Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

30537502 .. 30538687

Gene Structure 1186 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1230700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTGTTTCTGTGCTAAACCAGAAACAGTGGCGAAGGTGTCTAAGATAGTAAGGAAGCAACTTGCATTGCCAGATGACTCTGCTGTTACCGGCGAGTCAAAGTTTTCTGAACTTGGAGCTGATTCTCTCGATACGGTTGAGATTGTGATGGGACTTGAGGAGGAATTCGGTATTAGTGTAGAAGAGGATAGCGCTCAGGCCATTGCAACTGTGCAGGATGCCGCGGATCTTATTGAGAAGCTCATTGAGAAGAACAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

88

Amino Acids

9.32

Weight (kDa)

4.31

Isoelectric Point (pI)

43.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	12 - 78	4.6e-11	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	224
AciI	CCGC	2 cut(s)	222, 224
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	164
AfeI	AGCGCT	1 cut(s)	193
AluBI	AGCT	2 cut(s)	119, 241
AluI	AGCT	2 cut(s)	119, 241
AlwI	GGATC	1 cut(s)	234
Aor51HI	AGCGCT	1 cut(s)	193
AoxI	GGCC	1 cut(s)	198
ApoI	RAATTY	1 cut(s)	164
AspLEI	GCGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	142
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
BmsI	GCATC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	195
BpuEI	CTTGAG	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	222
Bse118I	RCCGGY	1 cut(s)	89
Bse3DI	GCAATG	2 cut(s)	65, 201
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	1 cut(s)	223
BseMI	GCAATG	2 cut(s)	65, 201
BseMII	CTCAG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	173
BsgI	GTGCAG	1 cut(s)	233
Bsh1236I	CGCG	1 cut(s)	224
BshFI	GGCC	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	165
BsmFI	GGGAC	1 cut(s)	165
BsnI	GGCC	1 cut(s)	200
Bsp143I	GATC	1 cut(s)	226
BspACI	CCGC	2 cut(s)	222, 224
BspANI	GGCC	1 cut(s)	200
BspCNI	CTCAG	1 cut(s)	208
BspFNI	CGCG	1 cut(s)	224
BspPI	GGATC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	65, 201
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	1 cut(s)	226
Bst4CI	ACNGT	3 cut(s)	28, 136, 211
Bst6I	CTCTTC	1 cut(s)	177
BstDEI	CTNAG	3 cut(s)	42, 195, 261
BstDSI	CCRYGG	1 cut(s)	222
BstF5I	GGATG	1 cut(s)	223
BstFNI	CGCG	1 cut(s)	224
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	1 cut(s)	229
BstMBI	GATC	1 cut(s)	226
BstUI	CGCG	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	200
BtgI	CCRYGG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	223
BtsIMutI	CAGTG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	89
Cfr42I	CCGCGG	1 cut(s)	225
CviJI	RGCY	4 cut(s)	119, 200, 241, 260
CviKI_1	RGCY	4 cut(s)	119, 200, 241, 260
DdeI	CTNAG	3 cut(s)	42, 195, 261
DpnI	GATC	1 cut(s)	228
DpnII	GATC	1 cut(s)	226
Eam1104I	CTCTTC	1 cut(s)	177
EarI	CTCTTC	1 cut(s)	177
Eco47III	AGCGCT	1 cut(s)	193
EcoRI	GAATTC	1 cut(s)	164
FaqI	GGGAC	1 cut(s)	165
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	230
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	1 cut(s)	222
HaeII	RGCGCY	1 cut(s)	195
HaeIII	GGCC	1 cut(s)	200
HapII	CCGG	1 cut(s)	90
HhaI	GCGC	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HinfI	GANTC	3 cut(s)	77, 95, 122
HpaII	CCGG	1 cut(s)	90
Hpy188I	TCNGA	1 cut(s)	109
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	28
HpyCH4III	ACNGT	3 cut(s)	28, 136, 211
HpyCH4V	TGCA	3 cut(s)	65, 206, 214
HpyF3I	CTNAG	3 cut(s)	42, 195, 261
HspAI	GCGC	1 cut(s)	192
KspI	CCGCGG	1 cut(s)	225
Kzo9I	GATC	1 cut(s)	226
LmnI	GCTCC	1 cut(s)	116
LpnPI	CCDG	5 cut(s)	33, 84, 103, 182, 200
LweI	GCATC	1 cut(s)	208
MaeIII	GTNAC	1 cut(s)	85
MalI	GATC	1 cut(s)	228
MboI	GATC	1 cut(s)	226
MboII	GAAGA	2 cut(s)	194, 262
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	164
MlyI	GAGTC	2 cut(s)	71, 104
MnlI	CCTC	3 cut(s)	151, 154, 178
MspA1I	CMGCKG	1 cut(s)	224
MspI	CCGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	224
NdeII	GATC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	223
PleI	GAGTC	2 cut(s)	71, 103
PpsI	GAGTC	2 cut(s)	71, 103
PsuI	RGATCY	1 cut(s)	226
SacII	CCGCGG	1 cut(s)	225
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	1 cut(s)	226
SchI	GAGTC	2 cut(s)	71, 104
SetI	ASST	3 cut(s)	39, 121, 243
SfaNI	GCATC	1 cut(s)	208
Sfr303I	CCGCGG	1 cut(s)	225
SgrBI	CCGCGG	1 cut(s)	225
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
Sse9I	AATT	1 cut(s)	164
SsiI	CCGC	2 cut(s)	222, 224
TaaI	ACNGT	3 cut(s)	28, 136, 211
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	164
TauI	GCSGC	1 cut(s)	224
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	33
TspRI	CASTG	1 cut(s)	33
XapI	RAATTY	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.