Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Reverse (-)

15162656 .. 15163635

Gene Structure 980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00093790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCTTCGCTCTGGTGGTCAAATTCATGTGACAACCAGGGATGACTACCCATATAACACATGGAATGTGGAGGAACTTGCCGCTCAAGCAGGCCTGGTTTTGAGAGAGAAAGTGTGGTTCGAAAAGTCTGACTACCCTGGCTATCACAATAAGAGAGGCGGCGGTATTGACAGCAACAAGAAATTTCCACTGGGAGAGAGCTACACCTTCAAATTTATGAAATGCTCCATGATGAAACTATGGCAGCTAATGAAGACAGAAGAAGATGGGGTCTGCAAGCTGCCGATGACTGGCGATATCAGCAAACGACCGTCTCATTTGCCCTTACTGGTGAAACCAAAGTCTCTACATAAGGTTGAAGCAACCAGCCCGGATTGCGAGTCTCATGAACATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

132

Amino Acids

15.12

Weight (kDa)

8.4

Isoelectric Point (pI)

47.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BMT5-like	PF10354	1 - 52	8.5e-13	rRNA (uridine-N3-)-methyltransferase BTM5-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	83
AciI	CCGC	3 cut(s)	81, 159, 162
AcsI	RAATTY	3 cut(s)	21, 182, 212
AfiI	CCNNNNNNNGG	1 cut(s)	290
AgsI	TTSAA	2 cut(s)	211, 359
AjnI	CCWGG	3 cut(s)	35, 93, 136
AluBI	AGCT	3 cut(s)	201, 247, 280
AluI	AGCT	3 cut(s)	201, 247, 280
Alw26I	GTCTC	3 cut(s)	318, 348, 387
AoxI	GGCC	1 cut(s)	91
ApeKI	GCWGC	2 cut(s)	244, 280
ApoI	RAATTY	3 cut(s)	21, 182, 212
AsuC2I	CCSGG	1 cut(s)	371
AsuHPI	GGTGA	1 cut(s)	343
AsuII	TTCGAA	1 cut(s)	120
BbsI	GAAGAC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	256, 267
BccI	CCATC	1 cut(s)	260
BciT130I	CCWGG	3 cut(s)	37, 95, 138
BcnI	CCSGG	1 cut(s)	371
BcoDI	GTCTC	3 cut(s)	318, 348, 387
BisI	GCNGC	4 cut(s)	81, 160, 245, 281
BlsI	GCNGC	4 cut(s)	82, 161, 246, 282
Bme1390I	CCNGG	4 cut(s)	37, 95, 138, 371
BmrFI	CCNGG	4 cut(s)	37, 95, 138, 371
BmrI	ACTGGG	1 cut(s)	200
BmuI	ACTGGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	260
Bpu14I	TTCGAA	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	371
BsaJI	CCNNGG	2 cut(s)	36, 136
Bsc4I	CCNNNNNNNGG	1 cut(s)	290
Bse1I	ACTGG	3 cut(s)	195, 295, 333
BseBI	CCWGG	3 cut(s)	37, 95, 138
BseDI	CCNNGG	2 cut(s)	36, 136
BseGI	GGATG	1 cut(s)	46
BseLI	CCNNNNNNNGG	1 cut(s)	290
BseNI	ACTGG	3 cut(s)	195, 295, 333
BseXI	GCAGC	2 cut(s)	256, 267
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	1 cut(s)	93
BsiEI	CGRYCG	1 cut(s)	311
BsiSI	CCGG	1 cut(s)	371
BslI	CCNNNNNNNGG	1 cut(s)	290
BsmAI	GTCTC	3 cut(s)	318, 348, 387
BsmBI	CGTCTC	1 cut(s)	318
BsnI	GGCC	1 cut(s)	93
Bsp119I	TTCGAA	1 cut(s)	120
BspACI	CCGC	3 cut(s)	81, 159, 162
BspANI	GGCC	1 cut(s)	93
BspHI	TCATGA	1 cut(s)	385
BspT104I	TTCGAA	1 cut(s)	120
BsrBI	CCGCTC	1 cut(s)	83
BsrI	ACTGG	3 cut(s)	195, 295, 333
BssECI	CCNNGG	2 cut(s)	36, 136
Bst2UI	CCWGG	3 cut(s)	37, 95, 138
Bst4CI	ACNGT	1 cut(s)	312
BstBI	TTCGAA	1 cut(s)	120
BstC8I	GCNNGC	2 cut(s)	91, 278
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	3 cut(s)	318, 348, 387
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	3 cut(s)	86, 300, 375
BstNI	CCWGG	3 cut(s)	37, 95, 138
BstSCI	CCNGG	4 cut(s)	35, 93, 136, 369
BstV1I	GCAGC	2 cut(s)	256, 267
BstV2I	GAAGAC	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	93
BtsCI	GGATG	1 cut(s)	46
BtsIMutI	CAGTG	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	91, 278
CciI	TCATGA	1 cut(s)	385
CviAII	CATG	4 cut(s)	26, 60, 229, 386
CviJI	RGCY	6 cut(s)	93, 141, 201, 247, 280, 369
CviKI_1	RGCY	6 cut(s)	93, 141, 201, 247, 280, 369
Eco147I	AGGCCT	1 cut(s)	93
Eco32I	GATATC	1 cut(s)	298
EcoRII	CCWGG	3 cut(s)	35, 93, 136
EcoRV	GATATC	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	318
FaeI	CATG	4 cut(s)	29, 63, 232, 389
FatI	CATG	4 cut(s)	25, 59, 228, 385
Fnu4HI	GCNGC	4 cut(s)	81, 160, 245, 281
FokI	GGATG	1 cut(s)	53
Fsp4HI	GCNGC	4 cut(s)	81, 160, 245, 281
GluI	GCNGC	4 cut(s)	81, 160, 245, 281
HaeIII	GGCC	1 cut(s)	93
HapII	CCGG	1 cut(s)	371
Hin1II	CATG	4 cut(s)	29, 63, 232, 389
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	371
HphI	GGTGA	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	130
Hpy188III	TCNNGA	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	217
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	86, 300, 375
Hsp92II	CATG	4 cut(s)	29, 63, 232, 389
LmnI	GCTCC	1 cut(s)	230
Lsp1109I	GCAGC	2 cut(s)	256, 267
MaeIII	GTNAC	1 cut(s)	28
MbiI	CCGCTC	1 cut(s)	83
MboII	GAAGA	3 cut(s)	265, 272, 275
MluCI	AATT	3 cut(s)	21, 182, 212
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	2 cut(s)	64, 149
MspI	CCGG	1 cut(s)	371
MspR9I	CCNGG	4 cut(s)	37, 95, 138, 371
MvaI	CCWGG	3 cut(s)	37, 95, 138
MwoI	GCNNNNNNNGC	3 cut(s)	86, 300, 375
NciI	CCSGG	1 cut(s)	371
NlaIII	CATG	4 cut(s)	29, 63, 232, 389
NmuCI	GTSAC	1 cut(s)	28
NspV	TTCGAA	1 cut(s)	120
PagI	TCATGA	1 cut(s)	385
PceI	AGGCCT	1 cut(s)	93
PkrI	GCNGC	4 cut(s)	82, 161, 246, 282
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	35, 93, 136
PspGI	CCWGG	3 cut(s)	35, 93, 136
SatI	GCNGC	4 cut(s)	81, 160, 245, 281
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	4 cut(s)	37, 95, 138, 371
SetI	ASST	6 cut(s)	203, 209, 249, 282, 357, 398
SfuI	TTCGAA	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	21, 182, 212
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	3 cut(s)	81, 159, 162
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	4 cut(s)	35, 93, 136, 369
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	120
TasI	AATT	3 cut(s)	21, 182, 212
TauI	GCSGC	2 cut(s)	83, 162
TscAI	CASTG	1 cut(s)	195
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	244, 280
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	4 cut(s)	14, 233, 248, 266
TspRI	CASTG	1 cut(s)	195
XapI	RAATTY	3 cut(s)	21, 182, 212
XcmI	CCANNNNNNNNNTGG	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.