Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

20842175 .. 20843731

Gene Structure 1557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGCCGCCGTCACCGGAGCTTCTTCGATCTCCCTCATCCGCTCCTCCCCCCAGCAGTTCCACCAAAATCTCGCATTATCCAGGGCTAACGGTTTGAGATCAGTTTCACTTGCTGGCTATGGAAGAAGTTCCCTCTCTTTCGGGCTGCAACAACGTTCGGCCCGGCTTCGCGTTTCCTGCGCTGCAAAGCCGGATACGGTGGAAAAGGTGTCTAAGATAGTAAAGAAGCAACTTGCATTGCCAGATGACTCTGCAGTTACCGGCGAGTCAAAGTTTTCCGAACTTGGAGCTGATTCTCTAGATACGGTTGAGATTGTGATGGGACTTGAGGAGGAATTCGGCATCAGTGTGGAAGAGGAAAGCGCTCAGACCATTGCAACTGTGCAGGATGCCGCAGATGTTATTGAGAAGCTCATTGAGAAAAATAAGGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

145

Amino Acids

15.28

Weight (kDa)

5.23

Isoelectric Point (pI)

56.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	42
AccII	CGCG	1 cut(s)	171
AciI	CCGC	3 cut(s)	6, 40, 393
AclI	AACGTT	1 cut(s)	154
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	335
AfeI	AGCGCT	1 cut(s)	364
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	3 cut(s)	20, 290, 412
AluI	AGCT	3 cut(s)	20, 290, 412
Aor51HI	AGCGCT	1 cut(s)	364
AoxI	GGCC	2 cut(s)	3, 159
ApeKI	GCWGC	2 cut(s)	145, 182
ApoI	RAATTY	1 cut(s)	335
Asp700I	GAANNNNTTC	1 cut(s)	127
AspLEI	GCGC	2 cut(s)	182, 365
AspS9I	GGNCC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	1 cut(s)	4
BbvI	GCAGC	2 cut(s)	132, 169
BccI	CCATC	1 cut(s)	313
BciT130I	CCWGG	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	163
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	252
BfoI	RGCGCY	1 cut(s)	366
BfuI	GTATCC	1 cut(s)	187
BisI	GCNGC	4 cut(s)	6, 146, 183, 393
BlsI	GCNGC	4 cut(s)	7, 147, 184, 394
Bme1390I	CCNGG	2 cut(s)	82, 163
BmgT120I	GGNCC	1 cut(s)	160
BmrFI	CCNGG	2 cut(s)	82, 163
BmsI	GCATC	2 cut(s)	351, 379
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	1 cut(s)	163
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	14
Bse118I	RCCGGY	1 cut(s)	260
Bse3DI	GCAATG	2 cut(s)	236, 372
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	36, 394
BseMI	GCAATG	2 cut(s)	236, 372
BseMII	CTCAG	1 cut(s)	380
BseRI	GAGGAG	2 cut(s)	34, 344
BseXI	GCAGC	2 cut(s)	132, 169
BseYI	CCCAGC	1 cut(s)	51
BsgI	GTGCAG	1 cut(s)	404
Bsh1236I	CGCG	1 cut(s)	171
BshFI	GGCC	2 cut(s)	5, 161
BsiSI	CCGG	4 cut(s)	15, 163, 191, 261
BslFI	GGGAC	1 cut(s)	336
BsmFI	GGGAC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	5, 161
Bsp143I	GATC	2 cut(s)	27, 98
BspACI	CCGC	3 cut(s)	6, 40, 393
BspANI	GGCC	2 cut(s)	5, 161
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	1 cut(s)	171
BspMAI	CTGCAG	1 cut(s)	256
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	2 cut(s)	236, 372
BsrFI	RCCGGY	1 cut(s)	260
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	2 cut(s)	27, 98
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	4 cut(s)	92, 199, 307, 382
Bst6I	CTCTTC	1 cut(s)	348
BstC8I	GCNNGC	1 cut(s)	115
BstDEI	CTNAG	2 cut(s)	213, 366
BstF5I	GGATG	2 cut(s)	36, 394
BstFNI	CGCG	1 cut(s)	171
BstH2I	RGCGCY	1 cut(s)	366
BstHHI	GCGC	2 cut(s)	182, 365
BstKTI	GATC	2 cut(s)	30, 101
BstMBI	GATC	2 cut(s)	27, 98
BstMWI	GCNNNNNNNGC	1 cut(s)	177
BstNI	CCWGG	1 cut(s)	82
BstSCI	CCNGG	2 cut(s)	80, 161
BstSFI	CTRYAG	1 cut(s)	252
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	2 cut(s)	132, 169
BsuI	GTATCC	1 cut(s)	187
BsuRI	GGCC	2 cut(s)	5, 161
BtsCI	GGATG	2 cut(s)	36, 394
BtsIMutI	CAGTG	1 cut(s)	352
Cac8I	GCNNGC	1 cut(s)	115
CfoI	GCGC	2 cut(s)	182, 365
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	1 cut(s)	160
DdeI	CTNAG	2 cut(s)	213, 366
DpnI	GATC	2 cut(s)	29, 100
DpnII	GATC	2 cut(s)	27, 98
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	348
EarI	CTCTTC	1 cut(s)	348
Eco47III	AGCGCT	1 cut(s)	364
EcoRI	GAATTC	1 cut(s)	335
EcoRII	CCWGG	1 cut(s)	80
FaiI	YATR	1 cut(s)	120
FaqI	GGGAC	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	6, 146, 183, 393
FokI	GGATG	2 cut(s)	23, 401
Fsp4HI	GCNGC	4 cut(s)	6, 146, 183, 393
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	2 cut(s)	181, 364
GluI	GCNGC	4 cut(s)	6, 146, 183, 393
GsaI	CCCAGC	1 cut(s)	55
HaeII	RGCGCY	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	5, 161
HapII	CCGG	4 cut(s)	15, 163, 191, 261
HhaI	GCGC	2 cut(s)	182, 365
Hin6I	GCGC	2 cut(s)	180, 363
HinP1I	GCGC	2 cut(s)	180, 363
HinfI	GANTC	3 cut(s)	248, 266, 293
HpaII	CCGG	4 cut(s)	15, 163, 191, 261
HphI	GGTGA	1 cut(s)	4
Hpy188I	TCNGA	2 cut(s)	280, 369
Hpy188III	TCNNGA	1 cut(s)	299
HpyCH4III	ACNGT	4 cut(s)	92, 199, 307, 382
HpyCH4IV	ACGT	1 cut(s)	154
HpyCH4V	TGCA	6 cut(s)	148, 185, 236, 254, 377, 385
HpyF10VI	GCNNNNNNNGC	1 cut(s)	177
HpyF3I	CTNAG	2 cut(s)	213, 366
HpySE526I	ACGT	1 cut(s)	154
HspAI	GCGC	2 cut(s)	180, 363
Kzo9I	GATC	2 cut(s)	27, 98
LmnI	GCTCC	3 cut(s)	17, 47, 287
Lsp1109I	GCAGC	2 cut(s)	132, 169
LweI	GCATC	2 cut(s)	351, 379
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	154
MaeIII	GTNAC	2 cut(s)	10, 256
MalI	GATC	2 cut(s)	29, 100
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	2 cut(s)	27, 98
MboII	GAAGA	3 cut(s)	15, 135, 365
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	242, 275
MnlI	CCTC	6 cut(s)	44, 55, 143, 322, 325, 349
MroXI	GAANNNNTTC	1 cut(s)	127
MslI	CAYNNNNRTG	1 cut(s)	347
MspI	CCGG	4 cut(s)	15, 163, 191, 261
MspR9I	CCNGG	2 cut(s)	82, 163
MvaI	CCWGG	1 cut(s)	82
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	1 cut(s)	177
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	2 cut(s)	27, 98
NmuCI	GTSAC	1 cut(s)	10
PdmI	GAANNNNTTC	1 cut(s)	127
PfeI	GAWTC	1 cut(s)	293
PkrI	GCNGC	4 cut(s)	7, 147, 184, 394
PleI	GAGTC	2 cut(s)	242, 274
PpsI	GAGTC	2 cut(s)	242, 274
Psp1406I	AACGTT	1 cut(s)	154
Psp6I	CCWGG	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	51
PspGI	CCWGG	1 cut(s)	80
PspPI	GGNCC	1 cut(s)	160
PstI	CTGCAG	1 cut(s)	256
RseI	CAYNNNNRTG	1 cut(s)	347
SatI	GCNGC	4 cut(s)	6, 146, 183, 393
Sau3AI	GATC	2 cut(s)	27, 98
Sau96I	GGNCC	1 cut(s)	160
SchI	GAGTC	2 cut(s)	242, 275
ScrFI	CCNGG	2 cut(s)	82, 163
SetI	ASST	5 cut(s)	22, 157, 210, 292, 414
SfaNI	GCATC	2 cut(s)	351, 379
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	326
SmoI	CTYRAG	1 cut(s)	326
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	3 cut(s)	6, 40, 393
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	2 cut(s)	80, 161
TaaI	ACNGT	4 cut(s)	92, 199, 307, 382
TaiI	ACGT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	335
TauI	GCSGC	2 cut(s)	8, 395
TfiI	GAWTC	1 cut(s)	293
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	10
TseI	GCWGC	2 cut(s)	145, 182
Tsp45I	GTSAC	1 cut(s)	10
TspRI	CASTG	1 cut(s)	352
XapI	RAATTY	1 cut(s)	335
XbaI	TCTAGA	1 cut(s)	298
XmnI	GAANNNNTTC	1 cut(s)	127
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.