Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005058

Physical Location & Seq

Genomic Coordinates Forward (+)

20495590 .. 20497376

Gene Structure 1787 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGGGTAGTGGTAGGGAGAGATGGATTGAACACTACAGTAGCGCACAAGAGATATTGCTGGTTGGTGAAGGGGACTTTTCATTCTCTGCTTGTTTAGCTCGAACATTTGGCTCTGCTTGCAACATGGTGGCAACTTCTCTCGAATCTCAAGGTTCTTTAAGGTCCAAACATTGGAGCTGTTTGTCACACTTGAGTGAGTTGAAGAGGAGAGGGTGCTTGGTGTTGCATGATGTTGATGTGTATGAGATGGACCTCCATCCCGCTCTGCAATGGAGGAAATTTGATGTCATCGTCTTCAACTTTCCTCATGCAGGCCATTTCCCCTGGCTACGTGAAAGAAACCCTCAGCTAATTCAAATGCACAAGAACTTGTTGAAAGCCTTCTTCGAAAATGCCCGTGGGATGCTGAGGGAAGGCGGGGAAGTTCATGTTGCAACCAGAGATGACTACCCGTATAACAGATGGAATGTGGAGGAACTTGCAGAGGAAGCAGGCCTGGTTTTGATGGAGAAAGTGTGGTTTAAAAAATCGGACTACCCGGGTTACCAGAACAAGAGAGGGGGTGACATCAAGAGCAACAAAACGTTTCGTCTCAGAAATTGTTTCACATTCAAATTTGCTCTGCAACAATATGAGTATGACTATACTTGCGATGAAATGTCTGTTTGCAGCGACGACTTTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000154 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008168 GO:0008170 GO:0008173 GO:0008649 GO:0008757 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016072 GO:0016436 GO:0016740 GO:0016741 GO:0022613 GO:0031167 GO:0032259 GO:0034470 GO:0034641 GO:0034660 GO:0042254 GO:0043170 GO:0043412 GO:0043414 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0070042 GO:0070475 GO:0071704 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF2431

Protein Analysis

229

Amino Acids

26.62

Weight (kDa)

6.31

Isoelectric Point (pI)

58.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G55790 AT1G55803
fragaria_vesca	FvH4_6g40260
malus_domestica	MD05G1233800.v1.1 MD09G1133300.v1.1 MD09G1133400.v1.1 MD09G1133600.v1.1 MD17G1120900.v1.1
prunus_persica	Prupe.3G193200_v2.0.a1 Prupe.3G193200_v2.0.a1 Prupe.3G193300_v2.0.a1 Prupe.6G197000_v2.0.a1
pyrus_communis	pycom09g05440 pycom09g05480 pycom17g11130
rosa_chinensis	RchiOBHm_Chr2g0155281 RchiOBHm_Chr2g0155291 RchiOBHm_Chr5g0024491
rosa_laevigata	RLG00000020835
rosa_multiflora	Rmu_sc0000761.1_g000011 Rmu_sc0012066.1_g000010
rosa_roxburghii	Rroxscaffold_2G00093790 Rroxscaffold_2G00093800
rosa_rugosa	Rorug02G0446700
rosa_samantha	Rh2AG513100 Rh2BG523700 Rh2CG498100 Rh2DG533400 Rh5BG172400
rosa_wichuraiana	Rw2G042160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	263
AciI	CCGC	2 cut(s)	261, 417
AclI	AACGTT	1 cut(s)	584
AcsI	RAATTY	2 cut(s)	278, 614
AfiI	CCNNNNNNNGG	2 cut(s)	171, 311
AgsI	TTSAA	6 cut(s)	29, 202, 298, 356, 376, 613
AjnI	CCWGG	2 cut(s)	323, 495
AleI	CACNNNNGTG	1 cut(s)	192
AluBI	AGCT	3 cut(s)	98, 177, 349
AluI	AGCT	3 cut(s)	98, 177, 349
Alw26I	GTCTC	1 cut(s)	596
Ama87I	CYCGRG	1 cut(s)	538
AoxI	GGCC	2 cut(s)	313, 493
ApeKI	GCWGC	1 cut(s)	669
ApoI	RAATTY	2 cut(s)	278, 614
Asp700I	GAANNNNTTC	1 cut(s)	380
AspLEI	GCGC	1 cut(s)	44
AspS9I	GGNCC	2 cut(s)	162, 250
AsuC2I	CCSGG	2 cut(s)	539, 540
AsuHPI	GGTGA	2 cut(s)	77, 575
AsuII	TTCGAA	1 cut(s)	387
AvaI	CYCGRG	1 cut(s)	538
AvaII	GGWCC	2 cut(s)	162, 250
BbsI	GAAGAC	1 cut(s)	286
BbvCI	CCTCAGC	2 cut(s)	345, 407
BbvI	GCAGC	1 cut(s)	681
BccI	CCATC	5 cut(s)	15, 241, 264, 456, 499
BciT130I	CCWGG	2 cut(s)	325, 497
BcnI	CCSGG	2 cut(s)	539, 540
BcoDI	GTCTC	1 cut(s)	596
BfmI	CTRYAG	1 cut(s)	34
BisI	GCNGC	1 cut(s)	670
BlsI	GCNGC	1 cut(s)	671
Bme1390I	CCNGG	4 cut(s)	325, 497, 539, 540
Bme18I	GGWCC	2 cut(s)	162, 250
BmeT110I	CYCGRG	1 cut(s)	538
BmgT120I	GGNCC	2 cut(s)	162, 250
BmrFI	CCNGG	4 cut(s)	325, 497, 539, 540
BmsI	GCATC	1 cut(s)	393
BpiI	GAAGAC	1 cut(s)	286
Bpu10I	CCTNAGC	2 cut(s)	345, 407
Bpu14I	TTCGAA	1 cut(s)	387
BpuEI	CTTGAG	2 cut(s)	132, 211
BpuMI	CCSGG	2 cut(s)	539, 540
BsaAI	YACGTR	1 cut(s)	332
BsaJI	CCNNGG	3 cut(s)	323, 397, 538
BsaXI	ACNNNNNCTCC	2 cut(s)	500, 530
Bsc4I	CCNNNNNNNGG	2 cut(s)	171, 311
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	2 cut(s)	325, 497
BseDI	CCNNGG	3 cut(s)	323, 397, 538
BseGI	GGATG	2 cut(s)	256, 408
BseLI	CCNNNNNNNGG	2 cut(s)	171, 311
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	3 cut(s)	359, 398, 607
BseRI	GAGGAG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	681
BshFI	GGCC	2 cut(s)	315, 495
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	2 cut(s)	171, 311
BsmAI	GTCTC	1 cut(s)	596
BsmBI	CGTCTC	1 cut(s)	596
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	2 cut(s)	315, 495
BsoBI	CYCGRG	1 cut(s)	538
Bsp119I	TTCGAA	1 cut(s)	387
BspACI	CCGC	2 cut(s)	261, 417
BspANI	GGCC	2 cut(s)	315, 495
BspCNI	CTCAG	3 cut(s)	358, 399, 606
BspT104I	TTCGAA	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	263
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	3 cut(s)	323, 397, 538
Bst2UI	CCWGG	2 cut(s)	325, 497
Bst4CI	ACNGT	1 cut(s)	38
Bst6I	CTCTTC	1 cut(s)	197
BstBAI	YACGTR	1 cut(s)	332
BstBI	TTCGAA	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	118, 313, 493
BstDEI	CTNAG	3 cut(s)	345, 407, 593
BstDSI	CCRYGG	1 cut(s)	397
BstEII	GGTNACC	1 cut(s)	542
BstENI	CCTNNNNNAGG	1 cut(s)	309
BstF5I	GGATG	2 cut(s)	256, 408
BstHHI	GCGC	1 cut(s)	44
BstMAI	GTCTC	1 cut(s)	596
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 117, 488
BstNI	CCWGG	2 cut(s)	325, 497
BstPI	GGTNACC	1 cut(s)	542
BstSCI	CCNGG	4 cut(s)	323, 495, 537, 538
BstSFI	CTRYAG	1 cut(s)	34
BstV1I	GCAGC	1 cut(s)	681
BstV2I	GAAGAC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	315, 495
BtgI	CCRYGG	1 cut(s)	397
BtgZI	GCGATG	1 cut(s)	666
BtsCI	GGATG	2 cut(s)	256, 408
Cac8I	GCNNGC	3 cut(s)	118, 313, 493
CfoI	GCGC	1 cut(s)	44
Cfr13I	GGNCC	2 cut(s)	162, 250
Cfr9I	CCCGGG	1 cut(s)	538
CviAII	CATG	4 cut(s)	124, 227, 308, 428
CviJI	RGCY	8 cut(s)	98, 111, 177, 315, 328, 349, 380, 495
CviKI_1	RGCY	8 cut(s)	98, 111, 177, 315, 328, 349, 380, 495
DdeI	CTNAG	3 cut(s)	345, 407, 593
DraI	TTTAAA	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	495
Eco47I	GGWCC	2 cut(s)	162, 250
Eco88I	CYCGRG	1 cut(s)	538
Eco91I	GGTNACC	1 cut(s)	542
EcoNI	CCTNNNNNAGG	1 cut(s)	309
EcoO65I	GGTNACC	1 cut(s)	542
EcoRII	CCWGG	2 cut(s)	323, 495
Esp3I	CGTCTC	1 cut(s)	596
FaeI	CATG	4 cut(s)	127, 230, 311, 431
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	123, 226, 307, 427
FauI	CCCGC	2 cut(s)	268, 410
Fnu4HI	GCNGC	1 cut(s)	670
FokI	GGATG	2 cut(s)	243, 415
Fsp4HI	GCNGC	1 cut(s)	670
GlaI	GCGC	1 cut(s)	43
GluI	GCNGC	1 cut(s)	670
HaeIII	GGCC	2 cut(s)	315, 495
HapII	CCGG	1 cut(s)	539
HhaI	GCGC	1 cut(s)	44
Hin1II	CATG	4 cut(s)	127, 230, 311, 431
Hin6I	GCGC	1 cut(s)	42
HinP1I	GCGC	1 cut(s)	42
HinfI	GANTC	1 cut(s)	143
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	2 cut(s)	77, 575
Hpy188I	TCNGA	2 cut(s)	532, 596
Hpy188III	TCNNGA	2 cut(s)	140, 571
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	3 cut(s)	62, 391, 407
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	2 cut(s)	331, 584
HpyCH4V	TGCA	9 cut(s)	120, 226, 268, 311, 361, 434, 482, 625, 669
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 117, 488
HpyF3I	CTNAG	3 cut(s)	345, 407, 593
HpySE526I	ACGT	2 cut(s)	331, 584
Hsp92II	CATG	4 cut(s)	127, 230, 311, 431
HspAI	GCGC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	174
Lsp1109I	GCAGC	1 cut(s)	681
LweI	GCATC	1 cut(s)	393
MaeII	ACGT	2 cut(s)	331, 584
MaeIII	GTNAC	3 cut(s)	183, 542, 563
MbiI	CCGCTC	1 cut(s)	263
MboII	GAAGA	3 cut(s)	214, 286, 376
MluCI	AATT	4 cut(s)	278, 351, 598, 614
MroXI	GAANNNNTTC	1 cut(s)	380
MseI	TTAA	2 cut(s)	158, 522
MslI	CAYNNNNRTG	1 cut(s)	192
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	4 cut(s)	325, 497, 539, 540
MvaI	CCWGG	2 cut(s)	325, 497
MwoI	GCNNNNNNNGC	3 cut(s)	95, 117, 488
NciI	CCSGG	2 cut(s)	539, 540
NlaIII	CATG	4 cut(s)	127, 230, 311, 431
NmuCI	GTSAC	2 cut(s)	183, 563
NspV	TTCGAA	1 cut(s)	387
OliI	CACNNNNGTG	1 cut(s)	192
PceI	AGGCCT	1 cut(s)	495
PdmI	GAANNNNTTC	1 cut(s)	380
PfeI	GAWTC	1 cut(s)	143
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	1 cut(s)	671
Ppu21I	YACGTR	1 cut(s)	332
Psp1406I	AACGTT	1 cut(s)	584
Psp6I	CCWGG	2 cut(s)	323, 495
PspEI	GGTNACC	1 cut(s)	542
PspGI	CCWGG	2 cut(s)	323, 495
PspPI	GGNCC	2 cut(s)	162, 250
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	2 cut(s)	158, 522
SatI	GCNGC	1 cut(s)	670
Sau96I	GGNCC	2 cut(s)	162, 250
ScrFI	CCNGG	4 cut(s)	325, 497, 539, 540
SetI	ASST	8 cut(s)	100, 154, 164, 179, 255, 334, 351, 587
SfaNI	GCATC	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	34
SfuI	TTCGAA	1 cut(s)	387
SinI	GGWCC	2 cut(s)	162, 250
SmaI	CCCGGG	1 cut(s)	540
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	2 cut(s)	147, 190
SmoI	CTYRAG	2 cut(s)	147, 190
Sse9I	AATT	4 cut(s)	278, 351, 598, 614
SseBI	AGGCCT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	261, 417
StuI	AGGCCT	1 cut(s)	495
StyD4I	CCNGG	4 cut(s)	323, 495, 537, 538
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	2 cut(s)	334, 587
TaqI	TCGA	3 cut(s)	100, 141, 387
TasI	AATT	4 cut(s)	278, 351, 598, 614
TfiI	GAWTC	1 cut(s)	143
Tru1I	TTAA	2 cut(s)	158, 522
Tru9I	TTAA	2 cut(s)	158, 522
TseFI	GTSAC	2 cut(s)	183, 563
TseI	GCWGC	1 cut(s)	669
Tsp45I	GTSAC	2 cut(s)	183, 563
TspDTI	ATGAA	3 cut(s)	69, 416, 669
TspMI	CCCGGG	1 cut(s)	538
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	2 cut(s)	162, 250
XagI	CCTNNNNNAGG	1 cut(s)	309
XapI	RAATTY	2 cut(s)	278, 614
XmaI	CCCGGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.