Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

20853872 .. 20856122

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G55790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1221 bp

ATGGCGATGAGAGAGCTCTCGCAGCTTAACAGAGACAGCGACGGTGATGAAGAAGTATGGGTCAAACACTATTCATCCAACCATCAGATACTTCTCGTCGGCGAAGGAGATTTCTCATTCTCTCACAGCTTAGCCACTCTCTTCGGCTCTGCTTCCAATATCTGCGCTTCCTCTCTCGATTCATACGATGTTGTGGTTAGAAAGTACAAGAAGGCAAGATCAAACCTTAAAACTTTGAAGAGACTTGGAGCTTTACTTTTACATGGAGTTGATGCTACCACACTGCATTTTCACCCTGACCTTCGTTATAGAAGATTTGATCGCGTCATCTTCAACTTCCCTCACGCCGGTTTCCACGGCAGAGAGTCTGATTCCTCTCTTATACGGAAGCATAGAGAACTGGTGTTTGGATTTTTCAATGGTGCAAGCCGTTTGCTAAGAGCTAATGGGGAAGTTCATGTCTCTCACAAGAACAAAGCACCTTTTTCTGAGTGGAATCTCGAGGAGCTCGCTAGCAGATGCTTTCTTGTGTTGATTCAACGTGTGGCCTTCGAGAAGAACAATTACCCTGGTTATGAGAATAAGAGAGGAGATGGGCGTAGATGTGACCAACCTTTCCTTTTGGGAGAGTGCAGTACTTTCAAGTTCAGATTCTCTCGTGTCGCTAAGGAACTTTATGCAGAGAAAGTGAGATCGAGAGAAGTGAAGGAACGAGAATCAATGTATCCGGAAGCTATTTTAAACAAGCAGCCAGTGTCATTTGACCATAGGTATCGCCTCCAAACAGAATTTGAAGCTATCGCGGGGACTATAACCTTAGGCAAGTCCAAGATCCTCTGGTTAAGTCAAGAGAAAGGACATCTCCATTGGATCTTTGTTACTACCAAGAACGTAGATGTTTACAGCTCGAAGATTCCCGTTTTCCTCATCTGTACGCTGGAGAGTCGCCAGAGAGACATCGCCTGCTTTGTCAAGACTTTCCAGTTCAAGCTAGTCAAGAACCACTATCCGAATACTCTAACCGCTGGAGTGGAGTTTCTCGTGAAATTTATAACTGGGAAGTACGAAGAATGTCAACAAGTAACTTATCTTCGAAAGAACTTCTCAGGATACGGTGATGGAAACAAGGTGAGTGAAGCTTGGAGTGACTCAAGCATCTCTAAGAATGGCGTGATTTATGTTATATTCTGTTTCTTAGCATGGCAGTTAGTTAACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004826 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006432 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

406

Amino Acids

46.93

Weight (kDa)

9.31

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	31 - 196	1.6e-55	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1052
AccII	CGCG	2 cut(s)	324, 803
AccIII	TCCGGA	1 cut(s)	727
AciI	CCGC	2 cut(s)	803, 1023
AclWI	GGATC	2 cut(s)	826, 878
AcsI	RAATTY	2 cut(s)	788, 1046
AfaI	GTAC	4 cut(s)	206, 637, 934, 1064
AfiI	CCNNNNNNNGG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	541
AgsI	TTSAA	7 cut(s)	238, 334, 418, 539, 643, 794, 988
AjnI	CCWGG	1 cut(s)	568
AjuI	GAANNNNNNNTTGG	2 cut(s)	390, 422
Alw21I	GWGCWC	2 cut(s)	18, 510
Alw26I	GTCTC	4 cut(s)	27, 235, 466, 948
AlwI	GGATC	2 cut(s)	826, 878
Ama87I	CYCGRG	1 cut(s)	500
Aor13HI	TCCGGA	1 cut(s)	727
AoxI	GGCC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	22, 748
ApoI	RAATTY	2 cut(s)	788, 1046
AspLEI	GCGC	1 cut(s)	167
AsuHPI	GGTGA	4 cut(s)	56, 284, 1127, 1141
AsuII	TTCGAA	1 cut(s)	1093
AsuNHI	GCTAGC	1 cut(s)	512
AvaI	CYCGRG	1 cut(s)	500
AxyI	CCTNAGG	1 cut(s)	817
BanII	GRGCYC	2 cut(s)	18, 510
BarI	GAAGNNNNNNTAC	4 cut(s)	548, 580, 1074, 1106
BauI	CACGAG	2 cut(s)	657, 1040
Bbv12I	GWGCWC	2 cut(s)	18, 510
BbvI	GCAGC	2 cut(s)	34, 760
BccI	CCATC	3 cut(s)	90, 587, 1112
BceAI	ACGGC	2 cut(s)	373, 414
BciT130I	CCWGG	1 cut(s)	570
BciVI	GTATCC	2 cut(s)	735, 1103
BcoDI	GTCTC	4 cut(s)	27, 235, 466, 948
BfaI	CTAG	2 cut(s)	513, 992
BfuI	GTATCC	2 cut(s)	735, 1103
BisI	GCNGC	2 cut(s)	23, 749
BlpI	GCTNAGC	1 cut(s)	130
BlsI	GCNGC	2 cut(s)	24, 750
BmcAI	AGTACT	1 cut(s)	637
Bme1390I	CCNGG	1 cut(s)	570
BmeT110I	CYCGRG	1 cut(s)	500
BmrFI	CCNGG	1 cut(s)	570
BmrI	ACTGGG	1 cut(s)	1065
BmsI	GCATC	3 cut(s)	262, 509, 1164
BmtI	GCTAGC	1 cut(s)	516
BmuI	ACTGGG	1 cut(s)	1065
BpmI	CTGGAG	2 cut(s)	959, 1047
Bpu10I	CCTNAGC	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	130
Bpu14I	TTCGAA	1 cut(s)	1093
BpuEI	CTTGAG	1 cut(s)	1135
BsaJI	CCNNGG	2 cut(s)	355, 568
BsaWI	WCCGGW	1 cut(s)	727
Bsc4I	CCNNNNNNNGG	1 cut(s)	347
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	4 cut(s)	405, 752, 982, 1060
Bse21I	CCTNAGG	1 cut(s)	817
BseAI	TCCGGA	1 cut(s)	727
BseBI	CCWGG	1 cut(s)	570
BseDI	CCNNGG	2 cut(s)	355, 568
BseGI	GGATG	1 cut(s)	74
BseLI	CCNNNNNNNGG	1 cut(s)	347
BseMII	CTCAG	2 cut(s)	480, 1119
BseNI	ACTGG	4 cut(s)	405, 752, 982, 1060
BseRI	GAGGAG	2 cut(s)	518, 603
BseXI	GCAGC	2 cut(s)	34, 760
BsgI	GTGCAG	1 cut(s)	652
Bsh1236I	CGCG	2 cut(s)	324, 803
BshFI	GGCC	1 cut(s)	548
BsiHKAI	GWGCWC	2 cut(s)	18, 510
BsiHKCI	CYCGRG	1 cut(s)	500
BsiSI	CCGG	2 cut(s)	348, 728
BslFI	GGGAC	1 cut(s)	820
BslI	CCNNNNNNNGG	1 cut(s)	347
BsmAI	GTCTC	4 cut(s)	27, 235, 466, 948
BsmFI	GGGAC	1 cut(s)	820
BsnI	GGCC	1 cut(s)	548
BsoBI	CYCGRG	1 cut(s)	500
Bsp119I	TTCGAA	1 cut(s)	1093
Bsp1286I	GDGCHC	2 cut(s)	18, 510
Bsp13I	TCCGGA	1 cut(s)	727
Bsp143I	GATC	5 cut(s)	218, 319, 692, 831, 870
Bsp1720I	GCTNAGC	1 cut(s)	130
BspACI	CCGC	2 cut(s)	803, 1023
BspANI	GGCC	1 cut(s)	548
BspCNI	CTCAG	2 cut(s)	481, 1118
BspEI	TCCGGA	1 cut(s)	727
BspFNI	CGCG	2 cut(s)	324, 803
BspOI	GCTAGC	1 cut(s)	516
BspPI	GGATC	2 cut(s)	826, 878
BspT104I	TTCGAA	1 cut(s)	1093
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	4 cut(s)	405, 752, 982, 1060
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	2 cut(s)	355, 568
BssMI	GATC	5 cut(s)	218, 319, 692, 831, 870
BssSI	CACGAG	2 cut(s)	657, 1040
Bst2BI	CACGAG	2 cut(s)	657, 1040
Bst2UI	CCWGG	1 cut(s)	570
Bst4CI	ACNGT	2 cut(s)	44, 1115
Bst6I	CTCTTC	2 cut(s)	146, 233
BstBI	TTCGAA	1 cut(s)	1093
BstC8I	GCNNGC	4 cut(s)	427, 510, 514, 964
BstDEI	CTNAG	8 cut(s)	130, 437, 489, 666, 817, 1105, 1161, 1195
BstDSI	CCRYGG	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	74
BstFNI	CGCG	2 cut(s)	324, 803
BstHHI	GCGC	1 cut(s)	167
BstKTI	GATC	5 cut(s)	221, 322, 695, 834, 873
BstMAI	GTCTC	4 cut(s)	27, 235, 466, 948
BstMBI	GATC	5 cut(s)	218, 319, 692, 831, 870
BstMWI	GCNNNNNNNGC	1 cut(s)	22
BstNI	CCWGG	1 cut(s)	570
BstSCI	CCNGG	1 cut(s)	568
BstUI	CGCG	2 cut(s)	324, 803
BstV1I	GCAGC	2 cut(s)	34, 760
BstX2I	RGATCY	2 cut(s)	831, 870
BstYI	RGATCY	2 cut(s)	831, 870
Bsu36I	CCTNAGG	1 cut(s)	817
BsuI	GTATCC	2 cut(s)	735, 1103
BsuRI	GGCC	1 cut(s)	548
BtgI	CCRYGG	1 cut(s)	355
BtgZI	GCGATG	2 cut(s)	20, 943
BtsCI	GGATG	1 cut(s)	74
BtsI	GCAGTG	1 cut(s)	281
BtsIMutI	CAGTG	2 cut(s)	281, 759
Cac8I	GCNNGC	4 cut(s)	427, 510, 514, 964
CfoI	GCGC	1 cut(s)	167
Cfr10I	RCCGGY	1 cut(s)	347
CseI	GACGC	1 cut(s)	313
Csp6I	GTAC	4 cut(s)	205, 636, 933, 1063
CviAII	CATG	3 cut(s)	263, 458, 1200
CviQI	GTAC	4 cut(s)	205, 636, 933, 1063
DdeI	CTNAG	8 cut(s)	130, 437, 489, 666, 817, 1105, 1161, 1195
DpnI	GATC	5 cut(s)	220, 321, 694, 833, 872
DpnII	GATC	5 cut(s)	218, 319, 692, 831, 870
DraI	TTTAAA	1 cut(s)	741
Eam1104I	CTCTTC	2 cut(s)	146, 233
EarI	CTCTTC	2 cut(s)	146, 233
Ecl136II	GAGCTC	2 cut(s)	16, 508
Eco24I	GRGCYC	2 cut(s)	18, 510
Eco53kI	GAGCTC	2 cut(s)	16, 508
Eco81I	CCTNAGG	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	500
EcoICRI	GAGCTC	2 cut(s)	16, 508
EcoRII	CCWGG	1 cut(s)	568
EcoT38I	GRGCYC	2 cut(s)	18, 510
FaeI	CATG	3 cut(s)	266, 461, 1203
FaqI	GGGAC	1 cut(s)	820
FatI	CATG	3 cut(s)	262, 457, 1199
FauI	CCCGC	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	23, 749
FokI	GGATG	1 cut(s)	61
FriOI	GRGCYC	2 cut(s)	18, 510
Fsp4HI	GCNGC	2 cut(s)	23, 749
FspBI	CTAG	2 cut(s)	513, 992
GlaI	GCGC	1 cut(s)	166
GluI	GCNGC	2 cut(s)	23, 749
GsuI	CTGGAG	2 cut(s)	959, 1047
HaeIII	GGCC	1 cut(s)	548
HapII	CCGG	2 cut(s)	348, 728
HgaI	GACGC	1 cut(s)	313
HhaI	GCGC	1 cut(s)	167
Hin1II	CATG	3 cut(s)	266, 461, 1203
Hin6I	GCGC	1 cut(s)	165
HinP1I	GCGC	1 cut(s)	165
HincII	GTYRAC	2 cut(s)	1076, 1213
HindII	GTYRAC	2 cut(s)	1076, 1213
HindIII	AAGCTT	1 cut(s)	1137
HpaI	GTTAAC	1 cut(s)	1213
HpaII	CCGG	2 cut(s)	348, 728
HphI	GGTGA	4 cut(s)	56, 284, 1127, 1141
Hpy166II	GTNNAC	3 cut(s)	901, 1076, 1213
Hpy188I	TCNGA	5 cut(s)	87, 370, 490, 650, 1011
Hpy8I	GTNNAC	3 cut(s)	901, 1076, 1213
Hpy99I	CGWCG	2 cut(s)	44, 101
HpyAV	CCTTC	5 cut(s)	98, 205, 311, 559, 700
HpyCH4III	ACNGT	2 cut(s)	44, 1115
HpyCH4IV	ACGT	2 cut(s)	541, 891
HpyCH4V	TGCA	4 cut(s)	286, 425, 633, 680
HpyF10VI	GCNNNNNNNGC	1 cut(s)	22
HpyF3I	CTNAG	8 cut(s)	130, 437, 489, 666, 817, 1105, 1161, 1195
HpySE526I	ACGT	2 cut(s)	541, 891
Hsp92II	CATG	3 cut(s)	266, 461, 1203
HspAI	GCGC	1 cut(s)	165
Kpn2I	TCCGGA	1 cut(s)	727
KspAI	GTTAAC	1 cut(s)	1213
Kzo9I	GATC	5 cut(s)	218, 319, 692, 831, 870
LmnI	GCTCC	2 cut(s)	248, 505
Lsp1109I	GCAGC	2 cut(s)	34, 760
LweI	GCATC	3 cut(s)	262, 509, 1164
MaeI	CTAG	2 cut(s)	513, 992
MaeII	ACGT	2 cut(s)	541, 891
MaeIII	GTNAC	4 cut(s)	605, 877, 1081, 1145
MalI	GATC	5 cut(s)	220, 321, 694, 833, 872
MboI	GATC	5 cut(s)	218, 319, 692, 831, 870
MboII	GAAGA	9 cut(s)	62, 133, 250, 322, 324, 568, 922, 1079, 1082
MflI	RGATCY	2 cut(s)	831, 870
MhlI	GDGCHC	2 cut(s)	18, 510
MluCI	AATT	3 cut(s)	562, 788, 1046
MlyI	GAGTC	3 cut(s)	374, 952, 1142
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	8 cut(s)	181, 351, 385, 496, 581, 788, 845, 935
MroI	TCCGGA	1 cut(s)	727
MseI	TTAA	5 cut(s)	27, 228, 740, 842, 1212
MspA1I	CMGCKG	1 cut(s)	1025
MspI	CCGG	2 cut(s)	348, 728
MspR9I	CCNGG	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	570
MvnI	CGCG	2 cut(s)	324, 803
MwoI	GCNNNNNNNGC	1 cut(s)	22
NdeII	GATC	5 cut(s)	218, 319, 692, 831, 870
NheI	GCTAGC	1 cut(s)	512
NlaIII	CATG	3 cut(s)	266, 461, 1203
NmuCI	GTSAC	2 cut(s)	605, 1145
NspV	TTCGAA	1 cut(s)	1093
PaeR7I	CTCGAG	1 cut(s)	500
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	7 cut(s)	179, 371, 496, 535, 651, 716, 913
PkrI	GCNGC	2 cut(s)	24, 750
PleI	GAGTC	3 cut(s)	373, 951, 1142
PpsI	GAGTC	3 cut(s)	373, 951, 1142
PsiI	TTATAA	1 cut(s)	1052
Psp124BI	GAGCTC	2 cut(s)	18, 510
Psp6I	CCWGG	1 cut(s)	568
PspGI	CCWGG	1 cut(s)	568
PsuI	RGATCY	2 cut(s)	831, 870
RsaI	GTAC	4 cut(s)	206, 637, 934, 1064
RsaNI	GTAC	4 cut(s)	205, 636, 933, 1063
SacI	GAGCTC	2 cut(s)	18, 510
SaqAI	TTAA	5 cut(s)	27, 228, 740, 842, 1212
SatI	GCNGC	2 cut(s)	23, 749
Sau3AI	GATC	5 cut(s)	218, 319, 692, 831, 870
ScaI	AGTACT	1 cut(s)	637
SchI	GAGTC	3 cut(s)	374, 952, 1142
ScrFI	CCNGG	1 cut(s)	570
SduI	GDGCHC	2 cut(s)	18, 510
SfaNI	GCATC	3 cut(s)	262, 509, 1164
Sfr274I	CTCGAG	1 cut(s)	500
SfuI	TTCGAA	1 cut(s)	1093
SlaI	CTCGAG	1 cut(s)	500
SmlI	CTYRAG	2 cut(s)	500, 1150
SmoI	CTYRAG	2 cut(s)	500, 1150
Sse9I	AATT	3 cut(s)	562, 788, 1046
SsiI	CCGC	2 cut(s)	803, 1023
SspMI	CTAG	2 cut(s)	513, 992
SstI	GAGCTC	2 cut(s)	18, 510
StyD4I	CCNGG	1 cut(s)	568
TaaI	ACNGT	2 cut(s)	44, 1115
TaiI	ACGT	2 cut(s)	544, 894
TaqI	TCGA	6 cut(s)	177, 501, 552, 695, 908, 1093
TasI	AATT	3 cut(s)	562, 788, 1046
TatI	WGTACW	2 cut(s)	204, 635
TfiI	GAWTC	7 cut(s)	179, 371, 496, 535, 651, 716, 913
Tru1I	TTAA	5 cut(s)	27, 228, 740, 842, 1212
Tru9I	TTAA	5 cut(s)	27, 228, 740, 842, 1212
TscAI	CASTG	2 cut(s)	288, 759
TseFI	GTSAC	2 cut(s)	605, 1145
TseI	GCWGC	2 cut(s)	22, 748
Tsp45I	GTSAC	2 cut(s)	605, 1145
TspDTI	ATGAA	4 cut(s)	63, 63, 171, 446
TspGWI	ACGGA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	288, 759
XapI	RAATTY	2 cut(s)	788, 1046
XhoI	CTCGAG	1 cut(s)	500
XspI	CTAG	2 cut(s)	513, 992
ZrmI	AGTACT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.