Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

31764439 .. 31766848

Gene Structure 2410 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g40260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGAGGTGGATAGAGCACTACAGTAGCTCACAGGAGATACTGCTGGTTGGGGAAGGCGACTTCTCATTCTCTGCTTGCTTGGCTCGAGCTTTTGGCCACGCATCAAACATGGTGGCTACTTCTCTAGACTCCCAAGAATCTCTGTGGGGAAAGCATCCGAGTTGTGTGTCACACTTGAATGAGTTGAGGCAGAGAGGATGCCTAGTGTTACATGATGTGGATGTGCATGACATGGACCTGCATTACTTCCTGAGCTGGAAGAAATTTGATGTTATCATCTTCAACTTTCCTCATGCAGGATTTTACCCTGGGCTTGGTGAAAGTCATTTTCAGGTCATTGAGATGCACAGGCAATTGCTCAGAGGGTTTTTTGCGAGCGCCCAAGTGATGCTTTACTCTGGTGGTGAAATTCATGTGACAACCAGGGATGACTTCCCCTATAATACATGGGATGTGGAGGAACTTGCTGATGAAGCAAGCCTGGTGTTGACAGAGAAAGTGTGGTTCGAAAAGTCTGACTACCCTGGCTATCGCAATAAGAGAGGCGGTAACATTGACAGCAACAAGTCATTTCCACTGGGAGAGAGCTACACCTTCAAGTTTGAAGTTGAATCTGATTATGGGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

211

Amino Acids

24.19

Weight (kDa)

5.1

Isoelectric Point (pI)

52.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	15 - 182	8.8e-52	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	249
AciI	CCGC	1 cut(s)	549
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	2 cut(s)	266, 411
AfiI	CCNNNNNNNGG	2 cut(s)	299, 317
AgsI	TTSAA	5 cut(s)	181, 286, 601, 608, 614
AjnI	CCWGG	4 cut(s)	310, 425, 483, 526
AluBI	AGCT	4 cut(s)	30, 92, 258, 591
AluI	AGCT	4 cut(s)	30, 92, 258, 591
Alw21I	GWGCWC	1 cut(s)	21
Ama87I	CYCGRG	1 cut(s)	87
AoxI	GGCC	1 cut(s)	97
ApoI	RAATTY	2 cut(s)	266, 411
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	2 cut(s)	332, 419
AsuII	TTCGAA	1 cut(s)	510
AvaI	CYCGRG	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	238
BalI	TGGCCA	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	21
BciT130I	CCWGG	4 cut(s)	312, 427, 485, 528
BfaI	CTAG	2 cut(s)	128, 206
BfmI	CTRYAG	1 cut(s)	22
BfoI	RGCGCY	1 cut(s)	384
BfuAI	ACCTGC	1 cut(s)	249
Bme1390I	CCNGG	4 cut(s)	312, 427, 485, 528
Bme18I	GGWCC	1 cut(s)	238
BmeT110I	CYCGRG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	4 cut(s)	312, 427, 485, 528
BmrI	ACTGGG	1 cut(s)	590
BmsI	GCATC	5 cut(s)	113, 166, 191, 336, 381
BmuI	ACTGGG	1 cut(s)	590
Bpu10I	CCTNAGC	1 cut(s)	254
Bpu14I	TTCGAA	1 cut(s)	510
BsaJI	CCNNGG	4 cut(s)	310, 311, 426, 526
Bsc4I	CCNNNNNNNGG	2 cut(s)	299, 317
Bse1I	ACTGG	1 cut(s)	585
BseBI	CCWGG	4 cut(s)	312, 427, 485, 528
BseDI	CCNNGG	4 cut(s)	310, 311, 426, 526
BseGI	GGATG	5 cut(s)	157, 206, 229, 436, 460
BseLI	CCNNNNNNNGG	2 cut(s)	299, 317
BseMII	CTCAG	2 cut(s)	245, 376
BseNI	ACTGG	1 cut(s)	585
BshFI	GGCC	1 cut(s)	99
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	87
BslI	CCNNNNNNNGG	2 cut(s)	299, 317
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	87
Bsp119I	TTCGAA	1 cut(s)	510
Bsp1286I	GDGCHC	1 cut(s)	21
BspACI	CCGC	1 cut(s)	549
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	246, 375
BspMI	ACCTGC	1 cut(s)	249
BspT104I	TTCGAA	1 cut(s)	510
BsrI	ACTGG	1 cut(s)	585
BssECI	CCNNGG	4 cut(s)	310, 311, 426, 526
Bst2UI	CCWGG	4 cut(s)	312, 427, 485, 528
Bst4CI	ACNGT	1 cut(s)	26
BstBI	TTCGAA	1 cut(s)	510
BstC8I	GCNNGC	3 cut(s)	79, 379, 481
BstDEI	CTNAG	2 cut(s)	254, 362
BstENI	CCTNNNNNAGG	1 cut(s)	297
BstF5I	GGATG	5 cut(s)	157, 206, 229, 436, 460
BstH2I	RGCGCY	1 cut(s)	384
BstHHI	GCGC	1 cut(s)	383
BstMWI	GCNNNNNNNGC	2 cut(s)	83, 476
BstNI	CCWGG	4 cut(s)	312, 427, 485, 528
BstSCI	CCNGG	4 cut(s)	310, 425, 483, 526
BstSFI	CTRYAG	1 cut(s)	22
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	5 cut(s)	157, 206, 229, 436, 460
BtsIMutI	CAGTG	1 cut(s)	578
BveI	ACCTGC	1 cut(s)	249
Cac8I	GCNNGC	3 cut(s)	79, 379, 481
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	1 cut(s)	238
CspCI	CAANNNNNGTGG	2 cut(s)	96, 131
CviAII	CATG	7 cut(s)	112, 215, 230, 235, 296, 416, 450
DdeI	CTNAG	2 cut(s)	254, 362
EaeI	YGGCCR	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	238
Eco88I	CYCGRG	1 cut(s)	87
EcoNI	CCTNNNNNAGG	1 cut(s)	297
EcoRII	CCWGG	4 cut(s)	310, 425, 483, 526
FaeI	CATG	7 cut(s)	115, 218, 233, 238, 299, 419, 453
FaiI	YATR	9 cut(s)	113, 216, 231, 236, 297, 417, 444, 451, 624
FalI	AAGNNNNNCTT	2 cut(s)	378, 410
FatI	CATG	7 cut(s)	111, 214, 229, 234, 295, 415, 449
FokI	GGATG	5 cut(s)	144, 213, 236, 443, 467
FspBI	CTAG	2 cut(s)	128, 206
GlaI	GCGC	1 cut(s)	382
HaeII	RGCGCY	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	115, 218, 233, 238, 299, 419, 453
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HincII	GTYRAC	1 cut(s)	492
HindII	GTYRAC	1 cut(s)	492
HinfI	GANTC	3 cut(s)	131, 140, 614
HphI	GGTGA	2 cut(s)	332, 419
Hpy166II	GTNNAC	1 cut(s)	492
Hpy188I	TCNGA	4 cut(s)	162, 365, 520, 619
Hpy188III	TCNNGA	2 cut(s)	128, 253
Hpy8I	GTNNAC	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	50, 607
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	4 cut(s)	229, 244, 299, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	83, 476
HpyF3I	CTNAG	2 cut(s)	254, 362
Hsp92II	CATG	7 cut(s)	115, 218, 233, 238, 299, 419, 453
HspAI	GCGC	1 cut(s)	381
LweI	GCATC	5 cut(s)	113, 166, 191, 336, 381
MaeI	CTAG	2 cut(s)	128, 206
MaeIII	GTNAC	4 cut(s)	171, 210, 418, 551
MboII	GAAGA	2 cut(s)	274, 274
MfeI	CAATTG	1 cut(s)	356
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	3 cut(s)	266, 356, 411
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	125
MnlI	CCTC	6 cut(s)	183, 191, 303, 359, 454, 539
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MslI	CAYNNNNRTG	2 cut(s)	180, 344
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	4 cut(s)	312, 427, 485, 528
MunI	CAATTG	1 cut(s)	356
MvaI	CCWGG	4 cut(s)	312, 427, 485, 528
MwoI	GCNNNNNNNGC	2 cut(s)	83, 476
NlaIII	CATG	7 cut(s)	115, 218, 233, 238, 299, 419, 453
NmuCI	GTSAC	2 cut(s)	171, 418
NspV	TTCGAA	1 cut(s)	510
PaeR7I	CTCGAG	1 cut(s)	87
PasI	CCCWGGG	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	140, 614
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	4 cut(s)	310, 425, 483, 526
PspGI	CCWGG	4 cut(s)	310, 425, 483, 526
PspPI	GGNCC	1 cut(s)	238
PspXI	VCTCGAGB	1 cut(s)	87
RseI	CAYNNNNRTG	2 cut(s)	180, 344
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	312, 427, 485, 528
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	8 cut(s)	11, 32, 94, 243, 260, 339, 593, 599
SfaNI	GCATC	5 cut(s)	113, 166, 191, 336, 381
SfcI	CTRYAG	1 cut(s)	22
Sfr274I	CTCGAG	1 cut(s)	87
SfuI	TTCGAA	1 cut(s)	510
SinI	GGWCC	1 cut(s)	238
SlaI	CTCGAG	1 cut(s)	87
SmiMI	CAYNNNNRTG	2 cut(s)	180, 344
SmlI	CTYRAG	1 cut(s)	87
SmoI	CTYRAG	1 cut(s)	87
Sse9I	AATT	3 cut(s)	266, 356, 411
SsiI	CCGC	1 cut(s)	549
SspMI	CTAG	2 cut(s)	128, 206
StyD4I	CCNGG	4 cut(s)	310, 425, 483, 526
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	2 cut(s)	88, 510
TasI	AATT	3 cut(s)	266, 356, 411
TfiI	GAWTC	2 cut(s)	140, 614
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	2 cut(s)	171, 418
Tsp45I	GTSAC	2 cut(s)	171, 418
TspDTI	ATGAA	2 cut(s)	404, 489
TspRI	CASTG	1 cut(s)	585
VpaK11BI	GGWCC	1 cut(s)	238
XagI	CCTNNNNNAGG	1 cut(s)	297
XapI	RAATTY	2 cut(s)	266, 411
XbaI	TCTAGA	1 cut(s)	127
XhoI	CTCGAG	1 cut(s)	87
XspI	CTAG	2 cut(s)	128, 206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.