Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

3215067 .. 3217554

Gene Structure 2488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG048400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGGCCGCCATCACAGGAGCTTCTTCAATCTCACTCCGCTCTCGCCTTCATCAAAATCTTGCATTATCCAGGGCTAATGGTCTCAAGCCAGTTTCACTGTCTGGTTATGGAAGAAGTTCTCTTTCTTTCGGGTTACAGCAGCGTTCAGCACGGCTTCGGATTTCCTGTGCAGCCAAGCCAGAGACAGTGGACAAGGTGTGCCAGATAGTTAGGAAGCAACTTGCATTACCAGATGACTCTGCAGTTTCTGGAGAGTCGAAATTTTCAGCACTTGGAGCTGATTCCCTTGATACGGTTGAGATCGTGATGGGACTCGAGGAGGAATTTGGTATTAGTGTGGAAGAGGAGAGTGCTCAGAGCATTGCAACTGTTCAGGATGCTGCGGATCTTATCGAGAAGCTCATCGAGAAGAACAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

140

Amino Acids

14.85

Weight (kDa)

5.46

Isoelectric Point (pI)

54.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	64 - 131	6.5e-11	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	39
AciI	CCGC	3 cut(s)	6, 37, 383
AclWI	GGATC	1 cut(s)	393
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	260, 323
AfiI	CCNNNNNNNGG	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	27
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	3 cut(s)	20, 278, 400
AluI	AGCT	3 cut(s)	20, 278, 400
Alw21I	GWGCWC	1 cut(s)	355
Alw26I	GTCTC	2 cut(s)	86, 176
AlwI	GGATC	1 cut(s)	393
AlwNI	CAGNNNCTG	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	314
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	3 cut(s)	139, 170, 380
ApoI	RAATTY	2 cut(s)	260, 323
Asp700I	GAANNNNTTC	1 cut(s)	115
AvaI	CYCGRG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	151, 182, 367
BccI	CCATC	2 cut(s)	17, 301
BceAI	ACGGC	1 cut(s)	167
BciT130I	CCWGG	1 cut(s)	70
BcoDI	GTCTC	2 cut(s)	86, 176
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	4 cut(s)	6, 140, 171, 381
BlsI	GCNGC	4 cut(s)	7, 141, 172, 382
Bme1390I	CCNGG	1 cut(s)	70
BmeT110I	CYCGRG	1 cut(s)	314
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	1 cut(s)	367
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse1I	ACTGG	1 cut(s)	89
Bse3DI	GCAATG	1 cut(s)	360
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	382
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	1 cut(s)	368
BseNI	ACTGG	1 cut(s)	89
BseRI	GAGGAG	2 cut(s)	332, 359
BseXI	GCAGC	3 cut(s)	151, 182, 367
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	5
BsiHKAI	GWGCWC	1 cut(s)	355
BsiHKCI	CYCGRG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	324
BslI	CCNNNNNNNGG	1 cut(s)	292
BsmAI	GTCTC	2 cut(s)	86, 176
BsmFI	GGGAC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	355
Bsp143I	GATC	2 cut(s)	300, 385
BspACI	CCGC	3 cut(s)	6, 37, 383
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	1 cut(s)	367
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	1 cut(s)	393
BspTNI	GGTCTC	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	2 cut(s)	300, 385
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	4 cut(s)	99, 187, 295, 370
Bst6I	CTCTTC	1 cut(s)	336
BstDEI	CTNAG	2 cut(s)	354, 420
BstF5I	GGATG	1 cut(s)	382
BstKTI	GATC	2 cut(s)	303, 388
BstMAI	GTCTC	2 cut(s)	86, 176
BstMBI	GATC	2 cut(s)	300, 385
BstMWI	GCNNNNNNNGC	1 cut(s)	275
BstNI	CCWGG	1 cut(s)	70
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	240
BstV1I	GCAGC	3 cut(s)	151, 182, 367
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	1 cut(s)	382
BtsIMutI	CAGTG	2 cut(s)	95, 192
CaiI	CAGNNNCTG	1 cut(s)	248
DdeI	CTNAG	2 cut(s)	354, 420
DpnI	GATC	2 cut(s)	302, 387
DpnII	GATC	2 cut(s)	300, 385
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	336
EarI	CTCTTC	1 cut(s)	336
Eco31I	GGTCTC	1 cut(s)	86
Eco88I	CYCGRG	1 cut(s)	314
EcoRII	CCWGG	1 cut(s)	68
FaiI	YATR	1 cut(s)	108
FaqI	GGGAC	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	6, 140, 171, 381
FokI	GGATG	1 cut(s)	389
Fsp4HI	GCNGC	4 cut(s)	6, 140, 171, 381
GluI	GCNGC	4 cut(s)	6, 140, 171, 381
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	5
HinfI	GANTC	4 cut(s)	236, 254, 281, 312
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	159, 357
Hpy188III	TCNNGA	5 cut(s)	249, 304, 374, 394, 406
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	56
HpyCH4III	ACNGT	4 cut(s)	99, 187, 295, 370
HpyCH4V	TGCA	5 cut(s)	62, 170, 224, 242, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	275
HpyF3I	CTNAG	2 cut(s)	354, 420
Kzo9I	GATC	2 cut(s)	300, 385
LmnI	GCTCC	2 cut(s)	17, 275
Lsp1109I	GCAGC	3 cut(s)	151, 182, 367
LweI	GCATC	1 cut(s)	367
MaeIII	GTNAC	1 cut(s)	132
MalI	GATC	2 cut(s)	302, 387
MbiI	CCGCTC	1 cut(s)	39
MboI	GATC	2 cut(s)	300, 385
MboII	GAAGA	4 cut(s)	15, 123, 353, 421
MflI	RGATCY	1 cut(s)	385
MhlI	GDGCHC	1 cut(s)	355
MluCI	AATT	2 cut(s)	260, 323
MlyI	GAGTC	3 cut(s)	230, 263, 306
MnlI	CCTC	3 cut(s)	310, 313, 337
MroXI	GAANNNNTTC	1 cut(s)	115
MspR9I	CCNGG	1 cut(s)	70
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	1 cut(s)	275
NdeII	GATC	2 cut(s)	300, 385
PaeR7I	CTCGAG	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	281
PkrI	GCNGC	4 cut(s)	7, 141, 172, 382
PleI	GAGTC	3 cut(s)	230, 262, 306
PpsI	GAGTC	3 cut(s)	230, 262, 306
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspXI	VCTCGAGB	1 cut(s)	314
PstI	CTGCAG	1 cut(s)	244
PstNI	CAGNNNCTG	1 cut(s)	248
PsuI	RGATCY	1 cut(s)	385
SatI	GCNGC	4 cut(s)	6, 140, 171, 381
Sau3AI	GATC	2 cut(s)	300, 385
SchI	GAGTC	3 cut(s)	230, 263, 306
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	1 cut(s)	355
SetI	ASST	4 cut(s)	22, 198, 280, 402
SfaNI	GCATC	1 cut(s)	367
SfcI	CTRYAG	1 cut(s)	240
Sfr274I	CTCGAG	1 cut(s)	314
SlaI	CTCGAG	1 cut(s)	314
SmlI	CTYRAG	2 cut(s)	83, 314
SmoI	CTYRAG	2 cut(s)	83, 314
Sse9I	AATT	2 cut(s)	260, 323
SsiI	CCGC	3 cut(s)	6, 37, 383
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	4 cut(s)	99, 187, 295, 370
TaqI	TCGA	4 cut(s)	257, 315, 393, 405
TasI	AATT	2 cut(s)	260, 323
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	281
TscAI	CASTG	2 cut(s)	102, 192
TseI	GCWGC	3 cut(s)	139, 170, 380
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	2 cut(s)	102, 192
XapI	RAATTY	2 cut(s)	260, 323
XhoI	CTCGAG	1 cut(s)	314
XmnI	GAANNNNTTC	1 cut(s)	115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.