Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

72225837 .. 72226049

Gene Structure 213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ52418

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGGAGCGGTGGATTGAGCACTACTCTAGCTCACAGCAGATACTGCTGGTTGGGGAAGGCGACTTCTCATTCTCTGCTTGCTTGGCTCGAGCTTTTCGTTACGCTCCTAACATGGTTGCTACTTCTCTCGACTCCCAAGGTACATTACTGGTTTATACTAAGCCCTGTTGTGCAAGTAACTATTCTGATTTAGGGTTCATCAATTTGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

70

Amino Acids

7.8

Weight (kDa)

4.75

Isoelectric Point (pI)

53.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	15 - 51	1.2e-09	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	7
AciI	CCGC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	142
AluBI	AGCT	2 cut(s)	30, 92
AluI	AGCT	2 cut(s)	30, 92
Alw21I	GWGCWC	1 cut(s)	21
AlwNI	CAGNNNCTG	1 cut(s)	43
Ama87I	CYCGRG	1 cut(s)	87
AvaI	CYCGRG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	27, 211
BmeT110I	CYCGRG	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	8, 40
BsaJI	CCNNGG	1 cut(s)	136
Bse1I	ACTGG	1 cut(s)	153
BseDI	CCNNGG	1 cut(s)	136
BseNI	ACTGG	1 cut(s)	153
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	7
BsrBI	CCGCTC	1 cut(s)	7
BsrI	ACTGG	1 cut(s)	153
BssECI	CCNNGG	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	43
BstC8I	GCNNGC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	159
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 83
Cac8I	GCNNGC	1 cut(s)	79
CaiI	CAGNNNCTG	1 cut(s)	43
Csp6I	GTAC	1 cut(s)	141
CviAII	CATG	1 cut(s)	112
CviJI	RGCY	4 cut(s)	30, 86, 92, 163
CviKI_1	RGCY	4 cut(s)	30, 86, 92, 163
CviQI	GTAC	1 cut(s)	141
DdeI	CTNAG	1 cut(s)	159
Eco130I	CCWWGG	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	1 cut(s)	115
FaiI	YATR	2 cut(s)	113, 156
FatI	CATG	1 cut(s)	111
FspBI	CTAG	2 cut(s)	27, 211
Hin1II	CATG	1 cut(s)	115
HinfI	GANTC	1 cut(s)	131
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	128
HpyAV	CCTTC	1 cut(s)	50
HpyCH4V	TGCA	1 cut(s)	173
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 83
HpyF3I	CTNAG	1 cut(s)	159
Hsp92II	CATG	1 cut(s)	115
LmnI	GCTCC	2 cut(s)	4, 109
LpnPI	CCDG	3 cut(s)	32, 134, 178
MaeI	CTAG	2 cut(s)	27, 211
MaeIII	GTNAC	2 cut(s)	98, 176
MbiI	CCGCTC	1 cut(s)	7
MhlI	GDGCHC	1 cut(s)	21
MluCI	AATT	1 cut(s)	202
MlyI	GAGTC	1 cut(s)	125
MwoI	GCNNNNNNNGC	2 cut(s)	43, 83
NlaIII	CATG	1 cut(s)	115
PaeR7I	CTCGAG	1 cut(s)	87
PcsI	WCGNNNNNNNCGW	1 cut(s)	94
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PspXI	VCTCGAGB	1 cut(s)	87
PstNI	CAGNNNCTG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	142
RsaNI	GTAC	1 cut(s)	141
SchI	GAGTC	1 cut(s)	125
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	3 cut(s)	32, 94, 142
Sfr274I	CTCGAG	1 cut(s)	87
SlaI	CTCGAG	1 cut(s)	87
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	1 cut(s)	202
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	27, 211
StyI	CCWWGG	1 cut(s)	136
TaqI	TCGA	2 cut(s)	88, 129
TasI	AATT	1 cut(s)	202
TspDTI	ATGAA	1 cut(s)	187
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	2 cut(s)	27, 211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.