Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Reverse (-)

29120953 .. 29123324

Gene Structure 2372 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G335300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCGCCATCTCAGGAGCTTCTTCGATCTCCCTCCGCTCTATTCCGCCTCGCTCTCATCAAAATCTCGCATTGTCCAGGACTAATGGTTTGAGGTCAATTTCACTTTCTGATCACGGAAGAAGTTCCCTTTCTTTCGGGTTGCAGCAACGTTCAGTACGCCTTTCTGTTTCCTGCGCTCAGGCCAAGCCAGAAACAGTGGAAAAGGTGTGTACGATAGTAAGAAAGCAACTTGCATTACCAGATGACTCTGCAGTTACCGGCGAGTCAAAATTTGCAGCTCTTGGAGCTGATTCTCTTGATACGGTTGAGATTGTGATGGGACTTGAGGAAGAATTTGGTATTAGCGTGGAAGAGGATAGTGCTCAGAGCATTGCAACAGTGCAGGATGCTGCCGATCTTATTGAGAAGATCATTGAGAAAAACAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

145

Amino Acids

15.25

Weight (kDa)

5.18

Isoelectric Point (pI)

60.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	3 cut(s)	6, 37, 47
AclI	AACGTT	1 cut(s)	151
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	272, 335
AfaI	GTAC	2 cut(s)	159, 214
AjnI	CCWGG	1 cut(s)	77
AluBI	AGCT	3 cut(s)	20, 281, 290
AluI	AGCT	3 cut(s)	20, 281, 290
Alw21I	GWGCWC	1 cut(s)	367
AoxI	GGCC	2 cut(s)	3, 183
ApeKI	GCWGC	3 cut(s)	145, 278, 392
ApoI	RAATTY	2 cut(s)	272, 335
ArsI	GACNNNNNNTTYG	2 cut(s)	73, 105
Asp700I	GAANNNNTTC	1 cut(s)	124
AspLEI	GCGC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	367
BbvI	GCAGC	3 cut(s)	157, 290, 379
BccI	CCATC	2 cut(s)	17, 313
BciT130I	CCWGG	1 cut(s)	79
BclI	TGATCA	1 cut(s)	112
BfmI	CTRYAG	1 cut(s)	252
BisI	GCNGC	4 cut(s)	6, 146, 279, 393
BlsI	GCNGC	4 cut(s)	7, 147, 280, 394
Bme1390I	CCNGG	1 cut(s)	79
BmrFI	CCNGG	1 cut(s)	79
BmsI	GCATC	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	180
BpuEI	CTTGAG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	79
BseGI	GGATG	1 cut(s)	394
BseMI	GCAATG	1 cut(s)	372
BseMII	CTCAG	3 cut(s)	27, 194, 380
BseXI	GCAGC	3 cut(s)	157, 290, 379
BsgI	GTGCAG	1 cut(s)	404
BshFI	GGCC	2 cut(s)	5, 185
BsiHKAI	GWGCWC	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	261
BslFI	GGGAC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	5, 185
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	4 cut(s)	27, 112, 397, 411
BspACI	CCGC	3 cut(s)	6, 37, 47
BspANI	GGCC	2 cut(s)	5, 185
BspCNI	CTCAG	3 cut(s)	26, 193, 379
BspMAI	CTGCAG	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	372
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssMI	GATC	4 cut(s)	27, 112, 397, 411
Bst2UI	CCWGG	1 cut(s)	79
Bst4CI	ACNGT	3 cut(s)	199, 307, 382
Bst6I	CTCTTC	1 cut(s)	348
BstDEI	CTNAG	4 cut(s)	13, 180, 366, 432
BstF5I	GGATG	1 cut(s)	394
BstHHI	GCGC	1 cut(s)	179
BstKTI	GATC	4 cut(s)	30, 115, 400, 414
BstMBI	GATC	4 cut(s)	27, 112, 397, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	79
BstSCI	CCNGG	1 cut(s)	77
BstSFI	CTRYAG	1 cut(s)	252
BstV1I	GCAGC	3 cut(s)	157, 290, 379
BsuRI	GGCC	2 cut(s)	5, 185
BtsCI	GGATG	1 cut(s)	394
BtsIMutI	CAGTG	2 cut(s)	204, 387
CfoI	GCGC	1 cut(s)	179
Cfr10I	RCCGGY	1 cut(s)	260
Csp6I	GTAC	2 cut(s)	158, 213
CviJI	RGCY	7 cut(s)	5, 20, 185, 190, 281, 290, 431
CviKI_1	RGCY	7 cut(s)	5, 20, 185, 190, 281, 290, 431
CviQI	GTAC	2 cut(s)	158, 213
DdeI	CTNAG	4 cut(s)	13, 180, 366, 432
DpnI	GATC	4 cut(s)	29, 114, 399, 413
DpnII	GATC	4 cut(s)	27, 112, 397, 411
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
EciI	GGCGGA	1 cut(s)	36
EcoRII	CCWGG	1 cut(s)	77
FaqI	GGGAC	1 cut(s)	336
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	6, 146, 279, 393
FokI	GGATG	1 cut(s)	401
Fsp4HI	GCNGC	4 cut(s)	6, 146, 279, 393
GlaI	GCGC	1 cut(s)	178
GluI	GCNGC	4 cut(s)	6, 146, 279, 393
HaeIII	GGCC	2 cut(s)	5, 185
HapII	CCGG	1 cut(s)	261
HhaI	GCGC	1 cut(s)	179
Hin6I	GCGC	1 cut(s)	177
HinP1I	GCGC	1 cut(s)	177
HinfI	GANTC	3 cut(s)	248, 266, 293
HpaII	CCGG	1 cut(s)	261
Hpy166II	GTNNAC	1 cut(s)	213
Hpy188I	TCNGA	2 cut(s)	112, 369
Hpy188III	TCNNGA	2 cut(s)	15, 299
Hpy8I	GTNNAC	1 cut(s)	213
HpyCH4III	ACNGT	3 cut(s)	199, 307, 382
HpyCH4IV	ACGT	1 cut(s)	151
HpyCH4V	TGCA	6 cut(s)	145, 236, 254, 278, 377, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	4 cut(s)	13, 180, 366, 432
HpySE526I	ACGT	1 cut(s)	151
HspAI	GCGC	1 cut(s)	177
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	27, 112, 397, 411
LmnI	GCTCC	2 cut(s)	17, 287
LpnPI	CCDG	8 cut(s)	64, 91, 167, 187, 204, 255, 274, 371
Lsp1109I	GCAGC	3 cut(s)	157, 290, 379
LweI	GCATC	1 cut(s)	379
MaeII	ACGT	1 cut(s)	151
MaeIII	GTNAC	1 cut(s)	256
MalI	GATC	4 cut(s)	29, 114, 399, 413
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	4 cut(s)	27, 112, 397, 411
MboII	GAAGA	5 cut(s)	15, 132, 344, 365, 421
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	3 cut(s)	99, 272, 335
MlyI	GAGTC	2 cut(s)	242, 275
MnlI	CCTC	5 cut(s)	44, 60, 87, 322, 349
MroXI	GAANNNNTTC	1 cut(s)	124
MspI	CCGG	1 cut(s)	261
MspR9I	CCNGG	1 cut(s)	79
MvaI	CCWGG	1 cut(s)	79
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	4 cut(s)	27, 112, 397, 411
PdmI	GAANNNNTTC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	293
PfoI	TCCNGGA	1 cut(s)	77
PkrI	GCNGC	4 cut(s)	7, 147, 280, 394
PleI	GAGTC	2 cut(s)	242, 274
PpsI	GAGTC	2 cut(s)	242, 274
Psp1406I	AACGTT	1 cut(s)	151
Psp6I	CCWGG	1 cut(s)	77
PspGI	CCWGG	1 cut(s)	77
PstI	CTGCAG	1 cut(s)	256
RsaI	GTAC	2 cut(s)	159, 214
RsaNI	GTAC	2 cut(s)	158, 213
SatI	GCNGC	4 cut(s)	6, 146, 279, 393
Sau3AI	GATC	4 cut(s)	27, 112, 397, 411
SchI	GAGTC	2 cut(s)	242, 275
ScrFI	CCNGG	1 cut(s)	79
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	6 cut(s)	22, 98, 154, 210, 283, 292
SfaNI	GCATC	1 cut(s)	379
SfcI	CTRYAG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	3 cut(s)	99, 272, 335
SsiI	CCGC	3 cut(s)	6, 37, 47
StyD4I	CCNGG	1 cut(s)	77
TaaI	ACNGT	3 cut(s)	199, 307, 382
TaiI	ACGT	1 cut(s)	154
TaqI	TCGA	1 cut(s)	26
TasI	AATT	3 cut(s)	99, 272, 335
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	2 cut(s)	204, 387
TseI	GCWGC	3 cut(s)	145, 278, 392
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	2 cut(s)	204, 387
XapI	RAATTY	2 cut(s)	272, 335
XmnI	GAANNNNTTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.