Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Reverse (-)

1391632 .. 1392954

Gene Structure 1323 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G05020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCGACTCAATTCAGCGCTTCTGTCTCATTGCAAACTTCTTGTCTGGCAACAACAAGGATTAGTTTCCAAAAGCCAGCTTTGATTTCCAACCATGGAAAGACTAATCTATCCTTCAACCTCCGCCGTTCAATCCCATCTCGCCGCCTCTCTGTTTCTTGCGCGGCAAAACAAGAGACGATAGAGAAAGTGTCTGCTATAGTTAAGAAGCAACTATCACTTACACCGGATAAAAAAGTCGTTGCAGAAACCAAATTTGCTGACCTTGGAGCAGATTCTCTCGACACGGTTGAGATAGTAATGGGTTTAGAGGAAGAGTTTAACATCCAAATGGCCGAAGAGAAAGCACAGAAGATTGCCACAGTTGAGCAAGCTGCTGAACTCATTGAAGAGCTCATCAACGAGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

137

Amino Acids

15.06

Weight (kDa)

6.61

Isoelectric Point (pI)

53.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	63 - 129	6.2e-10	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	3 cut(s)	124, 145, 164
AcoI	YGGCCR	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	254
AfeI	AGCGCT	1 cut(s)	19
AgsI	TTSAA	3 cut(s)	118, 132, 389
AluBI	AGCT	3 cut(s)	80, 374, 394
AluI	AGCT	3 cut(s)	80, 374, 394
Alw21I	GWGCWC	1 cut(s)	396
Alw26I	GTCTC	2 cut(s)	31, 170
Aor51HI	AGCGCT	1 cut(s)	19
AoxI	GGCC	1 cut(s)	333
ApeKI	GCWGC	1 cut(s)	374
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	28, 60
AspLEI	GCGC	2 cut(s)	20, 164
BanII	GRGCYC	1 cut(s)	396
Bbv12I	GWGCWC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	31, 170
BfmI	CTRYAG	1 cut(s)	198
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	3 cut(s)	145, 165, 375
BlsI	GCNGC	3 cut(s)	146, 166, 376
BsaJI	CCNNGG	2 cut(s)	94, 265
BsaWI	WCCGGW	1 cut(s)	226
Bse3DI	GCAATG	1 cut(s)	29
BseDI	CCNNGG	2 cut(s)	94, 265
BseGI	GGATG	1 cut(s)	324
BseMI	GCAATG	1 cut(s)	29
BseXI	GCAGC	1 cut(s)	361
Bsh1236I	CGCG	1 cut(s)	164
BshFI	GGCC	1 cut(s)	335
BsiHKAI	GWGCWC	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	227
BsmAI	GTCTC	2 cut(s)	31, 170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	1 cut(s)	335
Bsp1286I	GDGCHC	1 cut(s)	396
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	124, 145, 164
BspANI	GGCC	1 cut(s)	335
BspFNI	CGCG	1 cut(s)	164
BspQI	GCTCTTC	1 cut(s)	384
BsrDI	GCAATG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	94, 265
BssT1I	CCWWGG	2 cut(s)	94, 265
Bst4CI	ACNGT	2 cut(s)	289, 364
Bst6I	CTCTTC	3 cut(s)	309, 333, 384
BstC8I	GCNNGC	2 cut(s)	78, 372
BstDSI	CCRYGG	1 cut(s)	94
BstF5I	GGATG	1 cut(s)	324
BstFNI	CGCG	1 cut(s)	164
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 164
BstMAI	GTCTC	2 cut(s)	31, 170
BstSFI	CTRYAG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	1 cut(s)	361
BsuRI	GGCC	1 cut(s)	335
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	78, 372
CfoI	GCGC	2 cut(s)	20, 164
CviAII	CATG	1 cut(s)	95
CviJI	RGCY	5 cut(s)	76, 80, 335, 374, 394
CviKI_1	RGCY	5 cut(s)	76, 80, 335, 374, 394
EaeI	YGGCCR	1 cut(s)	333
Eam1104I	CTCTTC	3 cut(s)	309, 333, 384
EarI	CTCTTC	3 cut(s)	309, 333, 384
EciI	GGCGGA	1 cut(s)	113
Ecl136II	GAGCTC	1 cut(s)	394
Eco130I	CCWWGG	2 cut(s)	94, 265
Eco24I	GRGCYC	1 cut(s)	396
Eco47III	AGCGCT	1 cut(s)	19
Eco53kI	GAGCTC	1 cut(s)	394
EcoICRI	GAGCTC	1 cut(s)	394
EcoT14I	CCWWGG	2 cut(s)	94, 265
EcoT38I	GRGCYC	1 cut(s)	396
ErhI	CCWWGG	2 cut(s)	94, 265
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	1 cut(s)	98
FaiI	YATR	2 cut(s)	96, 200
FatI	CATG	1 cut(s)	94
Fnu4HI	GCNGC	3 cut(s)	145, 165, 375
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	396
Fsp4HI	GCNGC	3 cut(s)	145, 165, 375
GlaI	GCGC	2 cut(s)	19, 163
GluI	GCNGC	3 cut(s)	145, 165, 375
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	335
HapII	CCGG	1 cut(s)	227
HhaI	GCGC	2 cut(s)	20, 164
Hin1II	CATG	1 cut(s)	98
Hin6I	GCGC	2 cut(s)	18, 162
HinP1I	GCGC	2 cut(s)	18, 162
HinfI	GANTC	2 cut(s)	7, 275
HpaII	CCGG	1 cut(s)	227
Hpy188III	TCNNGA	1 cut(s)	281
HpyAV	CCTTC	1 cut(s)	124
HpyCH4III	ACNGT	2 cut(s)	289, 364
HpyCH4V	TGCA	2 cut(s)	34, 245
Hsp92II	CATG	1 cut(s)	98
HspAI	GCGC	2 cut(s)	18, 162
LguI	GCTCTTC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	269
LpnPI	CCDG	3 cut(s)	32, 90, 240
Lsp1109I	GCAGC	1 cut(s)	361
MboII	GAAGA	4 cut(s)	326, 350, 364, 401
MhlI	GDGCHC	1 cut(s)	396
MluCI	AATT	2 cut(s)	11, 254
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	131, 158, 304
MseI	TTAA	2 cut(s)	204, 321
MslI	CAYNNNNRTG	1 cut(s)	329
MspI	CCGG	1 cut(s)	227
MvnI	CGCG	1 cut(s)	164
NcoI	CCATGG	1 cut(s)	94
NlaIII	CATG	1 cut(s)	98
PciSI	GCTCTTC	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	3 cut(s)	146, 166, 376
Psp124BI	GAGCTC	1 cut(s)	396
RseI	CAYNNNNRTG	1 cut(s)	329
SacI	GAGCTC	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	384
SaqAI	TTAA	2 cut(s)	204, 321
SatI	GCNGC	3 cut(s)	145, 165, 375
SduI	GDGCHC	1 cut(s)	396
SetI	ASST	5 cut(s)	82, 123, 267, 376, 396
SfcI	CTRYAG	1 cut(s)	198
SmiMI	CAYNNNNRTG	1 cut(s)	329
Sse9I	AATT	2 cut(s)	11, 254
SsiI	CCGC	3 cut(s)	124, 145, 164
SstI	GAGCTC	1 cut(s)	396
StyI	CCWWGG	2 cut(s)	94, 265
TaaI	ACNGT	2 cut(s)	289, 364
TaqI	TCGA	1 cut(s)	282
TasI	AATT	2 cut(s)	11, 254
TauI	GCSGC	2 cut(s)	147, 167
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	2 cut(s)	204, 321
Tru9I	TTAA	2 cut(s)	204, 321
TseI	GCWGC	1 cut(s)	374
XapI	RAATTY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.