Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

22050652 .. 22050834

Gene Structure 183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1091400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGGATGTGTCTGCTGGCTCAAAGTTTTCAGAACTTGGTGCCGATTCTCTTGACACAGTTGAGATTGTGATGGGGCTTGAGGAGGCATTTGGCATCACCATGAAGGAAGAAAATGCCCAGACCATCGCCACTGTTCAAGATGCAGCTGATCTGACTGAGGATCTCATTGCGAAGAGTGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

61

Amino Acids

6.31

Weight (kDa)

4.05

Isoelectric Point (pI)

30.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	4 - 50	1.4e-08	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	38
AclWI	GGATC	1 cut(s)	168
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	1 cut(s)	146
AluI	AGCT	1 cut(s)	146
AlwI	GGATC	1 cut(s)	168
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	1 cut(s)	88
BanI	GGYRCC	1 cut(s)	38
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	64, 131
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
BmiI	GGNNCC	1 cut(s)	40
BmsI	GCATC	2 cut(s)	102, 130
BpuEI	CTTGAG	1 cut(s)	98
Bse3DI	GCAATG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	10
BseMI	GCAATG	1 cut(s)	165
BseMII	CTCAG	1 cut(s)	147
BseRI	GAGGAG	1 cut(s)	95
BseXI	GCAGC	1 cut(s)	155
BshNI	GGYRCC	1 cut(s)	38
Bsp143I	GATC	2 cut(s)	148, 160
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	40
BspPI	GGATC	1 cut(s)	168
BspT107I	GGYRCC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	165
BssMI	GATC	2 cut(s)	148, 160
Bst4CI	ACNGT	2 cut(s)	58, 133
Bst6I	CTCTTC	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	2 cut(s)	151, 163
BstMBI	GATC	2 cut(s)	148, 160
BstV1I	GCAGC	1 cut(s)	155
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	109
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	1 cut(s)	16
CviAII	CATG	1 cut(s)	100
CviJI	RGCY	3 cut(s)	18, 76, 146
CviKI_1	RGCY	3 cut(s)	18, 76, 146
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	2 cut(s)	150, 162
DpnII	GATC	2 cut(s)	148, 160
Eam1104I	CTCTTC	1 cut(s)	167
EarI	CTCTTC	1 cut(s)	167
FaeI	CATG	1 cut(s)	103
FaiI	YATR	1 cut(s)	101
FatI	CATG	1 cut(s)	99
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
Hin1II	CATG	1 cut(s)	103
HinfI	GANTC	1 cut(s)	44
HphI	GGTGA	1 cut(s)	88
Hpy188I	TCNGA	2 cut(s)	31, 153
Hpy188III	TCNNGA	2 cut(s)	50, 137
HpyAV	CCTTC	1 cut(s)	97
HpyCH4III	ACNGT	2 cut(s)	58, 133
HpyCH4V	TGCA	1 cut(s)	143
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	1 cut(s)	103
Kzo9I	GATC	2 cut(s)	148, 160
LpnPI	CCDG	1 cut(s)	131
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	2 cut(s)	102, 130
MalI	GATC	2 cut(s)	150, 162
MboI	GATC	2 cut(s)	148, 160
MboII	GAAGA	1 cut(s)	119
MflI	RGATCY	1 cut(s)	160
MnlI	CCTC	3 cut(s)	73, 76, 151
MseI	TTAA	1 cut(s)	181
MslI	CAYNNNNRTG	1 cut(s)	98
MspA1I	CMGCKG	1 cut(s)	146
NdeII	GATC	2 cut(s)	148, 160
NlaIII	CATG	1 cut(s)	103
NlaIV	GGNNCC	1 cut(s)	40
PfeI	GAWTC	1 cut(s)	44
PkrI	GCNGC	1 cut(s)	145
PspN4I	GGNNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	98
SaqAI	TTAA	1 cut(s)	181
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	148, 160
SetI	ASST	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	102, 130
SgeI	CNNG	7 cut(s)	27, 47, 62, 89, 112, 130, 149
SmiMI	CAYNNNNRTG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	58, 133
TfiI	GAWTC	1 cut(s)	44
Tru1I	TTAA	1 cut(s)	181
Tru9I	TTAA	1 cut(s)	181
TscAI	CASTG	1 cut(s)	136
TseI	GCWGC	1 cut(s)	143
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.