCWGG	1 cut(s)	80
FaiI	YATR	2 cut(s)	120, 187
FaqI	GGGAC	1 cut(s)	43
Fnu4HI	GCNGC	3 cut(s)	6, 149, 164
Fsp4HI	GCNGC	3 cut(s)	6, 149, 164
GlaI	GCGC	1 cut(s)	181
GluI	GCNGC	3 cut(s)	6, 149, 164
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	15
HhaI	GCGC	1 cut(s)	182
Hin6I	GCGC	1 cut(s)	180
HinP1I	GCGC	1 cut(s)	180
HpaII	CCGG	1 cut(s)	15
HphI	GGTGA	1 cut(s)	4
HpyCH4III	ACNGT	1 cut(s)	57
HpyCH4V	TGCA	1 cut(s)	148
HspAI	GCGC	1 cut(s)	180
Kzo9I	GATC	1 cut(s)	27
LmnI	GCTCC	4 cut(s)	17, 47, 134, 161
LpnPI	CCDG	6 cut(s)	28, 67, 94, 99, 127, 190
Lsp1109I	GCAGC	1 cut(s)	160
MalI	GATC	1 cut(s)	29
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	1 cut(s)	27
MboII	GAAGA	1 cut(s)	135
MnlI	CCTC	3 cut(s)	34, 44, 47
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	82
MvaI	CCWGG	1 cut(s)	82
NdeII	GATC	1 cut(s)	27
PfoI	TCCNGGA	1 cut(s)	80
PkrI	GCNGC	3 cut(s)	7, 150, 165
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
SatI	GCNGC	3 cut(s)	6, 149, 164
Sau3AI	GATC	1 cut(s)	27
ScrFI	CCNGG	1 cut(s)	82
SetI	ASST	3 cut(s)	22, 131, 146
SsiI	CCGC	4 cut(s)	6, 40, 45, 163
StyD4I	CCNGG	1 cut(s)	80
TaaI	ACNGT	1 cut(s)	57
TaqI	TCGA	1 cut(s)	26
TauI	GCSGC	2 cut(s)	8, 166
TseI	GCWGC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.