Rroxscaffold_5G00363280

Carrier of the growing fatty acid chain in fatty acid biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0002077
Physical Location & Seq
Reverse (-)
44419221 .. 44421774
2554 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00363280.1

Sequence Viewer

Length: 414 bp
ATGGCTTCTCTTTCTCAATCTTCTACTGCCTTCTCAGCTTCCTTCAAACCCACCCTGGCATGCAGCAGCAGGGTCTCTAGTTTGAAATCAGTTTCTTTTTCCATTACTGGAAAGCGCTTCCCATCTCTGACTTCAAGAGCTGGACGCTTTCAAGTTTCCTGTTCGGCCAAACCAGAGACTCTTAACAAGGTCTGTGATATAGTGAAGAAGCAGCTGGCTTTGCCTGATGACACAGCTGTGACTGCAGGTTCCAAGTTCACTGAACTTGGAGCTGATTCTCTTGACACAGTTGAGATTGTGATGGGACTTGAGGAGGAGTTTGGTATCAGCGTGGAAGAAGAAAGTGCTCAGACCATCGCCACTGTTCAAGATGCAGCAGATCTGATTGAGAAGCTTGTGGAGAAGAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP-binding

Protein Analysis

137

Amino Acids

14.5

Weight (kDa)

5.03

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP-binding PF00550 63 - 129 9.6e-11 Phosphopantetheine attachment site
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 165
AfeI AGCGCT 1 cut(s) 116
AgsI TTSAA 5 cut(s) 46, 85, 135, 152, 368
AjnI CCWGG 1 cut(s) 54
AleI CACNNNNGTG 1 cut(s) 236
AluBI AGCT 7 cut(s) 38, 140, 214, 236, 272, 394, 410
AluI AGCT 7 cut(s) 38, 140, 214, 236, 272, 394, 410
Alw21I GWGCWC 1 cut(s) 349
Alw26I GTCTC 2 cut(s) 79, 170
Aor51HI AGCGCT 1 cut(s) 116
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 4 cut(s) 63, 66, 211, 374
AspLEI GCGC 1 cut(s) 117
Bbv12I GWGCWC 1 cut(s) 349
BbvI GCAGC 4 cut(s) 75, 78, 223, 386
BccI CCATC 3 cut(s) 130, 295, 362
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 2 cut(s) 79, 170
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 1 cut(s) 118
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 379
BisI GCNGC 4 cut(s) 64, 67, 212, 375
BlsI GCNGC 4 cut(s) 65, 68, 213, 376
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 250
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 329
BsaI GGTCTC 1 cut(s) 79
BsaJI CCNNGG 1 cut(s) 54
Bse1I ACTGG 1 cut(s) 112
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 48, 362
BseNI ACTGG 1 cut(s) 112
BseRI GAGGAG 2 cut(s) 326, 329
BseXI GCAGC 4 cut(s) 75, 78, 223, 386
BshFI GGCC 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 349
BslFI GGGAC 1 cut(s) 318
BsmAI GTCTC 2 cut(s) 79, 170
BsmFI GGGAC 1 cut(s) 318
BsnI GGCC 1 cut(s) 167
Bso31I GGTCTC 1 cut(s) 79
Bsp1286I GDGCHC 1 cut(s) 349
Bsp143I GATC 1 cut(s) 379
BspANI GGCC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 47, 361
BspLI GGNNCC 1 cut(s) 250
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 79
BsrI ACTGG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 379
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 289, 364
BstC8I GCNNGC 2 cut(s) 61, 216
BstDEI CTNAG 2 cut(s) 34, 348
BstH2I RGCGCY 1 cut(s) 118
BstHHI GCGC 1 cut(s) 117
BstKTI GATC 1 cut(s) 382
BstMAI GTCTC 2 cut(s) 79, 170
BstMBI GATC 1 cut(s) 379
BstMWI GCNNNNNNNGC 3 cut(s) 35, 220, 242
BstNI CCWGG 1 cut(s) 56
BstNSI RCATGY 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 4 cut(s) 75, 78, 223, 386
BstX2I RGATCY 1 cut(s) 379
BstYI RGATCY 1 cut(s) 379
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 340
BtsIMutI CAGTG 2 cut(s) 258, 360
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 2 cut(s) 61, 216
CfoI GCGC 1 cut(s) 117
CseI GACGC 1 cut(s) 153
CviAII CATG 1 cut(s) 60
DdeI CTNAG 2 cut(s) 34, 348
DpnI GATC 1 cut(s) 381
DpnII GATC 1 cut(s) 379
EaeI YGGCCR 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 79
Eco47III AGCGCT 1 cut(s) 116
EcoRII CCWGG 1 cut(s) 54
FaeI CATG 1 cut(s) 63
FaiI YATR 2 cut(s) 61, 200
FaqI GGGAC 1 cut(s) 318
FatI CATG 1 cut(s) 59
Fnu4HI GCNGC 4 cut(s) 64, 67, 212, 375
Fsp4HI GCNGC 4 cut(s) 64, 67, 212, 375
FspBI CTAG 1 cut(s) 78
GlaI GCGC 1 cut(s) 116
GluI GCNGC 4 cut(s) 64, 67, 212, 375
HaeII RGCGCY 1 cut(s) 118
HaeIII GGCC 1 cut(s) 167
HgaI GACGC 1 cut(s) 153
HhaI GCGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 63
Hin6I GCGC 1 cut(s) 115
HinP1I GCGC 1 cut(s) 115
HindIII AAGCTT 2 cut(s) 392, 408
HinfI GANTC 2 cut(s) 178, 275
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 3 cut(s) 129, 351, 384
Hpy188III TCNNGA 3 cut(s) 135, 281, 368
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 2 cut(s) 40, 52
HpyCH4III ACNGT 2 cut(s) 289, 364
HpyCH4V TGCA 3 cut(s) 63, 245, 374
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 220, 242
HpyF3I CTNAG 2 cut(s) 34, 348
Hsp92II CATG 1 cut(s) 63
HspAI GCGC 1 cut(s) 115
Kzo9I GATC 1 cut(s) 379
LmnI GCTCC 1 cut(s) 269
Lsp1109I GCAGC 4 cut(s) 75, 78, 223, 386
LweI GCATC 1 cut(s) 361
MaeI CTAG 1 cut(s) 78
MaeIII GTNAC 1 cut(s) 238
MalI GATC 1 cut(s) 381
MboI GATC 1 cut(s) 379
MboII GAAGA 4 cut(s) 12, 217, 347, 350
MflI RGATCY 1 cut(s) 379
MhlI GDGCHC 1 cut(s) 349
MlyI GAGTC 1 cut(s) 172
MnlI CCTC 2 cut(s) 304, 307
MseI TTAA 2 cut(s) 183, 412
MslI CAYNNNNRTG 1 cut(s) 236
MspA1I CMGCKG 2 cut(s) 214, 236
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 35, 220, 242
NdeII GATC 1 cut(s) 379
NlaIII CATG 1 cut(s) 63
NlaIV GGNNCC 1 cut(s) 250
NmuCI GTSAC 1 cut(s) 238
NspI RCATGY 1 cut(s) 63
OliI CACNNNNGTG 1 cut(s) 236
PaeI GCATGC 1 cut(s) 63
PfeI GAWTC 1 cut(s) 275
PkrI GCNGC 4 cut(s) 65, 68, 213, 376
PleI GAGTC 1 cut(s) 172
PpsI GAGTC 1 cut(s) 172
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 247
PsuI RGATCY 1 cut(s) 379
PvuII CAGCTG 2 cut(s) 214, 236
RseI CAYNNNNRTG 1 cut(s) 236
SaqAI TTAA 2 cut(s) 183, 412
SatI GCNGC 4 cut(s) 64, 67, 212, 375
Sau3AI GATC 1 cut(s) 379
SchI GAGTC 1 cut(s) 172
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 349
SetI ASST 9 cut(s) 40, 142, 192, 216, 238, 250, 274, 396, 412
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 243
SmiMI CAYNNNNRTG 1 cut(s) 236
SmlI CTYRAG 1 cut(s) 308
SmoI CTYRAG 1 cut(s) 308
SphI GCATGC 1 cut(s) 63
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 289, 364
TfiI GAWTC 1 cut(s) 275
Tru1I TTAA 2 cut(s) 183, 412
Tru9I TTAA 2 cut(s) 183, 412
TscAI CASTG 2 cut(s) 265, 367
TseFI GTSAC 1 cut(s) 238
TseI GCWGC 4 cut(s) 63, 66, 211, 374
Tsp45I GTSAC 1 cut(s) 238
TspRI CASTG 2 cut(s) 265, 367
XceI RCATGY 1 cut(s) 63
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.