Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

30605797 .. 30608746

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1231000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCTTAGATCTTTCGGGTTACAGCAACGCTCCTTGCGGCTTCGCGTTTCCTGCGCTGCCAAACCAGAAACAATGGCGAAGGTGTCTAAGATAGTAAGGAAGCAACTTGCATTGCCAGATGACTCTGCTGTTACTGGCGAGTCAAAGTTTTCTGAACTTGGAGCTGATTCTGTTGAGATTGTGATGGGATTTGAGGAGGAATTCGGTATAAGTGTGGAAGAGGACAGCGCTCAGACCATTGCAACCGTGCAGGATGCGGCGGATCTTATTGAGAAGCTCGTTGAGAAAAATAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

4.85

Isoelectric Point (pI)

61.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	45
AciI	CCGC	3 cut(s)	37, 257, 260
AclWI	GGATC	1 cut(s)	270
AcsI	RAATTY	1 cut(s)	200
AfeI	AGCGCT	1 cut(s)	229
AluBI	AGCT	2 cut(s)	164, 277
AluI	AGCT	2 cut(s)	164, 277
AlwI	GGATC	1 cut(s)	270
Aor51HI	AGCGCT	1 cut(s)	229
ApeKI	GCWGC	1 cut(s)	56
ApoI	RAATTY	1 cut(s)	200
AspLEI	GCGC	2 cut(s)	56, 230
BbvI	GCAGC	1 cut(s)	43
BccI	CCATC	1 cut(s)	178
BfoI	RGCGCY	1 cut(s)	231
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	3 cut(s)	38, 57, 258
BlsI	GCNGC	3 cut(s)	39, 58, 259
BmsI	GCATC	1 cut(s)	244
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	110, 237
BseGI	GGATG	1 cut(s)	259
BseMI	GCAATG	2 cut(s)	110, 237
BseMII	CTCAG	1 cut(s)	245
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	209
BseXI	GCAGC	1 cut(s)	43
BsgI	GTGCAG	1 cut(s)	269
Bsh1236I	CGCG	1 cut(s)	45
Bsp143I	GATC	2 cut(s)	8, 262
BspACI	CCGC	3 cut(s)	37, 257, 260
BspCNI	CTCAG	1 cut(s)	244
BspFNI	CGCG	1 cut(s)	45
BspPI	GGATC	1 cut(s)	270
BsrDI	GCAATG	2 cut(s)	110, 237
BsrI	ACTGG	1 cut(s)	139
BssMI	GATC	2 cut(s)	8, 262
Bst4CI	ACNGT	1 cut(s)	247
Bst6I	CTCTTC	1 cut(s)	213
BstDEI	CTNAG	4 cut(s)	5, 87, 231, 297
BstF5I	GGATG	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	45
BstH2I	RGCGCY	1 cut(s)	231
BstHHI	GCGC	2 cut(s)	56, 230
BstKTI	GATC	2 cut(s)	11, 265
BstMBI	GATC	2 cut(s)	8, 262
BstMWI	GCNNNNNNNGC	1 cut(s)	51
BstUI	CGCG	1 cut(s)	45
BstV1I	GCAGC	1 cut(s)	43
BstX2I	RGATCY	2 cut(s)	8, 262
BstYI	RGATCY	2 cut(s)	8, 262
BtsCI	GGATG	1 cut(s)	259
CfoI	GCGC	2 cut(s)	56, 230
CviJI	RGCY	4 cut(s)	40, 164, 277, 296
CviKI_1	RGCY	4 cut(s)	40, 164, 277, 296
DdeI	CTNAG	4 cut(s)	5, 87, 231, 297
DpnI	GATC	2 cut(s)	10, 264
DpnII	GATC	2 cut(s)	8, 262
Eam1104I	CTCTTC	1 cut(s)	213
EarI	CTCTTC	1 cut(s)	213
EciI	GGCGGA	1 cut(s)	275
Eco47III	AGCGCT	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	200
FaiI	YATR	1 cut(s)	209
Fnu4HI	GCNGC	3 cut(s)	38, 57, 258
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	3 cut(s)	38, 57, 258
GlaI	GCGC	2 cut(s)	55, 229
GluI	GCNGC	3 cut(s)	38, 57, 258
HaeII	RGCGCY	1 cut(s)	231
HhaI	GCGC	2 cut(s)	56, 230
Hin6I	GCGC	2 cut(s)	54, 228
HinP1I	GCGC	2 cut(s)	54, 228
HinfI	GANTC	3 cut(s)	122, 140, 167
Hpy188I	TCNGA	2 cut(s)	154, 234
HpyAV	CCTTC	1 cut(s)	73
HpyCH4III	ACNGT	1 cut(s)	247
HpyCH4V	TGCA	3 cut(s)	110, 242, 250
HpyF10VI	GCNNNNNNNGC	1 cut(s)	51
HpyF3I	CTNAG	4 cut(s)	5, 87, 231, 297
HspAI	GCGC	2 cut(s)	54, 228
Kzo9I	GATC	2 cut(s)	8, 262
LmnI	GCTCC	2 cut(s)	35, 161
LpnPI	CCDG	5 cut(s)	64, 78, 120, 129, 236
Lsp1109I	GCAGC	1 cut(s)	43
LweI	GCATC	1 cut(s)	244
MaeIII	GTNAC	2 cut(s)	18, 130
MalI	GATC	2 cut(s)	10, 264
MboI	GATC	2 cut(s)	8, 262
MboII	GAAGA	1 cut(s)	230
MflI	RGATCY	2 cut(s)	8, 262
MluCI	AATT	1 cut(s)	200
MlyI	GAGTC	2 cut(s)	116, 149
MnlI	CCTC	3 cut(s)	187, 190, 214
MvnI	CGCG	1 cut(s)	45
MwoI	GCNNNNNNNGC	1 cut(s)	51
NdeII	GATC	2 cut(s)	8, 262
PfeI	GAWTC	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	39, 58, 259
PleI	GAGTC	2 cut(s)	116, 148
PpsI	GAGTC	2 cut(s)	116, 148
PsuI	RGATCY	2 cut(s)	8, 262
SatI	GCNGC	3 cut(s)	38, 57, 258
Sau3AI	GATC	2 cut(s)	8, 262
SchI	GAGTC	2 cut(s)	116, 149
SetI	ASST	3 cut(s)	84, 166, 279
SfaNI	GCATC	1 cut(s)	244
Sse9I	AATT	1 cut(s)	200
SsiI	CCGC	3 cut(s)	37, 257, 260
TaaI	ACNGT	1 cut(s)	247
TasI	AATT	1 cut(s)	200
TauI	GCSGC	2 cut(s)	40, 260
TfiI	GAWTC	1 cut(s)	167
TseI	GCWGC	1 cut(s)	56
XapI	RAATTY	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.