Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

22050421 .. 22050597

Gene Structure 177 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1091300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 177 bp

ATGACTTTCCTCGCCCAAGCTTCTGCTACCATTTCCATCTCATTCAAGCCCACTTTGGCACCTGGCAGCATGAGCTCTGGTTTGAAATCAGTTTCCTTTTCCGTCACTGGAAAGCGTTTTCCATCTCTGAGTTCCCAACCTAGGCGCCTCCAAATTTCTTGTGCGGCCAAACCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006732 GO:0006790 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009106 GO:0009107 GO:0009108 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009987 GO:0016043 GO:0016051 GO:0016053 GO:0016226 GO:0018130 GO:0019637 GO:0019752 GO:0019842 GO:0022607 GO:0031163 GO:0031177 GO:0031974 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044272 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0044571 GO:0044620 GO:0046394 GO:0046467 GO:0046483 GO:0046493 GO:0048037 GO:0051186 GO:0051188 GO:0051192 GO:0070013 GO:0071704 GO:0071840 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901360 GO:1901362 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko04932 ko05010 ko05012 ko05016 map00190 map01100 map04714 map04723 map04932 map05010 map05012 map05016

Pfam Domains

Protein Families

PP-binding

Protein Analysis

59

Amino Acids

6.06

Weight (kDa)

11.75

Isoelectric Point (pI)

56.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	58, 144
AciI	CCGC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	165
AcsI	RAATTY	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	145
AfiI	CCNNNNNNNGG	1 cut(s)	141
AgsI	TTSAA	2 cut(s)	46, 85
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	2 cut(s)	20, 75
AluI	AGCT	2 cut(s)	20, 75
Alw21I	GWGCWC	1 cut(s)	77
AoxI	GGCC	1 cut(s)	165
ApeKI	GCWGC	1 cut(s)	66
ApoI	RAATTY	1 cut(s)	153
AspA2I	CCTAGG	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	147
AvrII	CCTAGG	1 cut(s)	140
BanI	GGYRCC	2 cut(s)	58, 144
BanII	GRGCYC	1 cut(s)	77
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	1 cut(s)	78
BccI	CCATC	2 cut(s)	44, 130
BciT130I	CCWGG	1 cut(s)	63
BfaI	CTAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	148
BisI	GCNGC	2 cut(s)	67, 165
BlnI	CCTAGG	1 cut(s)	140
BlsI	GCNGC	2 cut(s)	68, 166
Bme1390I	CCNGG	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	60, 146
BmrFI	CCNGG	1 cut(s)	63
BsaHI	GRCGYC	1 cut(s)	145
BsaJI	CCNNGG	1 cut(s)	140
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	63
BseDI	CCNNGG	1 cut(s)	140
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	119
BseNI	ACTGG	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	78
BshFI	GGCC	1 cut(s)	167
BshNI	GGYRCC	2 cut(s)	58, 144
BsiHKAI	GWGCWC	1 cut(s)	77
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	167
Bsp1286I	GDGCHC	1 cut(s)	77
BspACI	CCGC	1 cut(s)	164
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	60, 146
BspT107I	GGYRCC	2 cut(s)	58, 144
BsrI	ACTGG	1 cut(s)	112
BssECI	CCNNGG	1 cut(s)	140
BssNI	GRCGYC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	140
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	174
BstACI	GRCGYC	1 cut(s)	145
BstDEI	CTNAG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	148
BstHHI	GCGC	1 cut(s)	147
BstMWI	GCNNNNNNNGC	1 cut(s)	72
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	78
BsuRI	GGCC	1 cut(s)	167
BtsIMutI	CAGTG	1 cut(s)	105
CfoI	GCGC	1 cut(s)	147
CviAII	CATG	1 cut(s)	70
CviJI	RGCY	4 cut(s)	20, 49, 75, 167
CviKI_1	RGCY	4 cut(s)	20, 49, 75, 167
DdeI	CTNAG	1 cut(s)	128
DinI	GGCGCC	1 cut(s)	146
EaeI	YGGCCR	1 cut(s)	165
Ecl136II	GAGCTC	1 cut(s)	75
Eco130I	CCWWGG	1 cut(s)	140
Eco24I	GRGCYC	1 cut(s)	77
Eco53kI	GAGCTC	1 cut(s)	75
EcoICRI	GAGCTC	1 cut(s)	75
EcoRII	CCWGG	1 cut(s)	61
EcoT14I	CCWWGG	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	77
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	140
FaeI	CATG	1 cut(s)	73
FaiI	YATR	1 cut(s)	71
FatI	CATG	1 cut(s)	69
Fnu4HI	GCNGC	2 cut(s)	67, 165
FriOI	GRGCYC	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	67, 165
FspBI	CTAG	1 cut(s)	141
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	2 cut(s)	67, 165
HaeII	RGCGCY	1 cut(s)	148
HaeIII	GGCC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	147
Hin1I	GRCGYC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	73
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	129
HpyCH4III	ACNGT	1 cut(s)	174
HpyF10VI	GCNNNNNNNGC	1 cut(s)	72
HpyF3I	CTNAG	1 cut(s)	128
Hsp92I	GRCGYC	1 cut(s)	145
Hsp92II	CATG	1 cut(s)	73
HspAI	GCGC	1 cut(s)	145
KasI	GGCGCC	1 cut(s)	144
LpnPI	CCDG	4 cut(s)	48, 63, 75, 93
Lsp1109I	GCAGC	1 cut(s)	78
MaeI	CTAG	1 cut(s)	141
MaeIII	GTNAC	1 cut(s)	103
MhlI	GDGCHC	1 cut(s)	77
MluCI	AATT	1 cut(s)	153
Mly113I	GGCGCC	1 cut(s)	145
MnlI	CCTC	2 cut(s)	20, 158
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	72
NarI	GGCGCC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	73
NlaIV	GGNNCC	2 cut(s)	60, 146
NmuCI	GTSAC	1 cut(s)	103
PkrI	GCNGC	2 cut(s)	68, 166
PluTI	GGCGCC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	60, 146
SacI	GAGCTC	1 cut(s)	77
SatI	GCNGC	2 cut(s)	67, 165
ScrFI	CCNGG	1 cut(s)	63
SduI	GDGCHC	1 cut(s)	77
SetI	ASST	4 cut(s)	22, 64, 77, 142
SfoI	GGCGCC	1 cut(s)	146
Sse9I	AATT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	164
SspDI	GGCGCC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	141
SstI	GAGCTC	1 cut(s)	77
StyD4I	CCNGG	1 cut(s)	61
StyI	CCWWGG	1 cut(s)	140
TaaI	ACNGT	1 cut(s)	174
TasI	AATT	1 cut(s)	153
TauI	GCSGC	1 cut(s)	167
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	103
TseI	GCWGC	1 cut(s)	66
Tsp45I	GTSAC	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	91
TspRI	CASTG	1 cut(s)	112
XapI	RAATTY	1 cut(s)	153
XmaJI	CCTAGG	1 cut(s)	140
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.