Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

11243627 .. 11246581

Gene Structure 2955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G142900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCTTCTCTCACACAAGCTTCTACTGCTCTTTCAACCTCCTTCAAGCCCACCTTGCAGGCAGTCAGCAGCAGGAGCTCTGGTCTGAAGTCAGTTTCCTTTTCCATCACTGGAAAGCGCTTCCCATCTCTCAGTTCCCGACCTGGGCGTTTTCAAGTTTCCTGTTCGGCCAAACCAGAGACTCTGAACAAGGTGTGTGGCATAGTGAAGAAGCAGTTGGCTTTACCCGAAGACACAGCTGTGACCCCAGGCTCAAAGTTTGCTGAACTTGGCGCTGATTCTCTTGACACAGTTGAGATTGTGATGGGACTTGAGGAGGAGTTTGGCATCAGTGTGGAGGAAGAAAGTGCCCAGACCATCGCCACTGTTCAAGATGCAGCAGATCTGATTGAGAAGCTCGTTGAGAAGAAGAGTACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

140

Amino Acids

14.66

Weight (kDa)

5.24

Isoelectric Point (pI)

45.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	168
AcuI	CTGAAG	1 cut(s)	107
AfaI	GTAC	1 cut(s)	415
AfeI	AGCGCT	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	4 cut(s)	36, 46, 155, 371
AjnI	CCWGG	2 cut(s)	142, 247
AjuI	GAANNNNNNNTTGG	2 cut(s)	200, 232
AleI	CACNNNNGTG	1 cut(s)	239
AluBI	AGCT	4 cut(s)	20, 78, 239, 397
AluI	AGCT	4 cut(s)	20, 78, 239, 397
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	1 cut(s)	173
Aor51HI	AGCGCT	1 cut(s)	119
AoxI	GGCC	1 cut(s)	168
ApeKI	GCWGC	2 cut(s)	69, 377
AspLEI	GCGC	2 cut(s)	120, 275
BaeGI	GKGCMC	1 cut(s)	352
BanII	GRGCYC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	80
BbvI	GCAGC	2 cut(s)	81, 389
BccI	CCATC	4 cut(s)	113, 133, 298, 365
BciT130I	CCWGG	2 cut(s)	144, 249
BcoDI	GTCTC	1 cut(s)	173
BfoI	RGCGCY	2 cut(s)	121, 276
BglII	AGATCT	1 cut(s)	382
BisI	GCNGC	2 cut(s)	70, 378
BlsI	GCNGC	2 cut(s)	71, 379
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	144, 249
BmrFI	CCNGG	2 cut(s)	144, 249
BmsI	GCATC	2 cut(s)	336, 364
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	332
BsaJI	CCNNGG	2 cut(s)	143, 247
BsaXI	ACNNNNNCTCC	2 cut(s)	67, 97
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	1 cut(s)	115
BseBI	CCWGG	2 cut(s)	144, 249
BseDI	CCNNGG	2 cut(s)	143, 247
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	1 cut(s)	145
BseNI	ACTGG	1 cut(s)	115
BseRI	GAGGAG	2 cut(s)	329, 332
BseSI	GKGCMC	1 cut(s)	352
BseXI	GCAGC	2 cut(s)	81, 389
BshFI	GGCC	1 cut(s)	170
BsiHKAI	GWGCWC	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	321
BslI	CCNNNNNNNGG	1 cut(s)	144
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	321
BsnI	GGCC	1 cut(s)	170
Bsp1286I	GDGCHC	2 cut(s)	80, 352
Bsp143I	GATC	1 cut(s)	382
BspANI	GGCC	1 cut(s)	170
BspCNI	CTCAG	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	143, 247
BssMI	GATC	1 cut(s)	382
Bst2UI	CCWGG	2 cut(s)	144, 249
Bst4CI	ACNGT	2 cut(s)	292, 367
Bst6I	CTCTTC	1 cut(s)	404
BstC8I	GCNNGC	1 cut(s)	60
BstDEI	CTNAG	1 cut(s)	131
BstH2I	RGCGCY	2 cut(s)	121, 276
BstHHI	GCGC	2 cut(s)	120, 275
BstKTI	GATC	1 cut(s)	385
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	1 cut(s)	382
BstMWI	GCNNNNNNNGC	3 cut(s)	26, 55, 75
BstNI	CCWGG	2 cut(s)	144, 249
BstSCI	CCNGG	2 cut(s)	142, 247
BstSLI	GKGCMC	1 cut(s)	352
BstV1I	GCAGC	2 cut(s)	81, 389
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	1 cut(s)	170
BtgZI	GCGATG	1 cut(s)	343
BtsIMutI	CAGTG	3 cut(s)	108, 337, 363
Cac8I	GCNNGC	1 cut(s)	60
CfoI	GCGC	2 cut(s)	120, 275
Csp6I	GTAC	1 cut(s)	414
CspCI	CAANNNNNGTGG	2 cut(s)	178, 213
CviJI	RGCY	9 cut(s)	5, 20, 49, 78, 170, 221, 239, 252, 397
CviKI_1	RGCY	9 cut(s)	5, 20, 49, 78, 170, 221, 239, 252, 397
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	384
DpnII	GATC	1 cut(s)	382
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	404
EarI	CTCTTC	1 cut(s)	404
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	80
Eco47III	AGCGCT	1 cut(s)	119
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	107
EcoICRI	GAGCTC	1 cut(s)	78
EcoRII	CCWGG	2 cut(s)	142, 247
EcoT38I	GRGCYC	1 cut(s)	80
FaiI	YATR	1 cut(s)	203
FalI	AAGNNNNNCTT	2 cut(s)	38, 70
FaqI	GGGAC	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	70, 378
FriOI	GRGCYC	1 cut(s)	80
Fsp4HI	GCNGC	2 cut(s)	70, 378
GlaI	GCGC	2 cut(s)	119, 274
GluI	GCNGC	2 cut(s)	70, 378
HaeII	RGCGCY	2 cut(s)	121, 276
HaeIII	GGCC	1 cut(s)	170
HhaI	GCGC	2 cut(s)	120, 275
Hin6I	GCGC	2 cut(s)	118, 273
HinP1I	GCGC	2 cut(s)	118, 273
HindIII	AAGCTT	1 cut(s)	18
HinfI	GANTC	2 cut(s)	181, 278
Hpy188I	TCNGA	3 cut(s)	87, 186, 387
Hpy188III	TCNNGA	3 cut(s)	138, 284, 371
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	2 cut(s)	292, 367
HpyCH4V	TGCA	2 cut(s)	58, 377
HpyF10VI	GCNNNNNNNGC	3 cut(s)	26, 55, 75
HpyF3I	CTNAG	1 cut(s)	131
HspAI	GCGC	2 cut(s)	118, 273
Kzo9I	GATC	1 cut(s)	382
LmnI	GCTCC	1 cut(s)	75
Lsp1109I	GCAGC	2 cut(s)	81, 389
LweI	GCATC	2 cut(s)	336, 364
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	384
MboI	GATC	1 cut(s)	382
MboII	GAAGA	4 cut(s)	220, 242, 353, 418
MflI	RGATCY	1 cut(s)	382
MhlI	GDGCHC	2 cut(s)	80, 352
MlyI	GAGTC	1 cut(s)	175
MnlI	CCTC	4 cut(s)	49, 307, 310, 331
MseI	TTAA	1 cut(s)	418
MslI	CAYNNNNRTG	2 cut(s)	239, 332
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	2 cut(s)	144, 249
MvaI	CCWGG	2 cut(s)	144, 249
MwoI	GCNNNNNNNGC	3 cut(s)	26, 55, 75
NdeII	GATC	1 cut(s)	382
NmuCI	GTSAC	1 cut(s)	241
OliI	CACNNNNGTG	1 cut(s)	239
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	2 cut(s)	71, 379
PleI	GAGTC	1 cut(s)	175
PpsI	GAGTC	1 cut(s)	175
Psp124BI	GAGCTC	1 cut(s)	80
Psp6I	CCWGG	2 cut(s)	142, 247
PspGI	CCWGG	2 cut(s)	142, 247
PsuI	RGATCY	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	2 cut(s)	239, 332
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	418
SatI	GCNGC	2 cut(s)	70, 378
Sau3AI	GATC	1 cut(s)	382
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	175
ScrFI	CCNGG	2 cut(s)	144, 249
SduI	GDGCHC	2 cut(s)	80, 352
SetI	ASST	8 cut(s)	22, 41, 56, 80, 145, 195, 241, 399
SfaNI	GCATC	2 cut(s)	336, 364
SmiMI	CAYNNNNRTG	2 cut(s)	239, 332
SmlI	CTYRAG	1 cut(s)	311
SmoI	CTYRAG	1 cut(s)	311
SstI	GAGCTC	1 cut(s)	80
StyD4I	CCNGG	2 cut(s)	142, 247
TaaI	ACNGT	2 cut(s)	292, 367
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	278
Tru1I	TTAA	1 cut(s)	418
Tru9I	TTAA	1 cut(s)	418
TscAI	CASTG	3 cut(s)	115, 337, 370
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	2 cut(s)	69, 377
Tsp45I	GTSAC	1 cut(s)	241
TspRI	CASTG	3 cut(s)	115, 337, 370
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.