Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002077

Physical Location & Seq

Genomic Coordinates Forward (+)

2276485 .. 2278339

Gene Structure 1855 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g04190.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCCGCCACCACAGGAGCTGCTTCTTCGATCTCACTCCGCTCTCGCCTTCACCAGAATCTTGCACTGTCCAGGGTCAATGGTCTTAAGCCAGTTTCACTGTCTGGTAATGGAAGAAGTTCTCTTTCTTTCGGGTTACAGCAGCGTTCAGTACGGCTTCAGATTTGCTGCGCGGCCAAACCAGAGACAGTGGACAAGGTGTGCCAGATAGTTAGAAAGCAACTTGCATTACCAGATGACTCAGCAGTTTCTGGAGAGTCAAAATTTTCTGCACTTGGAGCTGATTCTCTTGATACGGTTGAGATTGTGATGGGACTTGAAGAGGAATTTGGTATTAGTGTGGAAGAGGAGAGTGCTCAGAGCATTGCAACTGTTCAGGATGCTGCGGATCTTATCGAGAAGCTCATTGAGAAGACCAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000035 GO:0000036 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0006082 GO:0006629 GO:0006631 GO:0006633 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009245 GO:0009247 GO:0009311 GO:0009312 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016051 GO:0016053 GO:0019637 GO:0019752 GO:0019842 GO:0031177 GO:0032787 GO:0033218 GO:0036094 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0044620 GO:0046394 GO:0046467 GO:0046493 GO:0048037 GO:0050896 GO:0051192 GO:0071704 GO:0072330 GO:0072341 GO:0090407 GO:0140104 GO:1901135 GO:1901137 GO:1901269 GO:1901271 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PP-binding

Protein Analysis

142

Amino Acids

14.89

Weight (kDa)

5.2

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PP-binding	PF00550	65 - 132	6.6e-11	Phosphopantetheine attachment site

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G54580 AT1G54630 AT1G54630 AT3G05020 AT5G27200
fragaria_vesca	FvH4_4g17070 FvH4_6g04190
malus_domestica	MD00G1052000.v1.1 MD06G1091300.v1.1 MD06G1091400.v1.1 MD12G1230300.v1.1 MD12G1230700.v1.1 MD12G1231000.v1.1 MD13G1174500.v1.1 MD15G1211200.v1.1 MD16G1176100.v1.1
prunus_persica	Prupe.1G142900_v2.0.a1 Prupe.1G142900_v2.0.a1 Prupe.6G335300_v2.0.a1 Prupe.6G335300_v2.0.a1
pyrus_communis	pycom04g19020 pycom04g19100 pycom16g14750
rosa_chinensis	RchiOBHm_Chr2g0104581 RchiOBHm_Chr3g0452861 RchiOBHm_Chr4g0420871
rosa_laevigata	RLG00000007731 RLG00000025565
rosa_multiflora	Rmu_sc0002006.1_g000014 Rmu_sc0002823.1_g000010
rosa_roxburghii	Rroxscaffold_5G00363280 Rroxscaffold_6G00429870
rosa_rugosa	Rorug02G0643100 Rorug04G0166600
rosa_samantha	Rh3AG046000 Rh3BG048400 Rh3CG047000 Rh3DG048000 Rh4AG227900 Rh4BG231100 Rh4CG242900 Rh4DG226200
rosa_wichuraiana	Rw3G003600 Rw4G019740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	42
AccII	CGCG	1 cut(s)	173
AciI	CCGC	4 cut(s)	6, 40, 173, 386
AclWI	GGATC	1 cut(s)	396
AcoI	YGGCCR	2 cut(s)	3, 174
AcsI	RAATTY	2 cut(s)	263, 326
AcuI	CTGAAG	1 cut(s)	143
AfaI	GTAC	1 cut(s)	153
AflII	CTTAAG	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	320
AjnI	CCWGG	1 cut(s)	71
AjuI	GAANNNNNNNTTGG	2 cut(s)	312, 344
AluBI	AGCT	3 cut(s)	20, 281, 403
AluI	AGCT	3 cut(s)	20, 281, 403
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	179
AlwI	GGATC	1 cut(s)	396
AlwNI	CAGNNNCTG	2 cut(s)	20, 251
AoxI	GGCC	2 cut(s)	3, 174
ApeKI	GCWGC	4 cut(s)	20, 142, 168, 383
ApoI	RAATTY	2 cut(s)	263, 326
Asp700I	GAANNNNTTC	1 cut(s)	118
AspLEI	GCGC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	44
BbsI	GAAGAC	1 cut(s)	419
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	4 cut(s)	7, 154, 155, 370
BccI	CCATC	1 cut(s)	304
BceAI	ACGGC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	73
BcoDI	GTCTC	1 cut(s)	179
BfrI	CTTAAG	1 cut(s)	86
BisI	GCNGC	6 cut(s)	6, 21, 143, 169, 174, 384
BlsI	GCNGC	6 cut(s)	7, 22, 144, 170, 175, 385
Bme1390I	CCNGG	1 cut(s)	73
BmrFI	CCNGG	1 cut(s)	73
BmsI	GCATC	1 cut(s)	370
BpiI	GAAGAC	1 cut(s)	419
BpmI	CTGGAG	1 cut(s)	273
BsaJI	CCNNGG	2 cut(s)	72, 417
Bse1I	ACTGG	1 cut(s)	92
Bse3DI	GCAATG	1 cut(s)	363
BseBI	CCWGG	1 cut(s)	73
BseDI	CCNNGG	2 cut(s)	72, 417
BseGI	GGATG	1 cut(s)	385
BseMI	GCAATG	1 cut(s)	363
BseMII	CTCAG	2 cut(s)	255, 371
BseNI	ACTGG	1 cut(s)	92
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	4 cut(s)	7, 154, 155, 370
BsgI	GTGCAG	1 cut(s)	255
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	2 cut(s)	5, 176
BsiHKAI	GWGCWC	1 cut(s)	358
BslFI	GGGAC	1 cut(s)	327
BsmAI	GTCTC	1 cut(s)	179
BsmFI	GGGAC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	5, 176
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	2 cut(s)	30, 388
BspACI	CCGC	4 cut(s)	6, 40, 173, 386
BspANI	GGCC	2 cut(s)	5, 176
BspCNI	CTCAG	2 cut(s)	254, 370
BspFNI	CGCG	1 cut(s)	173
BspPI	GGATC	1 cut(s)	396
BspTI	CTTAAG	1 cut(s)	86
BsrBI	CCGCTC	1 cut(s)	42
BsrDI	GCAATG	1 cut(s)	363
BsrI	ACTGG	1 cut(s)	92
BssECI	CCNNGG	2 cut(s)	72, 417
BssMI	GATC	2 cut(s)	30, 388
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	73
Bst4CI	ACNGT	5 cut(s)	69, 102, 190, 298, 373
Bst6I	CTCTTC	2 cut(s)	315, 339
BstAFI	CTTAAG	1 cut(s)	86
BstDEI	CTNAG	3 cut(s)	241, 357, 423
BstF5I	GGATG	1 cut(s)	385
BstFNI	CGCG	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	2 cut(s)	33, 391
BstMAI	GTCTC	1 cut(s)	179
BstMBI	GATC	2 cut(s)	30, 388
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	1 cut(s)	73
BstSCI	CCNGG	1 cut(s)	71
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	4 cut(s)	7, 154, 155, 370
BstV2I	GAAGAC	1 cut(s)	419
BstX2I	RGATCY	1 cut(s)	388
BstYI	RGATCY	1 cut(s)	388
BsuRI	GGCC	2 cut(s)	5, 176
BtsCI	GGATG	1 cut(s)	385
BtsIMutI	CAGTG	3 cut(s)	65, 98, 195
CaiI	CAGNNNCTG	2 cut(s)	20, 251
CfoI	GCGC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	152
CviJI	RGCY	8 cut(s)	5, 20, 91, 157, 176, 281, 403, 422
CviKI_1	RGCY	8 cut(s)	5, 20, 91, 157, 176, 281, 403, 422
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	241, 357, 423
DpnI	GATC	2 cut(s)	32, 390
DpnII	GATC	2 cut(s)	30, 388
EaeI	YGGCCR	2 cut(s)	3, 174
Eam1104I	CTCTTC	2 cut(s)	315, 339
EarI	CTCTTC	2 cut(s)	315, 339
Eco130I	CCWWGG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	71
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaqI	GGGAC	1 cut(s)	327
Fnu4HI	GCNGC	6 cut(s)	6, 21, 143, 169, 174, 384
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	6 cut(s)	6, 21, 143, 169, 174, 384
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	6 cut(s)	6, 21, 143, 169, 174, 384
GsuI	CTGGAG	1 cut(s)	273
HaeIII	GGCC	2 cut(s)	5, 176
HhaI	GCGC	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	4 cut(s)	58, 239, 257, 284
HphI	GGTGA	1 cut(s)	44
Hpy166II	GTNNAC	1 cut(s)	193
Hpy188I	TCNGA	2 cut(s)	162, 360
Hpy188III	TCNNGA	4 cut(s)	252, 290, 377, 397
Hpy8I	GTNNAC	1 cut(s)	193
HpyAV	CCTTC	1 cut(s)	59
HpyCH4III	ACNGT	5 cut(s)	69, 102, 190, 298, 373
HpyCH4V	TGCA	4 cut(s)	65, 227, 272, 368
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	3 cut(s)	241, 357, 423
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	2 cut(s)	30, 388
LmnI	GCTCC	2 cut(s)	17, 278
Lsp1109I	GCAGC	4 cut(s)	7, 154, 155, 370
LweI	GCATC	1 cut(s)	370
MaeIII	GTNAC	1 cut(s)	135
MalI	GATC	2 cut(s)	32, 390
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	2 cut(s)	30, 388
MboII	GAAGA	5 cut(s)	18, 126, 332, 356, 424
MflI	RGATCY	1 cut(s)	388
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	2 cut(s)	263, 326
MlyI	GAGTC	2 cut(s)	233, 266
MnlI	CCTC	2 cut(s)	316, 340
MroXI	GAANNNNTTC	1 cut(s)	118
MseI	TTAA	1 cut(s)	87
MspCI	CTTAAG	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	73
MvaI	CCWGG	1 cut(s)	73
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	2 cut(s)	30, 388
PdmI	GAANNNNTTC	1 cut(s)	118
PfeI	GAWTC	2 cut(s)	58, 284
PkrI	GCNGC	6 cut(s)	7, 22, 144, 170, 175, 385
PleI	GAGTC	2 cut(s)	233, 265
PpsI	GAGTC	2 cut(s)	233, 265
Psp6I	CCWGG	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	71
PstNI	CAGNNNCTG	2 cut(s)	20, 251
PsuI	RGATCY	1 cut(s)	388
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	87
SatI	GCNGC	6 cut(s)	6, 21, 143, 169, 174, 384
Sau3AI	GATC	2 cut(s)	30, 388
SchI	GAGTC	2 cut(s)	233, 266
ScrFI	CCNGG	1 cut(s)	73
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	4 cut(s)	22, 201, 283, 405
SfaNI	GCATC	1 cut(s)	370
SmlI	CTYRAG	1 cut(s)	86
SmoI	CTYRAG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	263, 326
SsiI	CCGC	4 cut(s)	6, 40, 173, 386
StyD4I	CCNGG	1 cut(s)	71
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	5 cut(s)	69, 102, 190, 298, 373
TaqI	TCGA	2 cut(s)	29, 396
TasI	AATT	2 cut(s)	263, 326
TauI	GCSGC	2 cut(s)	8, 176
TfiI	GAWTC	2 cut(s)	58, 284
Tru1I	TTAA	1 cut(s)	87
Tru9I	TTAA	1 cut(s)	87
TscAI	CASTG	3 cut(s)	72, 105, 195
TseI	GCWGC	4 cut(s)	20, 142, 168, 383
TspRI	CASTG	3 cut(s)	72, 105, 195
Vha464I	CTTAAG	1 cut(s)	86
XapI	RAATTY	2 cut(s)	263, 326
XmnI	GAANNNNTTC	1 cut(s)	118

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.