Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

14373226 .. 14376126

Gene Structure 2901 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1174500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTTCCCTCGCCCGAGCTTCTACTGCCCTTTCCACCTCCTTCAAGCCCGCTCTGGCACCCAGCAGCAGGAGCTCTGGTTTGAAATCAGTTTCCTTTTCCATTACTGGAAAGCGCTTTCCATCCATCAGTTCTCGACCTGGGCGCTTCCAAGTTTCTTGTGCGGCCAAACCGGAGACTATCACCAAGGTGTGTGGCATAGTGAAGAAGCAGCTGGCCTTAGCTGAAGACATCGATGTGTCTGCTGGCTCAAAATTTACAGAACTTGGCGCCGATTCTCTTGACACAGTTGAGATTGTGATGGGACTTGAGGAGGCGTTTGGCATCACCGTGGAGGAAGAAAACGCCCAGACCATCGCCACTGTTCAAGATGCAGCTGACCTGATCGAGGATCTCGTTGCGAAGAAGAGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

139

Amino Acids

14.37

Weight (kDa)

5.19

Isoelectric Point (pI)

44.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	63 - 129	2.4e-10	Phosphopantetheine attachment site
PP-binding_2	PF14573	64 - 130	1.9e-06	Acyl-carrier

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 269
AccBSI	CCGCTC	1 cut(s)	53
AciI	CCGC	2 cut(s)	51, 164
AclWI	GGATC	1 cut(s)	399
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	246
AcyI	GRCGYC	1 cut(s)	270
AfeI	AGCGCT	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	69, 388
AgsI	TTSAA	3 cut(s)	46, 85, 368
AjnI	CCWGG	1 cut(s)	139
AleI	CACNNNNGTG	1 cut(s)	188
AluBI	AGCT	5 cut(s)	20, 75, 214, 224, 377
AluI	AGCT	5 cut(s)	20, 75, 214, 224, 377
Alw21I	GWGCWC	1 cut(s)	77
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	399
Ama87I	CYCGRG	1 cut(s)	15
Aor51HI	AGCGCT	1 cut(s)	116
AoxI	GGCC	2 cut(s)	165, 216
ApeKI	GCWGC	3 cut(s)	66, 211, 374
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	117, 147, 272
AsuHPI	GGTGA	2 cut(s)	175, 319
AvaI	CYCGRG	1 cut(s)	15
BanI	GGYRCC	2 cut(s)	58, 269
BanII	GRGCYC	1 cut(s)	77
BbsI	GAAGAC	1 cut(s)	234
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	78, 223, 386
BccI	CCATC	4 cut(s)	130, 134, 295, 362
BcgI	CGANNNNNNTGC	2 cut(s)	224, 258
BciT130I	CCWGG	1 cut(s)	141
BcoDI	GTCTC	1 cut(s)	170
BfoI	RGCGCY	3 cut(s)	118, 148, 273
BisI	GCNGC	4 cut(s)	67, 165, 212, 375
BlsI	GCNGC	4 cut(s)	68, 166, 213, 376
Bme1390I	CCNGG	1 cut(s)	141
BmeT110I	CYCGRG	1 cut(s)	15
BmiI	GGNNCC	2 cut(s)	60, 271
BmrFI	CCNGG	1 cut(s)	141
BmsI	GCATC	2 cut(s)	333, 361
BpiI	GAAGAC	1 cut(s)	234
Bpu10I	CCTNAGC	1 cut(s)	220
BpuEI	CTTGAG	1 cut(s)	329
Bsa29I	ATCGAT	1 cut(s)	234
BsaHI	GRCGYC	1 cut(s)	270
BsaJI	CCNNGG	3 cut(s)	140, 186, 330
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	2 cut(s)	64, 94
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 388
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	141
BseCI	ATCGAT	1 cut(s)	234
BseDI	CCNNGG	3 cut(s)	140, 186, 330
BseGI	GGATG	1 cut(s)	122
BseLI	CCNNNNNNNGG	2 cut(s)	69, 388
BseNI	ACTGG	1 cut(s)	112
BseRI	GAGGAG	1 cut(s)	326
BseXI	GCAGC	3 cut(s)	78, 223, 386
BseYI	CCCAGC	1 cut(s)	62
BshFI	GGCC	2 cut(s)	167, 218
BshNI	GGYRCC	2 cut(s)	58, 269
BshVI	ATCGAT	1 cut(s)	234
BsiHKAI	GWGCWC	1 cut(s)	77
BsiHKCI	CYCGRG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	318
BslI	CCNNNNNNNGG	2 cut(s)	69, 388
BsmAI	GTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	318
BsnI	GGCC	2 cut(s)	167, 218
BsoBI	CYCGRG	1 cut(s)	15
Bsp1286I	GDGCHC	1 cut(s)	77
Bsp143I	GATC	2 cut(s)	384, 391
BspACI	CCGC	2 cut(s)	51, 164
BspANI	GGCC	2 cut(s)	167, 218
BspDI	ATCGAT	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	60, 271
BspPI	GGATC	1 cut(s)	399
BspT107I	GGYRCC	2 cut(s)	58, 269
BsrBI	CCGCTC	1 cut(s)	53
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	3 cut(s)	140, 186, 330
BssMI	GATC	2 cut(s)	384, 391
BssNI	GRCGYC	1 cut(s)	270
BssT1I	CCWWGG	1 cut(s)	186
Bst2UI	CCWGG	1 cut(s)	141
Bst4CI	ACNGT	3 cut(s)	289, 331, 364
Bst6I	CTCTTC	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	270
BstC8I	GCNNGC	3 cut(s)	51, 216, 247
BstDEI	CTNAG	1 cut(s)	220
BstDSI	CCRYGG	1 cut(s)	330
BstENI	CCTNNNNNAGG	1 cut(s)	386
BstF5I	GGATG	1 cut(s)	122
BstH2I	RGCGCY	3 cut(s)	118, 148, 273
BstHHI	GCGC	3 cut(s)	117, 147, 272
BstKTI	GATC	2 cut(s)	387, 394
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	2 cut(s)	384, 391
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 26, 72
BstNI	CCWGG	1 cut(s)	141
BstSCI	CCNGG	1 cut(s)	139
BstV1I	GCAGC	3 cut(s)	78, 223, 386
BstV2I	GAAGAC	1 cut(s)	234
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	167, 218
BsuTUI	ATCGAT	1 cut(s)	234
BtgI	CCRYGG	1 cut(s)	330
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	122
BtsIMutI	CAGTG	1 cut(s)	360
Cac8I	GCNNGC	3 cut(s)	51, 216, 247
CfoI	GCGC	3 cut(s)	117, 147, 272
ClaI	ATCGAT	1 cut(s)	234
CspCI	CAANNNNNGTGG	2 cut(s)	175, 210
DdeI	CTNAG	1 cut(s)	220
DinI	GGCGCC	1 cut(s)	271
DpnI	GATC	2 cut(s)	386, 393
DpnII	GATC	2 cut(s)	384, 391
EaeI	YGGCCR	1 cut(s)	165
Eam1104I	CTCTTC	1 cut(s)	401
EarI	CTCTTC	1 cut(s)	401
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	186
Eco24I	GRGCYC	1 cut(s)	77
Eco47III	AGCGCT	1 cut(s)	116
Eco53kI	GAGCTC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	15
EcoICRI	GAGCTC	1 cut(s)	75
EcoNI	CCTNNNNNAGG	1 cut(s)	386
EcoRII	CCWGG	1 cut(s)	139
EcoT14I	CCWWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	77
EgeI	GGCGCC	1 cut(s)	271
EheI	GGCGCC	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	186
FaiI	YATR	1 cut(s)	200
FaqI	GGGAC	1 cut(s)	318
FauI	CCCGC	1 cut(s)	58
Fnu4HI	GCNGC	4 cut(s)	67, 165, 212, 375
FokI	GGATG	1 cut(s)	109
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	4 cut(s)	67, 165, 212, 375
GlaI	GCGC	3 cut(s)	116, 146, 271
GluI	GCNGC	4 cut(s)	67, 165, 212, 375
GsaI	CCCAGC	1 cut(s)	66
HaeII	RGCGCY	3 cut(s)	118, 148, 273
HaeIII	GGCC	2 cut(s)	167, 218
HapII	CCGG	1 cut(s)	173
HhaI	GCGC	3 cut(s)	117, 147, 272
Hin1I	GRCGYC	1 cut(s)	270
Hin6I	GCGC	3 cut(s)	115, 145, 270
HinP1I	GCGC	3 cut(s)	115, 145, 270
HinfI	GANTC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	2 cut(s)	175, 319
Hpy188III	TCNNGA	3 cut(s)	135, 281, 368
HpyAV	CCTTC	1 cut(s)	52
HpyCH4III	ACNGT	3 cut(s)	289, 331, 364
HpyCH4V	TGCA	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 26, 72
HpyF3I	CTNAG	1 cut(s)	220
Hsp92I	GRCGYC	1 cut(s)	270
HspAI	GCGC	3 cut(s)	115, 145, 270
KasI	GGCGCC	1 cut(s)	269
Kzo9I	GATC	2 cut(s)	384, 391
LmnI	GCTCC	1 cut(s)	72
Lsp1109I	GCAGC	3 cut(s)	78, 223, 386
LweI	GCATC	2 cut(s)	333, 361
MalI	GATC	2 cut(s)	386, 393
MbiI	CCGCTC	1 cut(s)	53
MboI	GATC	2 cut(s)	384, 391
MboII	GAAGA	4 cut(s)	217, 239, 350, 415
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	254
Mly113I	GGCGCC	1 cut(s)	270
MnlI	CCTC	6 cut(s)	20, 49, 304, 307, 328, 382
MseI	TTAA	1 cut(s)	415
MslI	CAYNNNNRTG	3 cut(s)	188, 236, 329
MspA1I	CMGCKG	2 cut(s)	214, 377
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	1 cut(s)	141
MvaI	CCWGG	1 cut(s)	141
MwoI	GCNNNNNNNGC	3 cut(s)	11, 26, 72
NarI	GGCGCC	1 cut(s)	270
NdeII	GATC	2 cut(s)	384, 391
NlaIV	GGNNCC	2 cut(s)	60, 271
OliI	CACNNNNGTG	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	68, 166, 213, 376
PluTI	GGCGCC	1 cut(s)	273
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	139
PspFI	CCCAGC	1 cut(s)	62
PspGI	CCWGG	1 cut(s)	139
PspN4I	GGNNCC	2 cut(s)	60, 271
PsuI	RGATCY	1 cut(s)	391
PvuII	CAGCTG	2 cut(s)	214, 377
RseI	CAYNNNNRTG	3 cut(s)	188, 236, 329
SacI	GAGCTC	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	4 cut(s)	67, 165, 212, 375
Sau3AI	GATC	2 cut(s)	384, 391
ScrFI	CCNGG	1 cut(s)	141
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	9 cut(s)	22, 41, 77, 142, 192, 216, 226, 379, 384
SfaNI	GCATC	2 cut(s)	333, 361
SfoI	GGCGCC	1 cut(s)	271
SmiMI	CAYNNNNRTG	3 cut(s)	188, 236, 329
SmlI	CTYRAG	1 cut(s)	308
SmoI	CTYRAG	1 cut(s)	308
Sse9I	AATT	1 cut(s)	254
SsiI	CCGC	2 cut(s)	51, 164
SspDI	GGCGCC	1 cut(s)	269
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	139
StyI	CCWWGG	1 cut(s)	186
TaaI	ACNGT	3 cut(s)	289, 331, 364
TaqI	TCGA	3 cut(s)	136, 234, 387
TasI	AATT	1 cut(s)	254
TauI	GCSGC	1 cut(s)	167
TfiI	GAWTC	1 cut(s)	275
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TscAI	CASTG	1 cut(s)	367
TseI	GCWGC	3 cut(s)	66, 211, 374
TspRI	CASTG	1 cut(s)	367
XagI	CCTNNNNNAGG	1 cut(s)	386
XapI	RAATTY	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.