Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

9571185 .. 9572213

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGCGACAAGTTTCTGCTCCTCCATCTCCATGCAAGCTCCTTTCTCGGCTACAACAACAAGGTTCTGTCTCAACAAACAGGCTACGATTTTCAACAATGAAAAGACTAATAATCTCTCCTTCAGCCTACGACGTTTGATGCCTGCTCGTCTCGCAGTTTCTTGTGCAGTCAAGCAAGAGACAGTAGAGAAAGTGTCTGAGATTGTCAAGAAGCAATTGTCGCTCACCGATGATCAAAAAGTCACTGCCGGAACTAAATTTACCGAGCTTGGAGCTGATTCTCTCGACACGGTTGAGATAGTGATGGGTTTGGAGGAAGAGTTCGGGATAACAATGGCGGAAGAGAGAGCAAAGGAGATTGCAACAGTCCAACAGGCTGCTGAACTCATTGAAGAACTCGTCCAAGAGAAGACTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

139

Amino Acids

15.3

Weight (kDa)

4.87

Isoelectric Point (pI)

52.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	63 - 130	1.2e-10	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	338
AcsI	RAATTY	1 cut(s)	257
AcuI	CTGAAG	1 cut(s)	106
AgsI	TTSAA	2 cut(s)	94, 392
AloI	GAACNNNNNNTCC	2 cut(s)	305, 337
AluBI	AGCT	3 cut(s)	38, 268, 275
AluI	AGCT	3 cut(s)	38, 268, 275
Alw26I	GTCTC	3 cut(s)	74, 155, 173
ApeKI	GCWGC	1 cut(s)	377
ApoI	RAATTY	1 cut(s)	257
AsuHPI	GGTGA	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	416
BbvI	GCAGC	1 cut(s)	364
BccI	CCATC	2 cut(s)	32, 298
BclI	TGATCA	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	74, 155, 173
BisI	GCNGC	1 cut(s)	378
BlsI	GCNGC	1 cut(s)	379
BmsI	GCATC	1 cut(s)	129
BpiI	GAAGAC	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	305, 335
BseMII	CTCAG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	10
BseXI	GCAGC	1 cut(s)	364
BsgI	GTGCAG	1 cut(s)	186
BsiSI	CCGG	1 cut(s)	249
BsmAI	GTCTC	3 cut(s)	74, 155, 173
BsmBI	CGTCTC	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	232
BspACI	CCGC	1 cut(s)	338
BspCNI	CTCAG	1 cut(s)	190
BssMI	GATC	1 cut(s)	232
Bst4CI	ACNGT	3 cut(s)	184, 292, 367
Bst6I	CTCTTC	2 cut(s)	312, 336
BstC8I	GCNNGC	2 cut(s)	36, 144
BstDEI	CTNAG	2 cut(s)	198, 417
BstKTI	GATC	1 cut(s)	235
BstMAI	GTCTC	3 cut(s)	74, 155, 173
BstMBI	GATC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 220
BstV1I	GCAGC	1 cut(s)	364
BstV2I	GAAGAC	1 cut(s)	416
BtsI	GCAGTG	1 cut(s)	243
BtsIMutI	CAGTG	1 cut(s)	243
Cac8I	GCNNGC	2 cut(s)	36, 144
CviAII	CATG	1 cut(s)	31
CviJI	RGCY	7 cut(s)	38, 50, 83, 126, 268, 275, 377
CviKI_1	RGCY	7 cut(s)	38, 50, 83, 126, 268, 275, 377
DdeI	CTNAG	2 cut(s)	198, 417
DpnI	GATC	1 cut(s)	234
DpnII	GATC	1 cut(s)	232
Eam1104I	CTCTTC	2 cut(s)	312, 336
EarI	CTCTTC	2 cut(s)	312, 336
EciI	GGCGGA	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	106
Esp3I	CGTCTC	1 cut(s)	155
FaeI	CATG	1 cut(s)	34
FaiI	YATR	1 cut(s)	32
FatI	CATG	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	378
Fsp4HI	GCNGC	1 cut(s)	378
GluI	GCNGC	1 cut(s)	378
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	1 cut(s)	34
HinfI	GANTC	1 cut(s)	278
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	217
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	3 cut(s)	208, 284, 325
Hpy99I	CGWCG	1 cut(s)	135
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	3 cut(s)	184, 292, 367
HpyCH4IV	ACGT	1 cut(s)	133
HpyCH4V	TGCA	3 cut(s)	34, 167, 362
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 220
HpyF3I	CTNAG	2 cut(s)	198, 417
HpySE526I	ACGT	1 cut(s)	133
Hsp92II	CATG	1 cut(s)	34
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	1 cut(s)	232
LmnI	GCTCC	3 cut(s)	23, 43, 272
LpnPI	CCDG	4 cut(s)	65, 156, 262, 359
Lsp1109I	GCAGC	1 cut(s)	364
LweI	GCATC	1 cut(s)	129
MaeII	ACGT	1 cut(s)	133
MaeIII	GTNAC	1 cut(s)	241
MalI	GATC	1 cut(s)	234
MboI	GATC	1 cut(s)	232
MboII	GAAGA	3 cut(s)	329, 353, 404
MfeI	CAATTG	1 cut(s)	215
MluCI	AATT	2 cut(s)	215, 257
MmeI	TCCRAC	1 cut(s)	394
MnlI	CCTC	2 cut(s)	31, 307
MslI	CAYNNNNRTG	1 cut(s)	29
MspI	CCGG	1 cut(s)	249
MunI	CAATTG	1 cut(s)	215
MwoI	GCNNNNNNNGC	2 cut(s)	152, 220
NdeII	GATC	1 cut(s)	232
NlaIII	CATG	1 cut(s)	34
NmeAIII	GCCGAG	1 cut(s)	26
NmuCI	GTSAC	1 cut(s)	241
PfeI	GAWTC	1 cut(s)	278
PkrI	GCNGC	1 cut(s)	379
PsrI	GAACNNNNNNTAC	2 cut(s)	244, 276
RseI	CAYNNNNRTG	1 cut(s)	29
SatI	GCNGC	1 cut(s)	378
Sau3AI	GATC	1 cut(s)	232
SetI	ASST	5 cut(s)	40, 65, 136, 270, 277
SfaNI	GCATC	1 cut(s)	129
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	2 cut(s)	215, 257
SsiI	CCGC	1 cut(s)	338
TaaI	ACNGT	3 cut(s)	184, 292, 367
TaiI	ACGT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	285
TasI	AATT	2 cut(s)	215, 257
TfiI	GAWTC	1 cut(s)	278
TscAI	CASTG	1 cut(s)	250
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	250
XapI	RAATTY	1 cut(s)	257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.