Rh4AG227900

Carrier of the growing fatty acid chain in fatty acid biosynthesis

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0002077
Physical Location & Seq
Reverse (-)
52924738 .. 52926938
2201 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG227900.1

Sequence Viewer

Length: 306 bp
ATGGCTTCTCTTTCTCAATCTTCTACTGCCTTCTCAGCTTCCTTCAAACCCACCCTGGCCAAACCAGAGACTCTTAACAAGGTCTGTGATATAGTGAAGAAGCAGCTGGCTTTGCCTGATGACACAGCTGTGACCGCAGGCTCCAAGTTCACTGAACTTGGAGCTGATTCTCTTGACACAGTTGAGATTGTGATGGGACTTGAGGAGGAGTTTGGTATCAGCGTGGAAGAAGAAAGTGCTCAGACCATCGCCACTGTTCAAGATGCAGCAGATCTGATTGAGAAGCTCGTCGAGAAGAAAGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PP-binding

Protein Analysis

101

Amino Acids

10.69

Weight (kDa)

4.31

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PP-binding PF00550 27 - 93 4.1e-11 Phosphopantetheine attachment site
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 135
AcoI YGGCCR 1 cut(s) 57
AgsI TTSAA 2 cut(s) 46, 260
AjnI CCWGG 1 cut(s) 54
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 6 cut(s) 38, 106, 128, 164, 286, 302
AluI AGCT 6 cut(s) 38, 106, 128, 164, 286, 302
Alw21I GWGCWC 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 62
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 2 cut(s) 103, 266
BalI TGGCCA 1 cut(s) 59
Bbv12I GWGCWC 1 cut(s) 241
BbvI GCAGC 2 cut(s) 115, 278
BccI CCATC 2 cut(s) 187, 254
BciT130I CCWGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 62
BglII AGATCT 1 cut(s) 271
BisI GCNGC 2 cut(s) 104, 267
BlsI GCNGC 2 cut(s) 105, 268
Bme1390I CCNGG 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 142
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 1 cut(s) 253
BpuEI CTTGAG 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 54
BseBI CCWGG 1 cut(s) 56
BseDI CCNNGG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 48, 254
BseRI GAGGAG 2 cut(s) 218, 221
BseXI GCAGC 2 cut(s) 115, 278
BshFI GGCC 1 cut(s) 59
BsiHKAI GWGCWC 1 cut(s) 241
BslFI GGGAC 1 cut(s) 210
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 1 cut(s) 59
Bsp1286I GDGCHC 1 cut(s) 241
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 1 cut(s) 135
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 2 cut(s) 47, 253
BspLI GGNNCC 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 54
BssMI GATC 1 cut(s) 271
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 2 cut(s) 181, 256
BstC8I GCNNGC 2 cut(s) 108, 139
BstDEI CTNAG 2 cut(s) 34, 240
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 3 cut(s) 35, 112, 134
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 2 cut(s) 115, 278
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BsuRI GGCC 1 cut(s) 59
BtgZI GCGATG 1 cut(s) 232
BtsIMutI CAGTG 2 cut(s) 150, 252
Cac8I GCNNGC 2 cut(s) 108, 139
DdeI CTNAG 2 cut(s) 34, 240
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 1 cut(s) 57
EcoRII CCWGG 1 cut(s) 54
FaiI YATR 1 cut(s) 92
FaqI GGGAC 1 cut(s) 210
Fnu4HI GCNGC 2 cut(s) 104, 267
Fsp4HI GCNGC 2 cut(s) 104, 267
GluI GCNGC 2 cut(s) 104, 267
HaeIII GGCC 1 cut(s) 59
HindIII AAGCTT 1 cut(s) 300
HinfI GANTC 2 cut(s) 70, 167
Hpy166II GTNNAC 1 cut(s) 150
Hpy188I TCNGA 2 cut(s) 243, 276
Hpy188III TCNNGA 3 cut(s) 173, 260, 292
Hpy8I GTNNAC 1 cut(s) 150
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 2 cut(s) 40, 52
HpyCH4III ACNGT 2 cut(s) 181, 256
HpyCH4V TGCA 1 cut(s) 266
HpyF10VI GCNNNNNNNGC 3 cut(s) 35, 112, 134
HpyF3I CTNAG 2 cut(s) 34, 240
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 146, 161
LpnPI CCDG 6 cut(s) 41, 68, 78, 92, 123, 129
Lsp1109I GCAGC 2 cut(s) 115, 278
LweI GCATC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 4 cut(s) 12, 109, 239, 242
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 1 cut(s) 241
MlsI TGGCCA 1 cut(s) 59
MluNI TGGCCA 1 cut(s) 59
MlyI GAGTC 1 cut(s) 64
MnlI CCTC 2 cut(s) 196, 199
Mox20I TGGCCA 1 cut(s) 59
MscI TGGCCA 1 cut(s) 59
MseI TTAA 2 cut(s) 75, 304
MslI CAYNNNNRTG 1 cut(s) 128
Msp20I TGGCCA 1 cut(s) 59
MspA1I CMGCKG 2 cut(s) 106, 128
MspR9I CCNGG 1 cut(s) 56
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 3 cut(s) 35, 112, 134
NdeII GATC 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 142
NmuCI GTSAC 1 cut(s) 130
OliI CACNNNNGTG 1 cut(s) 128
PfeI GAWTC 1 cut(s) 167
PkrI GCNGC 2 cut(s) 105, 268
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 142
PsuI RGATCY 1 cut(s) 271
PvuII CAGCTG 2 cut(s) 106, 128
RseI CAYNNNNRTG 1 cut(s) 128
SaqAI TTAA 2 cut(s) 75, 304
SatI GCNGC 2 cut(s) 104, 267
Sau3AI GATC 1 cut(s) 271
SchI GAGTC 1 cut(s) 64
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 1 cut(s) 241
SetI ASST 7 cut(s) 40, 84, 108, 130, 166, 288, 304
SfaNI GCATC 1 cut(s) 253
SmiMI CAYNNNNRTG 1 cut(s) 128
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 2 cut(s) 181, 256
TaqI TCGA 1 cut(s) 291
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 2 cut(s) 75, 304
Tru9I TTAA 2 cut(s) 75, 304
TscAI CASTG 2 cut(s) 157, 259
TseFI GTSAC 1 cut(s) 130
TseI GCWGC 2 cut(s) 103, 266
Tsp45I GTSAC 1 cut(s) 130
TspRI CASTG 2 cut(s) 157, 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.