RchiOBHm_Chr5g0024491

At4g26485-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0005058
Physical Location & Seq
Reverse (-)
18637135 .. 18637344
210 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ30424

Sequence Viewer

Length: 210 bp
ATGGCACAAGAGAAAAGAATTGTGCATTATAGCAGCTCTCAGAAGATACTCTTGGTGGGTGAGGGAGACTTTTCCTTTGCTGCTTGTTTAGCCACAGCATTTGACTCTGCTGCCAACATAGTTGCTACCTCACTCAACTCCAGAGGTAATATAAACATTGACCAATATACCTCAATATTCAAGTACGTTATATGCTCACTAGTTATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2431

Protein Analysis

69

Amino Acids

7.51

Weight (kDa)

6.51

Isoelectric Point (pI)

58.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BMT5-like PF10354 17 - 52 1.4e-09 rRNA (uridine-N3-)-methyltransferase BTM5-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 181
AhlI ACTAGT 1 cut(s) 199
AjuI GAANNNNNNNTTGG 2 cut(s) 35, 67
AluBI AGCT 1 cut(s) 36
AluI AGCT 1 cut(s) 36
Alw26I GTCTC 1 cut(s) 60
ApeKI GCWGC 3 cut(s) 33, 80, 110
ArsI GACNNNNNNTTYG 2 cut(s) 59, 91
AsuHPI GGTGA 1 cut(s) 71
BbvI GCAGC 3 cut(s) 45, 67, 97
BcoDI GTCTC 1 cut(s) 60
BcuI ACTAGT 1 cut(s) 199
BfaI CTAG 1 cut(s) 200
BisI GCNGC 3 cut(s) 34, 81, 111
BlsI GCNGC 3 cut(s) 35, 82, 112
BpmI CTGGAG 1 cut(s) 124
BseMII CTCAG 1 cut(s) 53
BseXI GCAGC 3 cut(s) 45, 67, 97
BsmAI GTCTC 1 cut(s) 60
BspCNI CTCAG 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 89
BstV1I GCAGC 3 cut(s) 45, 67, 97
Csp6I GTAC 1 cut(s) 184
CspCI CAANNNNNGTGG 2 cut(s) 82, 117
CviJI RGCY 2 cut(s) 36, 92
CviKI_1 RGCY 2 cut(s) 36, 92
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 39
FaiI YATR 6 cut(s) 30, 119, 152, 168, 191, 193
FalI AAGNNNNNCTT 2 cut(s) 35, 67
Fnu4HI GCNGC 3 cut(s) 34, 81, 111
Fsp4HI GCNGC 3 cut(s) 34, 81, 111
FspBI CTAG 1 cut(s) 200
GluI GCNGC 3 cut(s) 34, 81, 111
GsuI CTGGAG 1 cut(s) 124
HinfI GANTC 1 cut(s) 104
HphI GGTGA 1 cut(s) 71
Hpy188I TCNGA 1 cut(s) 42
Hpy188III TCNNGA 1 cut(s) 141
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 25
HpyF10VI GCNNNNNNNGC 1 cut(s) 89
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 186
LpnPI CCDG 1 cut(s) 154
Lsp1109I GCAGC 3 cut(s) 45, 67, 97
MaeI CTAG 1 cut(s) 200
MaeII ACGT 1 cut(s) 186
MboII GAAGA 1 cut(s) 55
MluCI AATT 1 cut(s) 18
MlyI GAGTC 1 cut(s) 98
MnlI CCTC 4 cut(s) 55, 137, 139, 181
MwoI GCNNNNNNNGC 1 cut(s) 89
PkrI GCNGC 3 cut(s) 35, 82, 112
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SatI GCNGC 3 cut(s) 34, 81, 111
SchI GAGTC 1 cut(s) 98
SetI ASST 5 cut(s) 38, 131, 148, 173, 189
SgeI CNNG 5 cut(s) 20, 64, 96, 153, 193
SpeI ACTAGT 1 cut(s) 199
Sse9I AATT 1 cut(s) 18
SspI AATATT 1 cut(s) 177
SspMI CTAG 1 cut(s) 200
TaiI ACGT 1 cut(s) 189
TasI AATT 1 cut(s) 18
TseI GCWGC 3 cut(s) 33, 80, 110
XspI CTAG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.