Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

57317529 .. 57319906

Gene Structure 2378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0446700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGTGAACACAGACGCCATTAGAACTGTTGTTGGGATCATTGGTAATGTCATCTCTTTCGGCTTGTTTACGTCCCCAATCCCAACATTTGTAAAGATAATTAAGGACAAATCAGTTGGAGATTTCAAGGCGGATCCTTATGTAGCAACTTTGCTTAATTGTGCTATGTGGTCCTTTTATGGCCTTCCCATTGTCCATCCTGACAGTCTCCTCGTTGTTACGATCAATGGCGCTGGCTTCTTCATCGAACTCATCTATGTTTCAATCTTTCTCTTATATTCTCCTGCCCAAAAACGGCGAAAAATCATCAGTGCTCTTCTGGTTGAAGCAATCTTTTTTGCCGTTGTGGTTTTTATTACTATTCACGTTTTCCATACCACTAAAGACAGGTCTATGATAATTGGGATTTTGTGTATTGTCTTCAATATCATTATGTATGCATCACCCTTAACAGTCATGAAAATGGTCATCAAGACAAAAAGTGTCAAGTACATGCCATTTGCCCTCTCGCTCGCCAACTTTTGCAATGGAGTTGTCTGGTCTATTTATGCACTCCTCAAGTTTGACCCCTATGTTCTGATTCCTAATGGTTTGGGATCGCTTTCGGGCCTGGTGCAACTCATATTGTATGGCACTTACTACAGAACCACTAACTGGGATGATAACGATGAAAAGCCAAAACCTGAAGTTGAACTCCCTAAAGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

235

Amino Acids

26.26

Weight (kDa)

9.02

Isoelectric Point (pI)

27.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MtN3_slv	PF03083	10 - 97	6e-23	Sugar efflux transporter for intercellular exchange
MtN3_slv	PF03083	133 - 216	1.3e-25	Sugar efflux transporter for intercellular exchange

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AciI	CCGC	1 cut(s)	131
AclWI	GGATC	4 cut(s)	44, 128, 141, 604
AcuI	CTGAAG	1 cut(s)	705
AcyI	GRCGYC	1 cut(s)	15
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	2 cut(s)	294, 654
AgsI	TTSAA	5 cut(s)	127, 264, 326, 424, 692
AjnI	CCWGG	1 cut(s)	609
Alw21I	GWGCWC	1 cut(s)	316
Alw26I	GTCTC	1 cut(s)	212
AlwI	GGATC	4 cut(s)	44, 128, 141, 604
AoxI	GGCC	2 cut(s)	181, 607
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	171, 607
AsuHPI	GGTGA	2 cut(s)	16, 435
AvaII	GGWCC	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	412
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	1 cut(s)	204
BceAI	ACGGC	2 cut(s)	311, 326
BciT130I	CCWGG	1 cut(s)	611
BcoDI	GTCTC	1 cut(s)	212
BfmI	CTRYAG	1 cut(s)	640
BfoI	RGCGCY	1 cut(s)	234
Bme1390I	CCNGG	1 cut(s)	611
Bme18I	GGWCC	1 cut(s)	171
BmgT120I	GGNCC	2 cut(s)	171, 607
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	611
BmrI	ACTGGG	1 cut(s)	664
BmsI	GCATC	1 cut(s)	449
BmuI	ACTGGG	1 cut(s)	664
BpiI	GAAGAC	1 cut(s)	412
BpuEI	CTTGAG	1 cut(s)	542
BsaHI	GRCGYC	1 cut(s)	15
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 654
Bse1I	ACTGG	1 cut(s)	659
Bse3DI	GCAATG	1 cut(s)	532
BseBI	CCWGG	1 cut(s)	611
BseGI	GGATG	2 cut(s)	196, 664
BseLI	CCNNNNNNNGG	2 cut(s)	294, 654
BseMI	GCAATG	1 cut(s)	532
BseNI	ACTGG	1 cut(s)	659
BseRI	GAGGAG	2 cut(s)	200, 545
BshFI	GGCC	2 cut(s)	183, 609
BsiHKAI	GWGCWC	1 cut(s)	316
BslFI	GGGAC	1 cut(s)	58
BslI	CCNNNNNNNGG	2 cut(s)	294, 654
BsmAI	GTCTC	1 cut(s)	212
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	2 cut(s)	183, 609
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	4 cut(s)	36, 133, 222, 596
BspACI	CCGC	1 cut(s)	131
BspANI	GGCC	2 cut(s)	183, 609
BspHI	TCATGA	1 cut(s)	456
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	4 cut(s)	44, 128, 141, 604
BspQI	GCTCTTC	1 cut(s)	321
BsrDI	GCAATG	1 cut(s)	532
BsrI	ACTGG	1 cut(s)	659
BssMI	GATC	4 cut(s)	36, 133, 222, 596
BssNI	GRCGYC	1 cut(s)	15
Bst2UI	CCWGG	1 cut(s)	611
Bst4CI	ACNGT	3 cut(s)	28, 206, 454
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	235, 513
BstF5I	GGATG	2 cut(s)	196, 664
BstH2I	RGCGCY	1 cut(s)	234
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	4 cut(s)	39, 136, 225, 599
BstMAI	GTCTC	1 cut(s)	212
BstMBI	GATC	4 cut(s)	36, 133, 222, 596
BstNI	CCWGG	1 cut(s)	611
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	609
BstSFI	CTRYAG	1 cut(s)	640
BstV2I	GAAGAC	1 cut(s)	412
BstX2I	RGATCY	1 cut(s)	133
BstYI	RGATCY	1 cut(s)	133
BsuRI	GGCC	2 cut(s)	183, 609
BtsCI	GGATG	2 cut(s)	196, 664
BtsIMutI	CAGTG	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	235, 513
CciI	TCATGA	1 cut(s)	456
CfoI	GCGC	1 cut(s)	233
Cfr13I	GGNCC	2 cut(s)	171, 607
CseI	GACGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	2 cut(s)	457, 493
CviJI	RGCY	5 cut(s)	63, 183, 237, 609, 676
CviKI_1	RGCY	5 cut(s)	63, 183, 237, 609, 676
CviQI	GTAC	1 cut(s)	490
DpnI	GATC	4 cut(s)	38, 135, 224, 598
DpnII	GATC	4 cut(s)	36, 133, 222, 596
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
EciI	GGCGGA	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	705
EcoRII	CCWGG	1 cut(s)	609
EcoT22I	ATGCAT	1 cut(s)	442
FaeI	CATG	2 cut(s)	460, 496
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	2 cut(s)	456, 492
FokI	GGATG	2 cut(s)	183, 671
GlaI	GCGC	1 cut(s)	232
HaeII	RGCGCY	1 cut(s)	234
HaeIII	GGCC	2 cut(s)	183, 609
HgaI	GACGC	1 cut(s)	23
HhaI	GCGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	460, 496
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	1 cut(s)	580
HphI	GGTGA	2 cut(s)	16, 435
Hpy166II	GTNNAC	2 cut(s)	7, 69
Hpy188I	TCNGA	1 cut(s)	579
Hpy188III	TCNNGA	3 cut(s)	200, 457, 472
Hpy8I	GTNNAC	2 cut(s)	7, 69
HpyAV	CCTTC	1 cut(s)	194
HpyCH4III	ACNGT	3 cut(s)	28, 206, 454
HpyCH4IV	ACGT	2 cut(s)	71, 366
HpyCH4V	TGCA	4 cut(s)	440, 525, 551, 616
HpySE526I	ACGT	2 cut(s)	71, 366
Hsp92I	GRCGYC	1 cut(s)	15
Hsp92II	CATG	2 cut(s)	460, 496
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	4 cut(s)	36, 133, 222, 596
LguI	GCTCTTC	1 cut(s)	321
LweI	GCATC	1 cut(s)	449
MaeII	ACGT	2 cut(s)	71, 366
MaeIII	GTNAC	1 cut(s)	217
MalI	GATC	4 cut(s)	38, 135, 224, 598
MboI	GATC	4 cut(s)	36, 133, 222, 596
MboII	GAAGA	3 cut(s)	232, 308, 412
MflI	RGATCY	1 cut(s)	133
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	3 cut(s)	99, 157, 399
MmeI	TCCRAC	1 cut(s)	97
MnlI	CCTC	3 cut(s)	221, 515, 566
Mph1103I	ATGCAT	1 cut(s)	442
MseI	TTAA	3 cut(s)	102, 156, 449
MslI	CAYNNNNRTG	1 cut(s)	461
MspR9I	CCNGG	1 cut(s)	611
MvaI	CCWGG	1 cut(s)	611
NdeII	GATC	4 cut(s)	36, 133, 222, 596
NlaIII	CATG	2 cut(s)	460, 496
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	442
NspI	RCATGY	1 cut(s)	496
PagI	TCATGA	1 cut(s)	456
PciSI	GCTCTTC	1 cut(s)	321
PfeI	GAWTC	1 cut(s)	580
PflMI	CCANNNNNTGG	1 cut(s)	654
Psp6I	CCWGG	1 cut(s)	609
PspGI	CCWGG	1 cut(s)	609
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	2 cut(s)	171, 607
PsuI	RGATCY	1 cut(s)	133
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	1 cut(s)	461
SapI	GCTCTTC	1 cut(s)	321
SaqAI	TTAA	3 cut(s)	102, 156, 449
Sau3AI	GATC	4 cut(s)	36, 133, 222, 596
Sau96I	GGNCC	2 cut(s)	171, 607
ScrFI	CCNGG	1 cut(s)	611
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	4 cut(s)	74, 369, 392, 685
SfaNI	GCATC	1 cut(s)	449
SfcI	CTRYAG	1 cut(s)	640
SinI	GGWCC	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	461
SmlI	CTYRAG	1 cut(s)	557
SmoI	CTYRAG	1 cut(s)	557
Sse9I	AATT	3 cut(s)	99, 157, 399
SsiI	CCGC	1 cut(s)	131
StyD4I	CCNGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	28, 206, 454
TaiI	ACGT	2 cut(s)	74, 369
TaqI	TCGA	1 cut(s)	246
TasI	AATT	3 cut(s)	99, 157, 399
TatI	WGTACW	1 cut(s)	489
TfiI	GAWTC	1 cut(s)	580
Tru1I	TTAA	3 cut(s)	102, 156, 449
Tru9I	TTAA	3 cut(s)	102, 156, 449
TscAI	CASTG	1 cut(s)	316
TspDTI	ATGAA	3 cut(s)	232, 473, 684
TspRI	CASTG	1 cut(s)	316
Van91I	CCANNNNNTGG	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	171
XceI	RCATGY	1 cut(s)	496
Zsp2I	ATGCAT	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.